Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------ARR14(2)          --------->ARR11(3)          <---------ARR11(3)                       --------->YAB1          --------->ARR14(2)         <---------ARR14(2) ------>ANAC58           --------->At4g35610      <---------YAB1 ------>ANAC58           <---------At4g35610 --------->GLK1(2) --------->LBD16 ------>ANAC46       --------->ARR14(2)     --------->YAB1   <---------LBD16                --------- --->TOE1(2)         <---------ARR14(2)    <---------ATHB12  --------->LBD16          --------->YAB1 --ICU4  --------->GLK1(1)           --------->ARR14(2) <---------bZIP60(1)       <------ZmHOX2a(1) -ATHB12 <---------GLK1(1)          <------ZmHOX2a(1)   --------->bZIP60(1)     --------->MYB59   acgaaaactggatatctgaatcaaatctgctaccaagaggattcaataatctatgatgacatccccagaatatagagaatgttaggaatcataagaaagc  3705300                   <-----------GT1             <---------ANAC58       --------->ZAT14                      <----------DOF2       --------->ZAT18         <----------DOF2 <---------ANAC58        <----------DOF2       <---------ZAT14 <----------DOF2      ------>ZmHOX2a(1)        --------->At4g35610       <---------ZAT18<---------DAG2     ---------->ID1         <----------DOF2       --------->At4g35610   <---------At4g35610              ------>ZmHOX2a(1)--------------->AtSPL8 ->DOF2<---------At4g35610   --------->At4g35610 <---------CCA1(2)   <---------At4g35610    ---------   taagaagagtgctcacttgtttagccttttcagctttctcttcgtcctttcgtctcttctcttcctctttctgcttcattttctgttccttcttcaaagc  3705400                                                 <---------ARR14(2)                            <<<<<<<<<ARR2        <---------ARR11(3)       --------->YAB1                     --------->At4g35610         --------->ARR14(2)      <---------YAB1          <---                     --------->LBD16             --------->ARR11(3)      <---------AHL20(2)      <---                 --------->ARR14(2)    --------->SPL7                   --------->AHL20(1)     ------                 <---------ARR14(2)   --------->SPL1(1)   --------->GLK1(1)                <---------                 ------->TEIL--------->YAB1    ----------->ARR10        <---------AHL20(1) ----------              --------->ANAC58       <---------SPL7   --------->ANAC46  --------->AHL20(2) <---------              --------->ANAC46  --------->ARR14(2) <-------TEIL   ----------->GT1     --------->ANAC58   ---------->DOF2  --------->ANAC46<---------ANAC55(2)   <---------GLK1(1)           --------->ANAC58 ->DOF2       --------->ANAC58  <---------ARR14(2)--------->CCA1(2)     <---------AHL20(2) ----------   actacaaaagaattcaacgcatccgctacaatcaaatcccgtacgaaggaagatacacagaaatcggagagtaatataataacatcagacgaaaacgtac  3705500      <---------TOE1(1)                                                                     <-------- <-----------GT1                                                                         <---------ANAC46 ------DAG2        --------->REM1(1)                                                     <---------ANAC58 -------DOF2<-------TEIL                            --------->ALFIN1                     <---------ANAC58 ->TEIL--------->LBD16                   ----------->RAV1(1)                          <----------DOF2 ------AtSPL3  <---------ZAT2          --------->ZAT2                            --------->MYB52(1) ----->AtSPL3  <---------At4g35610     <---------ZAT2<---------MYB46(3)       <---------At4g35610 ------AtSPL8  --------->At4g35610     <---------At4g35610                    --------->At4g35610 ----->AtSPL8  --------->ZAT2          --------->At4g35610    --------->GLK1(2)  <---------DOF5.7(2)   tttttactccgaggtccagctccatcaccagcgctagactcagcagcattcaaggtggtagaagaatccatggctaattcagataacgctttcgtagttt  3705600                --------->YAB1           ------>MYB46(1)        <---------HSFC1(2)        --------->HSFC1(2)        --------->HSFB2a(1)        <---------HSFB2a(1)       ------->TEIL      <---------ALFIN1    --------->RAP2.6(2)    --------->RAP2.3(2)    --------->DEAR3(1)  <---------At4g35610                                 <----------DOF2  --------->At4g35610                    ----------->GT1 -TOE1(2)  ------>MYB83    --------->GLK1(2) ---------->DOF2   <---------GLK1(2)   gatcagccgcaccttccatcgtaatggagattccaaaatcaacaagataaaacgctctttgctcagattgttgtttcaagtttctctatatgaaatgtta  3705700                 <------NtERF2                ------>NtERF2 <---------ANAC46               --------->DEAR3(1)               <---------DEAR3(1)              --------->RAP2.3(1)              --------->ATERF1(1)                              --------->ANAC58              <------NtERF2   <---------ANAC58            <---------PCF2  ===========================             <---------ATERF1(1)                          <---------ARR14(2)             <---------RAP2.3(1)                      <---------LBD16     <---------------AGL15     -             <---------DEAR4(2)          <---------YAB1 --------->LBD16   --------------->AGL15     <            <---------DEAR3(1)<---------ANAC58   <----------DOF2         <-----------------AGL2     -       ---------->DOF2    <---------ANAC58       <---------DAG2--------->ANAC58              --------    --------->YAB1  *TSS  <---------ANAC58 <-----------GT1--------->ARR14(2)        <----------DOF2 -   agtctatgagaaagacggcgacgatgagacttgcttagggtttattatcccctttacgcgggtccaagcccattagccatttagggcttattcggtttac  3705800             <---------MYB52(1)       ------>MYB83       ------>MYB46(1)       --------->MYB52(1)       <---------ARR14(2)       --------->ARR14(2)     <---------MYB59                                                <---------ARR14(2)    --------->DEAR3(2)       --------------->AGL15                  ------->TEIL   ------->TEIL              <---------------AGL15                  --------->ARR14(2) ============================================MADS_MADS             <---------CCA1(2)       <---------AHL20(2) -------->ANAC58             --------->TOE2(3)              <----------DOF2                <---------YAB1 ---------MYB52(2)           --------->YAB1                 <---------DAG2       ----------->GT1 -------->ANAC46            ----------------->AGL3    --------->ANAC58          <---------TOE1(3) ->ZAT14    <---------MYB52(1)      <---------TOE2(3) --------->ANAC46          <---------TOE2(3) -------->ANAC58          <-----------GT1             --------->ANAC58    <----------DOF2 --------->AHL20(2)   tcacgaaccgaaccggtttgttttgagttaaccatattaagtttcggtttattcatacacaactttattgtatcttctttctatggttacatttttattg  3705900                                               ------>ZmHOX2a(2)                          <---------YAB1      --------->At4g35610                     --------->ZAT6          <---------ARR11(3)                --------->YAB1               --------->ARR11(3)                --------->TOE1(3)          --------->ICU4                            <---------ATHB12                --------->TOE2(3)        --------->YAB1             --------->AHL20(1)              <---------ARR11(3)        <---------AHL20(2)          <---------AHL20(1)              --------->ARR11(3)<---------ANAC46                    <---------ARR11(3)--------->YAB1              --------->GLK1(2) <---------ANAC58             <----------ID1    <-----------GT1              <-----------ARR10 <---------ANAC58         ---------->DOF2     <---------GLK1(1)   aaacacttgctctcaaaatcttaacactatgtttccttgtatataatgatctgcaacttcaaagagacaaaatatttggatttaccaatgacaatttcaa  3706000                                                      --------->CCA1(2)                                          <---------ARR14(2)                                          --------->ARR14(2)                                       --------->ANAC55(2)                             --------->ZAT2      <---------ZAT14                             --------->At4g35610 <---------At4g35610                             <---------ZAT2   ------>ZmHOX2a(1)                             <---------At4g35610 --------->ZAT14                       ---------->DOF2 <---------ANAC58               --------->TOE1(3)      <---------TOE2(3)            --------->TOE2(2)              <--               --------->TOE2(3)     <-----------GT1 <---------ARR14(2)                          ----              ----------->RAV1(2)  <----------DOF2   --------->ARR14(2)     <-----------GT1      <--- ------>ZmHOX2a(1)    --------->AtMYB61<---------ANAC58    <---------At4g35610            <---------YAB1   gtccttcttctccaaaacctgaaaccaaagcagctcggtttacgtttcctctgcagatttgagctcttacctccgtttaaaccgctcggtttgtaattgt  3706100                                                                                                =====                                                                                                =====                                                                                                <----                                                                                       <---------ANAC46                                        <---------ANAC58                               <---------LBD16                                    <---------ANAC58                                  <---------LBD16               <---------ANAC58     <---------ANAC46                                 ================            <---------MYB52(1)      <---------ANAC58                            =====================           <-------GAMYB    <---------ARR11(3)                                  <------ZmHOX2a(2)          <-----------RAV1(1)  <---------MYB46(3)                      <-------GAMYB ------>ZmHOX2a(2)    --------->ZAT14         --------->ARR11(3)  <---------MYB52(1)    <---------MYB46(3)   ---------- ---------TGA1 <---------ANAC58<-----------RAV1(1) <---------YAB1     --------->MYB52(2)   --------->ALFIN1 ----->bZIP60(1)          ----------->ARR10    <-------GAMYB --------->TOE2(3) <---------ARR11(3) ------bZIP60(1)        ---------->DOF2 <---------ANAC58  <-----------GT1      --------->ARR11(3)  <-   cgtcactattctctgttgtttggcagaaaagatttgttgcttgcgagactgttatccttgttacctcagagtttgttgtaagatcgatctcgggtgatgc  3706200  Previous    Next  AGI:  At3g11710.1    Description:  lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative. Identical to Lysyl-tRNA synthetase [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G13490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17542.1); similar to Lysyl-tRNA synthetase, class-2; Aminoacyl-transfer RNA synthetase, class II [Medicago truncatula] (GB:ABN05850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17874.1); contains InterPro domain Aminoacyl-tRNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Nucleic acid binding, OB- Range:  from: 3702175    to: 3705720    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g11720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06440.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06440.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO39900.1); contains domain G3DSA:3.30.530.20 (G3DSA:3.30.530.20); contains domain SSF55961 (SSF55961) Range:  from: 3705871    to: 3708615    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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