Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->ANAC58                               <---------ANAC55(2)                       --------->ANAC46                    <---------ZAT18                    --------->ZAT14                    <---------ZAT14                <---------------AtSPL8   --------->ANAC46                <---------ICU4 --------->ANAC46                --------------->AtSPL8   --------->ANAC58                                           -            --------->AHL20(2) --------->ANAC55(2)                  <---------YAB1                  -            <---------AHL20(2) --------->ANAC55(1)   <-----------------AGL1                         -    --------->ANAC46--------->ZAT18      --------->ANAC58          --------->AHL20(2)          <----- -------->GT1  --------->ICU4  --------->ANAC58      --------->At4g35610                <---------GLK1(1)   ttgtaaacacaagtttaattagtacacaaaaacacgcaatcccaagtaatacatgaactgaaatggcattaatatagctcttaagttgagaaatcgggtt  3622200           <---------At4g35610           ----------->RAV1(2)                                                                <------           --------->At4g35610        ---------->DOF2                                         <------ -------->ANAC58           --------->MYB59                 --------->DAG2                     <------ -------->ANAC58           <---------TOE2(3)              ---------->DOF2           <----------DOF2 -------->ANAC46        --------->CCA1(2)         <---------YAB1          <------ZmHOX2a(2) --------- ---P   <---------------AGL15  <-------TEIL   <----------DOF2 --------->ALFIN1<---------At4g35610   gcaagcaattctcatctgagtaagagatttaggttcgacttaaagacgctttaaaattgaaaaagtggaagaagagatcgagcttactttggagtttctt  3622300                        --------->MYB52(1)     ------->TEIL      --------->TOE1(2) ---ANAC46            --------->MYB46(3)                    --------->At4g35610 ---ANAC58            <---------MYB52(2)                    --------->GLK1(1)                 <------ ---ANAC58       --------->ANAC46              --------->ANAC46                              -------- >GLK1(2)      <---------ANAC55(2)     --------->YAB1     <------ZmHOX2a(1)                 <--------   gtccatgtacctgcattacatgaaacaaacgaagaacaaaatcagaaacacgaagaagtaggagctctatgaaaccaaaaacttcaactaaatggataca  3622400                                                            ----------->HVH21                                                          <---------At4g35610                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                   --------->CCA1(2)                                                  --------->AGP1                                                  --------->ARR14(2)                                                  <---------ARR11(3)                                                  <---------ARR14(2)                             ----                      --------->DAG2              --------->ARR11(3)                  --------->ARR14(2)                     ---------->DOF2              <---------AGP1                     --------->ARR14(2)                <----------ID1     <---------ARR11(3)     --------->At4g35610        <---------ARR14(2) -TEIL          ----------->GT1    --------->ARR11(3)<---------HSFB2a(2)     <---------ICU4      <--- ->CCA1(2)   ---------->DOF2<---------ANAC46     <---------GLK1(1)   ------>ZmHOX2a(2)--------->GLK1(2) -ARR14(2) --------->YAB1--------->ALFIN1       ----------->ARR10----------->HVH21   <---------GLK1(2)   gagaaattagaaatcaaaaggaaaaaagtggcgaagagaacttacttcttgagatctggaggctgacctgatcgactcatacttgcagaatcggagaaga  3622500                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                        --------->O2                                                                                        --------->TGA2(1)                                                                                        --------->bZIP60(1)                                                                                        <---------bZIP60(1)                                                                                        <---------bZIP60(2)                                                                                        <---------ANAC58                                                                                        <---------TGA2(1)                                                                                        <---------O2                                                                                        --------->TGA1a                                      <---------ZAT14                                  ----------->STF1                                      --------->ZAT14                                 <---------TGA2(2)                          --------->ZAT2                                         --------->AHL20(2)         --------->At4g35610         <----------DOF2                       ----------->GT1  <--------         <---------At4g35610         <---------DAG2                      ---------->DOF2<---------TGA1a        <---------ARR11(3)--------->At4g35610                            =========================bZIP_DOF ------->GT1              <---------At4g35610                      ---------->DOF2   ----------->TGA1 -------ID1               <---------ZAT2      <---------WOX13(1)   ===============================bZIP_DOF   cgaaaaacgagagcttagggtttttctcagctacgaacactttactcgattgattccagtctccagagcgaaagagaaagaaaaaaaatgacgtcggtct  3622600                       <---------MYB52(1)             --------->ANAC58                      <-----------HVH21            <---------WRKY18(1)                     --------->DEAR3(1) <---------YAB1--------->ANAC58                 --------->MYB46(3)    --------->TOE2(3)     ---------->DOF2            *TSS <---------ABI4(2)  <------------CBF  --------->RAP2.6(2)                         ---         <---------AtMYB61     --------->ANAC58   ----------->HVH21 <-----------HVH21       ---------         --------->ALFIN1<---------DEAR3(2)       --------->WRKY38(1)                   ---------->DOF2 -DEAR3(2)<---------MYB46(3)   --------->ANAC58   --------->WRKY12 <----------DOF2   <xxxxxxxxxxxxxxx   gcaaaactagagtggtcgaagcaccgtcgtttcaagcccattgttaatgggtttgaccgcaaaaaaagcctttcacatgtttcaaaacataaaagtaggg  3622700                                                             <---------ALFIN1                                                         --------->AtMYB61                                                      <xxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxsmallRNA(le3)                                                      <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <xxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                    <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                    <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 --------->ZAT6                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <-----------ARR10 --------->MYB46(3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                       <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxsmallRNA(si3)                                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ICU4                  <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <---------LBD16       <xxxxxxxxxxxxxxxxsmallRNA(s)--------->LBD16                <xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <---------LBD16        <xxxxxxxxxxxxxxxxsmallRNA(se3) *TSS --------------->AGL15               <xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ALFIN1     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->YAB1 ------>MYB83<-----------GT1          <----    <---------HSFB2a(2)         --------->ANAC46<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <------    --------->HSFB2a(2)     <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------RVE1(1)    --------->LBD16       --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------CCA1(1)   <---------ANAC46<---------PCF5  <xxxxxxxxxxxxxxxxsmallRNA(i) <---------LBD16    <---------ARR11(3) ------>ALFIN1 <xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ARR11(3) >ALFIN1--------->GLK1(2) --------->ANAC58--------->GLK1(2)------>MYB46(1)<---------------AGL15 ----- xxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------MYB59 ----------------->AGL3 -----   gtgttccgagaatcgaactcgggacctctcgcacccgaagcgagaatcataccactagaccaaacacccggtgttactaattagagatatttagtcattt  3622800                        --------->ARR11(3)                      <---------AHL20(2)         <---------AHL20(2)                                                                       ---        --------->AHL20(2)                                                                        ---        <---------AHL20(1)                                                                       ----        <---------AHL20(2)                                                                       <--- <-----------GT1 ------------>CBF         --------->MYB46(3)                --------->ANAC58     ---- -----AHL20(2)  <-----------GT1         <-----------GT1                     --------->ANAC58     <--- -----TBP--------->AHL20(2)        <---------YAB1                           ------------------------>ANAC81 ---->AHL20(2)  --------->YAB1   ----------->GT1                     ----------->GT1         -------- ---->YAB1   --------->YAB1    <------------CBF        --------->At4g35610---------->DOF2---------->DOF2   atattactaaattatttataacaatttatcttgaattgtgattacccatccaaaattatctgaattacatgtagtcaaaagccataaaactaaaagaaag  3622900              --------->AHL20(2)              <---------AHL20(1)              --------->AHL20(1)              <---------AHL20(2)    --------->ANAC46   ------>MYB46(1)   ------>MYB83  <---------ALFIN1 --------->MYB46(3) ------>CCA1(2)                   ------>ZmHOX2a(1)      <---------bZIP60(2) ------>GLK1(1)        ------>MYB46(1)            <---------ANAC58 ----->ARR11(3)        ------>MYB83               <---------ANAC46 ------ARR11(3)      <---------MYB59              <---------ANAC58 ----->ARR14(2)      <---------MYB46(2)  <------ZmHOX2a(1)        ------>ZmHOX2a(1) ------ARR14(2)   <-----------GT1<---------------AGL15   --------->CCA1(2)             ---------->DOF2 -->DOF2   --------->WOX13(1)   <-----------------AG  ----------->HVH21      ---------->DOF2      <--   atacccactgcatcaattaattaccaaacctttctccttactaggaaatattgcctgtgatatggctcctcatagagactaaagaacataaaagagcatt  3623000                                                           <---------YAB1                                                         --------->CCA1(2)                                   ------->GAMYB        <---------ARR14(2)                                  --------->MYB46(3)    --------->ARR14(2)                                 --------->ANAC58      <------ZmHOX2a(1)                            -                                 --------->ANAC58    <---------TOE2(3)                          <----                                ------->GAMYB --------->ANAC58                                  <----                               --------->MYB46(3)--------->CCA1(2)                              <----       <-------TEIL       --------->HSFB2a(2) --------->ANAC58                                  <---- --------DOF2           <---------------------WRI1 --------->ICU4         --------->ATHB12   --------   ctttaaacatccatgttgtttatgtcttcgataacaaccaagagcatcaagaaatgaggatatgatgagttttaagtcattgcaagaggctataagtggg  3623100  Previous    Next  AGI:  At3g11500.1    Description:  small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative. Identical to Probable small nuclear ribonucleoprotein G [Arabidopsis Thaliana] (GB:O82221); similar to SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) [Arabidopsis thaliana] (TAIR:AT2G23930.1); similar to unknown [Populus trichocarpa] (GB:ABK93558.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 3621415    to: 3622612    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g11505.1    Description:  pre-tRNA. tRNA-Pro (anticodon: CGG) Range:  from: 3622698    to: 3622769    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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