Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <------MYB46(1)                                                               <------MYB83                                                              <---------AtMYB61                                                              --------->MYB59                                                          <------MYB83                                                          <---------MYB46(3)                                                          <------MYB46(1)                          <---------TOE2(3)            <-------GAMYB                    --------------->AGL15             --------->MYB111(2)                    <---------------AGL15             --------->MYB55(2)     <---------YAB1<---------ANAC58                   --------->MYB52(2) ---->DOF2         <---------ANAC58                   <-----------RAV1(1) >TOE2(3)          <-----------------AGL2             <---------MYB46(3) >TOE1(3)       <----------DOF2                 <---------MYB52(1)                    --------->GLK1(2)   aactcttctcattctcgtctttcttgttatggatttttgtttatcgaccagtttgtttgttggtttggtttctgtatgaatagatgagaatttgttcaat  3580500                                                --------->TOE1(2)                                               --------->ANAC55(2)                                               --------->ANAC58                                               --------->ANAC55(1)                               <---                                               <---------ANAC55(2)        <---------WOX13(1)     ----                                               --------->ANAC46         --------->ATHB12--------->AHL20(2)                                               --------->ANAC58        <---------YAB1   --------->ATHB12             --------->DAG2                   <-------TEIL        <---------DAG2        --------->ATHB51         <---------ANAC55(2)              ----------->HVH21       <----------DOF2       <---------AHL20(2)  <----------DOF2    <----------DOF2<---------GLK1(1)          <---------ALFIN1        <---------AHL20(2)   ttctctttaatacataaggcatgctttttaaaaaatggatttgtgtgatacgtaagagttttccaacacttttttcattgatgtctaaaattatttgtga  3580600                                                                         --------->YAB1                                                                       --------->AHL20(2)                                                              ------------>CBF                                                            --------->GLK1(1)                                                  <---------ANAC58 --------->YAB1<---------YAB1                                       <----------DOF2     --------->ARR11(3)   <----------DOF2                           --------->ARR11(3)     <---------ANAC58<---------ATHB12     <---------TOE2(3)                           --------->AHL20(1)    ---------->ID1 --------->WOX13(1)  <---------YAB1      <-----------GT1      <---------AHL20(1)<---------DAG2<---------ARR11(3)  <---------ICU4 ------YAB1               --------->YAB1  <-----------GT1<---------TOE2(3)  --------->YAB1 ----->ICU4   --------->LBD16<------------CBF<----------DOF2--------->CCA1(2)--------->GLK1(2)    <--   tgtttgtttaacattccccgtttcacaaaaatattgtttgacttttactttttcgttctaagatatcaatcaaaataataatctttattaatgaagaata  3580700                                  <------------CBF                                <---------YAB1                                <---------AHL20(2)                                --------->AHL20(2)                             <----------DOF2                             <---------------AGL15                             --------------->AGL15                         --------->KAN4(2)                     <---------ANAC55(2)                        <----------TaMYB80                     ----------->GT1                       --------->ARR14(2)    <-----------GT1--------->ICU4                       <---------ARR14(2) --------->YAB1  --------->YAB1                    --------->ANAC55(2)   <---------ICU4  <--------HAHB4                    <---------ANAC55(2)  <---------YAB1  <---------YAB1                    <---------ANAC46--------->YAB1      <---------ARR11(1)               <---------------AtSPL8    --------->ICU4<---------CCA1(2)      <-----------GT1  ------->TEIL ----------->GT1  <---------ANAC58                     <---------AHL20(2) ---------GT1  <---------------AtSPL3 <---------YAB1 <---------ANAC58--------->YAB1 <----------DOF2   taactaattaacaaatgttagtacgtatattcttttaattgtaattataacattttcgtatcattatgtaaaaataagaaaatttcctttgttaaattta  3580800                           <-----------GT1                                                    -------                      <---------YAB1            <---------ANAC55(2)                     <------------CBF             <-----------GT1      <-----------TBP <---------AHL20(2)                   --------->ATHB12     ----------->GT1<---------AHL20(2)          --------->ANAC55(2)                   <---------YAB1    --------->DAG2  --------->AHL20(2)     --------->At4g35610                    <---------GLK1(2)   ---------->DOF2 --------->AHL20(2)      <---------At4g35610       ----------->GT1  <---------AHL20(2)   gtcgaaaaagtaaaatttccatttatttttaactgcatatatatcagcttaagtaatttcttcttagtagaaggtcaaattttagaatttcattgaaaca  3580900                                ----------->HVH21                                    <------NtERF2                               --------->LBD16                                      ------>NtERF2                              <---------ANAC55(2)                                   <---------DEAR3(2)                              --------->ANAC55(2)                                  <---------DEAR3(1)                              <---------ANAC58                                    --------->ATERF1(1)                              <---------ANAC58                                    <------NtERF2     ----------->GT1          <---------ANAC55(1)                               <---------ANAC58    --------->DAG2            <---------ANAC46                   ----------->GT1<---------ANAC58  ---------->DOF2       --------->ARR11(3)               --------->YAB1         <---------ANAC46 ----->CBF              <---------ARR11(3)            --------->YAB1            --------->ETT(2)   atggaaaaggtttcaaaactcagtattatcttccgtgacgaactacaaaacttcaacaatgactatgtcgaaaatatagatgtcgtcggcaaaaaaacat  3581000                                            <------MYB83                  ---------->DOF2           <------MYB46(1)                                      ----         --------->TOE1(1)              --------->ATHB12                                      -------        --------->At4g35610         --------->ZAT2  <-----------TGA1                          -------      <---------ICU4                <---------ZAT2  <-----------HVH21                         -------      --------->ATHB12    --------->AtMYB61--------->MYB59                                    -------     <---------YAB1   <----------ID1<---------At4g35610  --------->DEAR3(1)            --------->ANAC46   --------->YAB1--------->YAB1    ------>NtERF2   --------->ANAC46            --------->ZAT14<------   ctaattcatcatcggacaatgaaagcgaccaattcgccagcttgtttggttcttcgtcaccgtcttcgtttcaaatgcctcttcagtacccgaattacgc  3581100                                                                                     ------>ZmHOX2a(1)                                                                                     --------->AtLEC2         --------->ANAC58                                                     <---------ANAC58         --------->ANAC58                                                     <---------ANAC58         --------->ANAC46                                                 --------->DOF5.7(2)        --------->SPL7                                                    --------->At5g28300    --------->ZAT6       <------ZmHOX2a(1)                            --------->MYB52(1)    <---------------AtSPL3                                           --------->CCA1(2)    --------------->AtSPL3   <---------ARR11(3)                      <---------GLK1(1) ------>DOF2          <------NtERF2                                  --------->GLK1(1) -->ANAC58          --------->ETT(1)                                <---------ARR11(3) -->ANAC58          <---------ANAC46                                <---------ARR14(2) -->ANAC46        <-----------HVH21                                 --------->ARR11(3) -->ANAC55(2)    <-----------RAV1(1)        --------->HSFB2a(2)     --------->ARR14(2)          ----- ---ANAC55(2) --------->ICU4 --------->ARR11(3)                  <-----------------AGL1    ----------   aaaggaacagtacgacattatgtcggaggaagaactcgatcgacttctcaaactctatggtctgcctacagatatcggtaacttgtcctgcaaaaaagaa  3581200         --------->ZAT18         <-------TEIL         <---------ZAT18       <---------PCF2      <---------ANAC58      <---------ANAC58                                                                            <--      <------MYB83                                                                                ---     --------->MYB55(2)                                           --------->TOE2(3)               ---     <---------MYB46(3)      <-------GAMYB                        --------->TOE1(3) --------->ATHB12-    --------->ALFIN1        ----------->GT1           --------->ATHB12             <---------YAB1<--- ---->GLK1(2)            <---------ANAC46            <---------YAB1               <---------TOE2(3)<- >DOF2<------MYB46(1) ----------->HVH21   <---------LBD16     --------->ZAT14    --------->YAB1  ----   tttgcagtgggtgcattcttgtgggagacggggttaaattcttctctggatgagcatgattcagtaaaccctaattcgtccattgatgatttggaagaga  3581300                                  --------->CCA1(2)                                 --------->ARR11(3)                                 --------->ARR14(2)           <--------P       ---------->DOF2         <---------ZAT6 <---------HSFB2a(2)             <---------MYB46(3) <----------DOF2        <---------------AGL15         --------->LBD16                               - -------ARR11(3)        --------------->AGL15         <---------LBD16                         <------ ------>AGP1 --------->MYB52(2)  <---------ARR14(2)  <---------ANAC55(1)                     -------- ------>ARR11(3)        --------->HSFB2a(2)   <---------AHL20(2)                           <---------ANAC58 ----->ZmHOX2a(2)       >>>>>>>ZML2           --------->AHL20(2)             ---------->DOF2<-------- ------GLK1(1) ----------->HVH21<------ZmHOX2a(1)    <---------ANAC58  <------ZmHOX2a(1)   <---------ANAC58 -----ZmHOX2a(2)     --------->AGP1  ----------->GT1 <---------ANAC58<---------TOE2(3)     <---------AtLEC2 ----->GLK1(1) <---------ZAT6 <---------TOE2(3)      <---------ANAC46<---------TOE1(3)   <---------YAB1   gatctttgatagggttagtgacagttctagtaaaggatatggttcaatttatattccgtgggtagcaagttaaggaagtgaaagcctaattttgcttgac  3581400  Previous    Next  AGI:  At3g11400.1    Description:  EIF3G1 (eukaryotic translation initiation factor 3G1); RNA binding / translation initiation factor. similar to EIF3G2 (eukaryotic translation initiation factor 3G2), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G06000.1); similar to unknown [Populus trichocarpa] (GB:ABK92444.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334) Range:  from: 3578394    to: 3580575    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g11405.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55570.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAA94540.1) Range:  from: 3580901    to: 3581365    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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