Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <----------DOF2              --------->ANAC58                                              <----------DOF2                --------->ANAC58                                           <---------RAP2.3(1) --------->WRKY45                                          <---------RAP2.6(2)  --------->WRKY12                                          <---------DEAR3(1)   --------->WRKY38(1)          <---------AHL20(2)              <---------RAP2.3(2)--------->At4g35610       ----------->GT1                   <---------LBD16     <-------GAMYB   --------->ANAC46   --------->ANAC58                      <-------TEIL  >>>>>>>ZML2    <<<<<<<ZML2   --------->ANAC58                    <---------ARR14(2)    <---------At4g35610 ----HSFB2a(2)       --------->ZAT18  <---------At4g35610   --------->MYB46(2) --->HSFB2a(2)--------->YAB1          --------->At4g35610   --------->MYB52(2)            <---------ZAT6   gtagtaagctagtaaattataaggccactggtctggttacagatgcggctctttgttctagttagttgactagaactacaaggcagaatatagtgttgtt  3578000                                                                         <----------DOF2                                                                         <---------DAG2                                                                        <---------ANAC58              --------->ZAT14                                     --------->ATHB12         <----------DOF2                                    --------->GLK1(2)       <-------TEIL             --------->DAG2              <---------ARR11(3)   <---------ANAC46   <---------TOE2(3)           ---------->DOF2              --------->ARR11(3) --------------->AGL15   <---------TOE1(3)<----------DOF2                   <-----------GT1   <---------ANAC58            <   ttcttaaggttctttgtatactctttcagtctataaagtgtgtaagtgattcagttttacaaaatctttcattggctttttctacgtatagtttttggat  3578100                                                                   --------->ALFIN1                                                                  <-------MYC3                   <---------DAG2                                 ------->MYC3                      -            <---------ZAT14                            --------->ANAC58                        <-----            --------->ZAT14                            --------->ANAC58                        ------        --------->ZAT6                                 <----------ID1       <---------ANAC58   <----- ---------TOE2(3)  <----------DOF2                     --------->ANAC46     <---------ANAC58<--------   ttgagatagaacagtacagtgctttatcaattgtgttttaaaattttggtagacaaaacgccaaaacatgtgggcttcgcttgtggaatcagtagttctt  3578200                                                                          --------->HSFB2a(2)                                                                          <---------HSFB2a(2)                                                                          ------>ZmHOX2a(1)        --------->GLK1(2)                                          --------->AHL20(2) --------->DOF2           ----------->GT1                          <---------AHL20(2) -----DOF2                <---------ZAT6           --------->TOE1(2)      --------->HSFC1(1) --------->AGL15----------->GT1       --------->DAG2              <---------AHL20(2)                < ----------AGL15------>ZmHOX2a(1)    ---------->DOF2              --------->AHL20(2)                - -ARR11(3) --------->WOX13(1)     <----------ID1   --------->TOE2(2)      <---------HSFC1(1)       <-   ttaaaagaagaatcaatcctgtaaataagtgttataacgaaaagcccaaaaaacataagagagtctaaattaattcctagaagagggtaagaggcttagt  3578300   ------>NtERF2 --------->ATERF1(1) <---------ANAC58         --------->ARR11(3)                    <------------CBF <---------ANAC58<----------DOF2                              <---------YAB1          --------->GLK1(2) ---------At4g35610       <---------ARR11(3)                 --------->AHL20(2)--------->ANAC58 -------->At4g35610<-----------TBP                        --------->TOE2(3)    ----------->GT1*TSS --------ANAC46  <---------DAG2            <------------CBF  <---------AHL20(2)--------->ANAC58   ---   ggagcgggcctggacacagctttttgtagatattagaattttaaaaattgaatttcttcacattaaaattgctactggaccaagtaaaattctgaaggaa  3578400                       --------->ZAT14                       --------->At4g35610                       <---------ZAT18                  <---------LBD16                ----------->HVH21                --------->ARR14(2)                <---------ARR14(2)               <-----------HVH21              --------->LBD16             <---------ANAC46         <----------DOF2                            --------->DAG2        <---------ANAC58                           ---------->DOF2        <---------ANAC58 --------->ZAT18       --------->TOE1(3)       --------->ABI4(2) <---------ZAT18       --------->TOE2(3)                                 <---       <---------ZAT18 <---------At4g35610  <---------GLK1(1)                           <---------TOE2(3)       <-------TEIL--------->ANAC55(2)      --------->GLK1(1)          ---------->ID1   --------->MYB59 --------->MYB52(1)<---------ANAC55(2)    <------ZmHOX2a(1)      <<<<<<<<<TBF1          <---------TOE1(3) ------>YAB1<---------LBD16            --------->CCA1(2)      <<<<<<<<<TBF1  <<<<<<<<<TBF1    <------   tcaaaacggtgcgttccggttacggagcacacacagataagataggaaaccctaaaagtgcttcttcttcttcgtcttcttcttcagttttaggttacga  3578500                ----------->RAV1(2)                <---------At4g35610                --------->At4g35610               ------->TEIL               --------->GLK1(2)               --------->ARR14(2)             --------->ABI4(2)             ------>NtERF2           <------NtERF2           --------->RAP2.3(1)          <---------RAP2.3(1)          <---------ORA47(2)          <---------DEAR4(2)          <---------ATERF1(1)         <---------RRTF1(3)         <---------RAP2.3(2)                                                    <---------ANAC46      --------->DAG2                            --------->ARR14(2)             --------->ALFIN1     ---------->DOF2                            <---------GLK1(2)--------->ANAC58 --------->ANAC58                            <------ZmHOX2a(2)   --------->ANAC58   <---------ARR14(2) --------->ANAC58                         <---------YAB1   <---------MYB52(2)--------->ALFIN1 ---ZmHOX2a(2) <---------ARR14(2)----------->HVH21     <---------At4g35610 --------->At4g35610 ---YAB1 <---------DEAR3(1)      ----------->TGA1      --------->At4g35610 <---------At4g35610      -   tcgaagcaaaagcggcgcatctgaatcccaaacgagtgacgatgacgatcgattcgcagcaaaaaacgagcaaattcagatggggggaaatggacgaaga  3578600            <---------ANAC58            <---------ANAC58         <---------GLK1(1)         --------->GLK1(1)               --------->HSFB2a(2)    ------>ZmHOX2a(2)                    <-----------RAV1(2)   <------ZmHOX2a(2)                 <------MYB46(1)   --------->CCA1(2)                 <------MYB83  <---------AGP1                   <---------WOX13(1)  --------->GLK1(2)              --------->ATHB12  <---------ARR14(2)             <---------MYB46(3)  <---------ARR14(3)          <---------At4g35610  --------->ARR14(3)          --------->At4g35610  --------->AGP1            <-----------RAV1(2)                                                    --  --------->ARR11(3)       <---------ZAT2<---------HSFB2a(2)                                      <--  --------->ARR14(2)      --------->ANAC46                                                        <--  <---------ARR11(3)      --------->ANAC58 <---------At4g35610        <---------------AtSPL8      --- ---------->ARR10         --------->ANAC58 --------->At4g35610      <------ZmHOX2a(2)     -----------   cgaagatctggatttcttgctccctcccaagcaggtgattggtccagatgagaatggtttgaagacgacgatcgagtacaaattcaacgatgaagaaaat  3578700                                <---------STY1(2)                                --------->STY1(2)                                <---------ZAT2                                --------->ZAT2                               --------->ANAC58                               --------->ANAC58                            --------->LBD16                            <------NtERF2                           --------->ANAC58                           --------->ANAC46                          --------->ZAT18                      <-------MYC4                      ------->MYC3                      -------->ABF1                      <-------MYC2                      <-------MYC3                      ------->MYC4                      ------->MYC2                     =========================================MYC_MYB                     <---------ANAC55(2)                     --------->ANAC55(2)          <----------ID1<---------ARR14(2)        <---------DOF5.7(2)--------->ANAC58        --------->MYB52(1)<---------LBD16                  --------->ANAC46    <---------TOE1(3)--------->TGA1a                       --------->ANAC58    <---------TOE2(3)--------->O2                          --------->ANAC58                        --    <---------YAB1   <--------ABF1                     --------->MYB52(1)  --------->ARR14(2)     --- --------->GT1       <---------O2                    <---------MYB52(2)    <---------ARR14(2)  ------ -------TOE2(3)      <---------TGA1a                 --------->MYB46(3)   <------ZmHOX2a(1)    ------ -------TOE1(3)     ------------>OsbHLH66            <---------MYB55(2)<------ZmHOX2a(1)       ------ ------>DAG2     <------ZmHOX2a(1)   <---------GLK1(2)------->GAMYB  --------->ALFIN1       --------- >GT1 --------->ARR11(3)--------->ARR14(2)      --------->ANAC46--------->AtLEC2            <--------   aaggttaagataacgactaggacacgtgtccgcaagctagcttctgctcgactcaacaaacgagccatggagaggaggaactggcctaagttcggagacg  3578800                                                           --------->MYB46(3)                                                          --------->SPL7                                                      --------->HSFC1(1)                                                      <---------HSFC1(1)                                                      --------->HSFB2a(2)                                                      <---------HSFB2a(2)                                                   ------>ZmHOX2a(1)                                                 --------->HSFC1(2)                                                 ------>ZmHOX2a(2)        <------ZmHOX2a(1)                        ===============================HOX2a_HOX2a      <---------TOE2(3)                          <---------HSFC1(2)       ----------->GT1           -     --------->YAB1   --------->At4g35610       <------ZmHOX2a(2)        --------->LBD16            <    <---------ATHB12  <---------At4g35610       ================================HOX2a_HOX2a       --- ---->NtERF2    <--------P                     --------->ARR14(2)        ------>ZmHOX2a(1)       ---- ------>RAP2.3(3)     --------->bZIP60(2)      <---------ARR11(3)      ----------->RAV1(2)       <--- --->ANAC58    <---------MYB52(1)              <---------ARR14(2)   <---------At4g35610        ------ --->ANAC46--------->At4g35610                <---------GLK1(1)     --------->ZAT2            ------- --->ANAC58<---------At4g35610                --------->GLK1(1)     <---------ZAT2            <------ >ARR14(2) --------->ZAT2                    ----------->ARR10      --------->GLK1(1)       <-------- -ARR14(2) <---------ZAT2     <---------TOE2(3)--------->ARR11(3)--------->LBD16            ---------   cagccaatgaggaagctggtagccatctcactatggtttctaccgaagagatccttctcgaacgaccccgagctcctggtaaattctctccctctgatga  3578900  Previous    Next  AGI:  At3g11397.1    Description:  prenylated rab acceptor (PRA1) family protein. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT5G05987.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72272.1); contains InterPro domain Prenylated rab acceptor PRA1 (InterPro:IPR004895) Range:  from: 3576023    to: 3578088    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g11400.1    Description:  EIF3G1 (eukaryotic translation initiation factor 3G1); RNA binding / translation initiation factor. similar to EIF3G2 (eukaryotic translation initiation factor 3G2), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G06000.1); similar to unknown [Populus trichocarpa] (GB:ABK92444.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334) Range:  from: 3578394    to: 3580575    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version