Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <------MYB46(1)                                                                           <------MYB83                                                                         <--------P                                                                        <---------ANAC58                                                                        <---------ANAC46                                                                        <-------GAMYB                                                                        <---------ANAC58                                                                       <---------MYB46(3)                                                                       --------->MYB52(2)                                                                       --------->ATHB12                                                   <---------ANAC55(1) <---------DEAR3(2)                                                   <---------ANAC58    <------MYB83     <---------ZAT14                            <---------ARR14(2)     <------MYB46(1)     --------->ZAT18                            --------->ARR14(2)     --------->MYB55(2)     <---------ZAT18                    --------->WRKY38(1)           <---------AtMYB61     --------->ZAT14              <---------WRKY45 <---------ANAC58   --------->MYB111(1) --->MYB52(1)                     <---------WRKY12 <---------ANAC46   <---------MYB46(3)        <---- ----->RAV1(1)      --------->ZAT18 <---------TOE2(3)                <--------P                ------ >ANAC46            <---------ZAT14<---------DOF5.7(2)              <-------GAMYB              <----- >ANAC58        <---------MYB52(1)<---------WRKY38(1)              --------->ATHB12    <---------DAG2 >ANAC58  ----------->HVH21      --------->WRKY18(1)               <---------MYB46(3)  <----------DOF2   cagtaagagcactcgaccgttttgcactgaatgtggtcaacgttgtccaagttccgtctactacaaacttggttggttgggaactagtactttttgttcg  3575600           --------->TOE1(3)                                                             <---------TOE2(3)        --------->MYB52(1)                                                              --------->YAB1      <----------DOF2                                                                   <---------ICU4     <---------ANAC58                                                                --------->YAB1     <---------ANAC58                                                               <---------AHL20(2) ---GAMYB  --------->TOE2(3)                                     --------->ATHB12  --------->AHL20(2) --->MYB52(2)                                            <---------AHL20(2)        <---------AHL20(2) ----MYB46(3)  ---------->DOF2            --------->ICU4<---------AHL20(2) <---------AHL20(2)   ttgaattgcttaacgtcaaaagaaaaattgatggtgttgtcaacatgatgagtttttttttaatgtgttattggaattttttttttttaataatgttttt  3575700                        <------ZmHOX2a(2)                       <---------ARR14(2)                       --------->ARR11(3)                       --------->ARR14(2)                                                      ------                       --------->AGP1                                                       ---------                --------->AHL20(2)                    --------->AHL20(2)               <---------ANAC46               <---------YAB1                         <---------AHL20(2)            --------->ICU4               --------->ICU4                --------->ATHB12                      <---------TOE2(3)            --------->ICU4                  --------->ICU4      <------------CBF  --------->YAB1          ----------->GT1  --------->LBD16  <---------YAB1     --------->ATHB12  <---------AHL20(2)   cagagatttgtgtagttattatttagatccagagagtttttcagagattattggattttaatgtgttattggattttttgtttttaatgatgtgcaacaa  3575800                                                                                                 <---                                                                       --------->ANAC58          ----                                                                       --------->ANAC46         <----                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                <-------GAMYB                   <----                                                               <------MYB83                  --------                                                         --------->ZAT14      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         <---------ZAT18     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         <---------ZAT14     xxxxxxxxxxxxxxxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <--------                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxx                                                  xxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxx                               ------------>CBF   xxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxx                     <---------YAB1               *TSS  <---------ZAT6 --------->ANAC58xxxxxxxxxxxxxx                     --------->AHL20(2)           xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxxxxxxxxxxx         <---------ANAC58  <---------YAB1         xxxxxxxxxxxxxxx>smallRNA(si3)     --------->ANAC46         <---------ANAC46  <---------TOE2(3)      xxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(s)         <---------ANAC58 <-----------GT1   <---------TOE2(3)  <------MYB46(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---->DOF2           <---------AHL20(2)    <---------DOF5.7(2) <---------DEAR3(2) <---------ALFIN1 xx -->RAV1(1)      <-----------TBP         --------->DOF5.7(2)xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)x   agagagttttttcttggacatatataattaacattcaatggacattaacgtctgggtagtgtagtcggttatcacgctagtctcacacactagaggtccc  3575900        <---------LBD16       xxxxxxxxxxxxxxxx>smallRNA(s)                    <-----------bZIP910(2)       <---------LBD16                               <-----------TGA1      xxxxxxxxxxxxxxxx>smallRNA(i)                  --------->ANAC58      xxxxxxxxxxxxxxxx>smallRNA(s)                  --------->ANAC46     xxxxxxxxxxxxxxxx>smallRNA(i)                   <---------TGA1a     xxxxxxxxxxxxxxxx>smallRNA(s)                   --------->TGA1a    xxxxxxxxxxxxxxxx>smallRNA(s)                    =================================================   xxxxxxxxxxxxxxxx>smallRNA(i)                     --------->ANAC55(2)   xxxxxxxxxxxxxxxx>smallRNA(s)                     <---------ANAC55(2)  xxxxxxxxxxxxxxxx>smallRNA(s)                      --------->O2  xxxxxxxxxxxxxxxx>smallRNA(i)                      <---------bZIP60(1) ------TOE1(2)                                      <---------O2     --------->ANAC46 ----->LBD16                                        --------->ANAC58 --------->ANAC58 --NtERF2 ------>NtERF2                             --------->bZIP60(2)       <------MYB46(1) -----LBD16                                         --------->bZIP60(1)  --------->ANAC58 ->PCF5xxxxxxxxxxxxxxxx>smallRNA(i)                <-----------bZIP910(1)--------->ANAC58 >smallRNA(fl3)                             <---------ARR14(2)       --------->ANAC58 ---HVH21--------->LBD16                    --------->ARR14(2)    <---------ZAT14 xxxx>smallRNA(si3)                      --------->ANAC55(2)      --------->ZAT14                   < xxxxx>smallRNA(si3)                     <---------ANAC58      --------->LBD16xxxxxxxxxxxxxxxxxxxxxxx xxx>smallRNA(le3)                     <-----------GT1--------->TGA2(2) --------->SPL7              < xx>smallRNA(fl3)        <-----------GT1 <---------ANAC58      --------->At4g35610         <--------- xxxxxxsmallRNA(fl3)  <---------AHL20(2)<---------TOE2(3)     --------->ANAC46<------MYB83 <---------DAG2 xxxxxxxxxxxxxx>smallRNA(i)         <---------ICU4 <-----------STF1<---------ALFIN1     <-----------GT1 xxxxxxxxxxxxxxx>smallRNA(s)   ------>ZmHOX2a(1)  <---------ALFIN1<---------REM1(2)<---------YAB1<---   cggttcgaacccgggctcagacatttttttctccttcatatttacgtttctgccacgtcatcatccgctacacggacgctaggttctgattcactttttc  3576000                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                        --------->GLK1(1)                                                        <---------GLK1(1)              --------->ANAC58                     --------->GLK1(2)    --------->ZAT14 =bZIP_DOF    --------->ANAC58                    <---------GLK1(2)     <---------ZAT14 ---------ANAC58                                  --------->ARR14(2)<-----------GT1 xx>smallRNA(se3)      *TSS --------->TOE1(2)     <---------ARR14(2)<---------ICU4 ---------ANAC58      --------->ANAC46      <---------LBD16  --------->LBD16               ---------- -DOF2       --------->DAG2 --------->TOE2(2) --------->At4g35610<---------GLK1(2)     <---------ARR14(2) -------DOF2---------->DOF2----------->RAV1(2)--------->LBD16<---------LBD16           --------->ARR14(2)   tttcgtcttgggaaaaaagcaaacacaaaacctgagaacaaaaacatccgcagaatcgatatccccagaatcactactctacaaattcgaatccaaagtt  3576100                                                                                                    <                                          <---------MYB52(1)                                    <----                             <---------YAB1                                                     <----                            <---------GLK1(2)<---------ANAC58                                   -----                        <---------At4g35610  <---------ANAC58                                   -----                     ---------->DOF2     <----------DOF2                      --------->ATHB12<------ >DOF2            <---------ANAC46  <-----------GT1                       <------ZmHOX2a(1)  <-------   caaaccctattcttcgattttcgtagagcagattattgtttccctttaggtgtctccatagtttctgaagagagaaggatggattgggacagcgttgctg  3576200                                                    <---------ANAC58                 ------>ZmHOX2a(1)         <---------WOX13(1)                    --------->TOE1(1)              <---------ANAC58       --------->ATHB12                       ------>ZmHOX2a(1)               <---------ANAC58      <---------YAB1                      --------->ARR14(2)               <-------TEIL  <------ZmHOX2a(1)                   <------NtERF2 <---------ANAC46      --------->ARR14(1) ---------TOE2(3)                    <---------DEAR3(2)                   --------->CCA1(2)    <----- -----ZAT2                          --------->ETT(1)<---------ANAC58     --------->ARR11(1)    ------ -----At4g35610                     <---------DEAR3(1)                   <---------GLK1(2)    <------ ---->At4g35610          ----------->GT1  <---------ARR14(2)  <---------ARR11(3) --------->ARR14(2) ---->ZAT2              <-----------------------TaNAC69(2)    --------->ARR11(3) <---------ARR14(2) ---RAP2.6(2)  <---------ANAC46    <---------ORA47(1)      <------NtERF2 --------->ARR14(2)   <------ --At4g35610   ----------->GT1    <-----------HVH21--------->MYB52(2)    <---------ARR14(2)<---------   ctgaggatgtgattgaggcgttaagagaggttgaatggtcggcgagtcctcgttccttggccgagttcttctccagattcgcgtttcctcgctctttctc  3576300           <---------RAP2.6(3)                                              --------->GLK1(2)          --------->RAP2.3(3)                                       <---------ARR14(2)          --------->RAP2.3(2)                                       --------->ARR14(2)          --------->DEAR3(1)                                --------->AHL20(1) ----------AGL15                        <-----------GT1     <---------ARR11(3)      <-------GAMYB --------->AGL15                      <-----------GT1       --------->ARR11(3)     --------->ALFIN1 -----------AGL3                     --------->YAB1        <---------AHL20(2) <---------LBD16 -----------AGL2                    <---------YAB1       <---------AHL20(2) <---------ARR14(2) -DOF2  --------->At4g35610       <---------ZAT6         --------->AHL20(2) --------->ARR14(2)    <--   taaatggatgagccgtctcaaatgcaatctctactagtattatcaccctctctctctatatatatattcgtatttgcaaatcggggtgttgatttttgtt  3576400                                                                                               <-----                                                                <---------WRKY18(1)            ------                     <----------ID1                            --------->WRKY12          <---------WOX13(1)               --------->At4g35610                    <---------ANAC46                 --------->ATHB12        <-----------RAV1(1)  <-----------GT1     <---------ANAC58                     <---------YAB1     ------>ZmHOX2a(1)<------ZmHOX2a(1)          <---------ANAC58                 --------->ZAT2 -------YAB1   <---------At4g35610     ------>ZmHOX2a(1)       --------->WRKY38(1)<---------ZAT2-----   ttgattcctcttgttgcagctataggacgaattacttcatcctcttcgttttcgttctgggtatgttgaccttcttgtgtttcaagctgtgattgagaaa  3576500  Previous    Next  AGI:  At3g11402.1    Description:  DC1 domain-containing protein. similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11385.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11370.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11390.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like (InterPro:IPR011424); contains InterPro domain DC1 (InterPro:IPR004146) Range:  from: 3573522    to: 3575648    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g11395.1    Description:  pre-tRNA. tRNA-Val (anticodon: CAC) Range:  from: 3575850    to: 3575923    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g11397.1    Description:  prenylated rab acceptor (PRA1) family protein. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT5G05987.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72272.1); contains InterPro domain Prenylated rab acceptor PRA1 (InterPro:IPR004895) Range:  from: 3576023    to: 3578088    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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