Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->LBD16                                                                                         ------->GAMYB                                                                                         --------->ANAC46                                                                                        --------->MYB46(3)                                                                                       <---------At5g28300                                                                                      --------->ARR14(2)                                                                                      --------->MYB52(1)                                                                                  --------->ZAT6                                                ------->TEIL                    <-----------GT1          --------->ANAC58         --------->ANAC58                          --------->ARR14(2)          --------->ANAC58         --------->ANAC58                          <---------ARR11(3)          --------->ANAC46      ---------->DOF2--------->MYB52(1)            <---------ARR14(2)       <-------TEIL<---------AHL20(2)   --------->AtLEC2                     --------->ARR11(3)     <      --------->CCA1(2)   <---------RVE1(1)   ------->GAMYB            <--------P<---------At5g28300-     --------->ARR14(2)  --------->ARR11(3)  <---------MYB52(2)    <---------ANAC46   <---------ARR14(2)     <---------ARR14(2)  <---------ARR11(3)  --------->MYB46(3)---------->DOF2--------->CCA1(2)    <-   tacagaagattcacgaactaataaaacgatatttcaaaggcaatgcaacgaaccgtgagaaatactaaagcgggtagaagatttacagtaaccgcaagtt  3521000                                                --------->ANAC58                                                --------->ANAC58                                              <---------ALFIN1                                              --------->AtMYB61                                             --------->MYB46(3)                                      <---------At4g35610                                      <---------ATERF1(1)                                      --------->At4g35610                                     --------->DEAR3(1)                                   ------>NtERF2--------->ANAC46                                  ---      <---------ANAC58             --------->LBD16   <---------At4g35610                      <------      <---------ANAC58             <---------At4g35610                                        ------- <---------AHL20(2)               --------->DEAR3(1) --------->At4g35610                  ------>NtERF2 ---------AHL20(2)                --------->ANAC46<---------At4g35610                    --------->ANAC46 -------->AHL20(2)      --------->ZAT14     ------>NtERF2                       <----------DOF2------ --------WOX13(1)       <---------ZAT14  ------>NtERF2     --------->ANAC46--------------------->WRI1   gatttatttcgtccacaatcagcgactatactctctccgccgatgccaccacggctgctactcgcctcgttcttcgtcttcgctttcttcgacgacatga  3521100                                                                             <---------ANAC46                                                                          --------->ANAC46      --------->GLK1(2)         --------->At4g35610                ------>ZmHOX2a(1)      <---------ARR14(2)--------->YAB1   --------->LBD16         ----------->RAV1(2)      --------->ARR14(2)<---------ICU4  --------->LBD16       --------->HSFC1(2)                    - --->ZmHOX2a(2)       --------->GLK1(2)<---------LBD16        <---------HSFB2a(1)                   - ---YAB1             *TSS      ----------->ARR10              <---------HSFC1(2)                    - -->ICU4 --------->ANAC46     <---------ZAT18   >>>>>>>>>TBF1 --------->HSFB2a(1)       <-----------GT1 --->ATHB12       --------->YAB1<---------At4g35610   <------ZmHOX2a(1)<---------WRKY38(1) <---------MYB59   tcggagagaatccacaacgatgagaatcatggtgagctcttcccggtgaagaagaaggagaagaagctcctgatcaacgccttgtagtttttaccaaaat  3521200                                       <---------ANAC58                                     <---------O2                                     <---------ANAC55(2)                                     <---------ANAC46                                     --------->ANAC58                                     --------->O2                                     ================================================bZIP_DOF                                     --------->TGA1a                                     <---------TGA1a                                     --------->ANAC58                                  ----------->HVH21                                 <-----------HVH21                                 <-----------TGA1                                --------->ANAC58                                --------->bZIP60(2)     --------->ANAC58           --------->ANAC58     --------->ANAC46           --------->ANAC46     --------->ANAC58    --------->AHL20(2)                   ======================================= -------->ANAC58        --------->AHL20(2)   --------->ARR11(3)           ---------->DOF2  ---------- -------->ANAC46      --------->TOE1(3)<---------ANAC46       <---------MYB59  ------------>CBF -------->ANAC58      --------->TOE2(3)<---------ANAC58       ----------------->AGL3  <--------------   gaacgacacgaagttttcttctaacattaaaaaaacgtcacgcgtgttatcttgtcaatttgggcctaattttagttaaagcccaattcccatcaaagta  3521300                     --------->AHL20(2)                    --------->AHL20(2)                             --------->TOE1(3)             <------ZmHOX2a(2)                             ------>NtERF2           --------->At4g35610                             <------NtERF2        <---------MYB52(1)                                 --------->LBD16        <------NtERF2<---------AHL20(2)                   --------->RAP2.6(2)       <---------RAP2.6(3)                                --------->ANAC46      >>>>>>>>>AtERF-4                                    --------->RAP2.3(2)      --------->RAP2.3(2)                                 --------->DEAR3(1)      >>>>>>>>>AtERF-3--------->WOX13(1)   <---------MYB52(1)  *TSS--------->TOE2(3)  <----------DOF2     --------->RAP2.3(1)            --------->ANAC46      --------->RRTF1(2)         <---------ICU4 =MADS_MADS<---------At4g35610      --------->ANAC58     --------->RAP2.3(1)   --------->YAB1 >DOF2--------->RAP2.3(3)           --------->ANAC58     <---------LBD16       --------->REM1(1) -AGL15<-----------HVH21 --------->YAB1------->TEIL    ------>ZmHOX2a(2)    --------->TOE2(3)   aacaagagccgtcagatcacaaattaatcaaaacaaacacgaaccgttagatttagatcgccgcaaaaaccctaacttccttcatcatctttcccaaaca  3521400                                                                    --------->MYB46(3)                                                                  ----------->RAV1(1)                                                                 <----------ID1                   ---                                                               --------->ANAC58              --------                                                         --------->YAB1                     ---------                                            <----------DOF2<---------REM1(1)             <---------ANAC46   --------->LBD16                          ------>ZmHOX2a(1)  --------->ANAC58          <---------ANAC58  --------->ANAC46              ---------->DOF2    ----------->RAV1(1)---------->DOF2    <---------ANAC58   ctctccgaaacagagaacattttgagtttttatctaaagctaaatcctttgagcaacaatggtgaaggcaacaaaagcagagaagaagatagcgtatgac  3521500                                                <------NtERF2                                                <---------At4g35610                                                --------->ATERF1(1)                                                ------>NtERF2  <------ZmHOX2a(2)                                              <---------ANAC58 ==============================HOX2a_HOX2a                                              <---------ANAC58--------->ARR14(2)                                              <---------ANAC46<-----------ARR10                                              <---------DEAR3(1)                                              <---------RAP2.6(2)                                              <---------RAP2.3(2)                                              <---------RAP2.3(3)                                              <---------RRTF1(3)                                              <---------RRTF1(2)                                   ------>ZmHOX2a(2)     <-----------HVH21                                  <------ZmHOX2a(2)  <---------WRKY12                                 <---------ARR11(3)  <---------WRKY38(1)                                 <-----------ARR10----------->HVH21                                 <---------AGP1<---------RAP2.3(1)                                 --------->AGP1<---------RRTF1(1)      --------->At4g35610                                 --------->ARR11(3) --------->SPL7     <---------ZAT2                       --------->ARR14(2)    <---------LBD16  <---------ARR14(2)                <----           <---------ZAT2        --------->ARR14(2)<------NtERF2------>ZmHOX2a(2)          --------->ARR11(3)           <---------At4g35610   <---------ARR14(2)------>NtERF2=============================HOX2a_HOX2a ------>ANAC46         <---------ARR14(2)<---------MYB46(3) <---------DEAR3(2)         ---------->DOF2 --->HVH21 --------->At4g35610  <---------CCA1(2)<---------ANAC46      <---------At4g35610 <---------ARR11(3) >SPL7 <-----------HVH21       ----------->ARR10--------->At4g35610    --------->ZAT2 <------ZmHOX2a(1)   acaaaactatgtcagcttatcgacgaatacactcagatcttagtcgttgcggcggacaacgtcggatcgactcagcttcagaacatcaggaaaggtcttc  3521600                                                          --------->ANAC46                                                     --------->ARR14(2)                                              <---------ANAC58        <---------HSFB2a(2)                                         --------->HSFB2a(1)          --------->HSFB2a(2)     -------                                         <---------HSFB2a(1)         <---------LBD16      ------->TEIL                                    <---------YAB1   <---------ARR14(2)         <---------ZAT14                                  --------->YAB1<---------MYB52(1)<---------GLK1(1)       <---------ARR14(2)                                 <---------YAB1<-------GAMYB  --------->LBD16   --------->ZAT14          <---------MYB46(3)--------->ZAT6    <---------ANAC58<---------HSFB2a(2)         --------->ARR14(2) -----ANAC46               --------->ZAT18    <---------ANAC46--------->HSFB2a(2)   --------->ICU4   gtggagactcagtggttctcatgggtaagaacactatgatgaaacgttccgttagaatccactccgagaactctggaaacactgcaattttgaatctgct  3521700                     <---------GLK1(2)                    <---------ZAT2         ----------->GT1        <---------TOE1(3)       <-----------RAV1(2)     ------>ZmHOX2a(1) <---------ALFIN1   --------->At4g35610           --------->ANAC46                               ---- -->At4g35610       <---------At4g35610   <----------DOF2          ----------->GT1 <-----------GT1   tcccctccttcaggttaatctcagcttcttcgaaaatgttgagactttctatacgctggagacttgagattgtaaatttgcgatttttctgtgtttgttt  3521800                    ------>ZmHOX2a(2)                  --------->ARR11(3)                  <---------ARR11(3)    --------->ANAC58            --------->MYB55(2)          --------->ANAC58            <---------MYB46(3)      =========================HOX2a_HOX2a            <------MYB46(1)         ------>ZmHOX2a(2)            --------->MYB52(2)     --------->At4g35610    <--------P            <------MYB83   ---------->DOF2               <-------GAMYB           <---------TOE2(2)      <---------ARR11(3)    <---------MYB46(3) --------->ATHB12    ------          <---------MYB52(1) --------->DAG2            <---------AtMYB61  <-------TEIL   <---------At4g35610 ----->ATHB12   ----------->ARR10 --------->ARR11(3)  <------ZmHOX2a(1)  <--------P      --------->At4g35610   gattagggaaacgttggtttgatcttcactaaaggtgatctcaaggaagtgagcgaggaggttgccaaatacaaggttgattagtctgtgtagctgatct  3521900  Previous    Next  AGI:  At3g11240.1    Description:  arginine-tRNA-protein transferase, putative / arginyltransferase, putative / arginyl-tRNA-protein transferase, putative. similar to ATE1 (DELAYED LEAF SENESCENCE 1), arginyltransferase [Arabidopsis thaliana] (TAIR:AT5G05700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41343.1); similar to Os05g0446800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055690.1); contains InterPro domain Arginine-tRNA-protein transferase, N-terminal; (InterPro:IPR007471); contains InterPro domain Arginine-tRNA--protein transferase 1, eukaryotic (InterPro:IPR017137); contains InterPro domain Arginine-tRNA-protein transferase, C-terminal; (Inte Range:  from: 3518490    to: 3521121    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g11250.1    Description:  60S acidic ribosomal protein P0 (RPP0C). Identical to 60S acidic ribosomal protein P0-3 (RPP0C) [Arabidopsis Thaliana] (GB:P57691;GB:Q8LAM3); similar to 60S acidic ribosomal protein P0 (RPP0B) [Arabidopsis thaliana] (TAIR:AT3G09200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41330.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) Range:  from: 3521363    to: 3523007    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version