Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                   --------->YAB1              ------                                                    --------->ARR11(3)                       <-------                                          --------->YAB1         --------->GLK1(2)  --------->ARR14(2) ----------DOF2                          <---------YAB1   ---------->DOF2           --------->ARR11(3) ------ARR11(3)                  --------->TOE2(3)  <---------ARR11(3)              <---------ARR14(2) ----->ARR11(3)         ---------->DOF2--------->YAB1<------ZmHOX2a(2)              <---------ARR11(3)   agcttttaaaaaaaaaaaaaaaaacccaaagaatacatcaaaaatgataactaagatcagaaaagagaatcaaaatgttgaatgaagaacttcaaatcaa  3520700                                                                   --------->MYB46(3)                                                                   <---------MYB52(2) <---------At5g28300                                              --------->YAB1     <-----------GT1      <---------TOE2(3) -------->ANAC58                         --------->AHL20(2)   <---------REM1(1)      <---------DOF5.7(2) -------->ANAC58                      --------->AHL20(1)     <---------TOE2(3)       --------->MYB52(1) ---->DOF2                 --------->ANAC46--------->YAB1 <---------WOX13(1)       --------->DOF5.7(2) --ATHB12      <----------DOF2       --------->YAB1 --------->TOE1(2)   --------->TOE2(3)--------->At5g28300   agaagcaaaaattcaaactttgtgtttacacataatcaaacatattaataagaacatgagattgatgtaacaaaccttgatagtcattaacggtgagtct  3520800                                               <---------ARR11(3)                                               --------->ARR11(3)                                   ----------------->AGL1                                   --------------->AGL15                                   ----------------->AG                                   <---------------AGL15                                  ----------------->AGL1                                  <-----------------AG                                  ----------------->AG<---------AHL20(2)                ------->GAMYB                                  <-----------------AGL1                               --------->MYB46(3)                         --------->WOX13(1)    --------->GLK1(2)                       --------->ANAC46                       <---------ATHB12   ----------->GT1                     <------ZmHOX2a(2)                       --------->ICU4    ----------->GT1                     --------->AGP1                     <---------GLK1(1) --------->ARR14(2)                   <---------At4g35610                     --------->GLK1(1) <---------ARR14(2)                   --------->At4g35610           --------->TOE1(2)      ----------------->AGL2           --------->ANAC46    <----------ID1   ctctgtccataaacctgcaatggaaatcattcacattcccaaatcggaaaatctttttatttgacttatacgatagtcagatcaattcaacgacaaacta  3520900                                                                                          --------->LBD16                                                                                         ------->GAMYB                                                                                         --------->ANAC46                                                                                        --------->MYB46(3)                                                                                       <---------At5g28300                                                                                      --------->MYB52(1)                                                                                      <---------ARR14(2)                                                                                  --------->ZAT6                                                ------->TEIL                    <-----------GT1          --------->ANAC46         --------->ANAC58                          --------->ARR14(2)          --------->ANAC58         --------->ANAC58                          --------->ARR11(3)          --------->ANAC58      ---------->DOF2--------->MYB52(1)            <---------ARR11(3)       <-------TEIL<---------AHL20(2)   --------->AtLEC2                     <---------ARR14(2)     <      --------->CCA1(2)   <---------RVE1(1)   ------->GAMYB            <--------P<---------At5g28300-     --------->ARR14(2)  <---------ARR11(3)  <---------MYB52(2)    <---------ANAC46   --------->ARR14(2)     <---------ARR14(2)  --------->ARR11(3)  --------->MYB46(3)---------->DOF2--------->CCA1(2)    <-   tacagaagattcacgaactaataaaacgatatttcaaaggcaatgcaacgaaccgtgagaaatactaaagcgggtagaagatttacagtaaccgcaagtt  3521000                                                --------->ANAC58                                                --------->ANAC58                                              --------->AtMYB61                                              <---------ALFIN1                                             --------->MYB46(3)                                      <---------ATERF1(1)                                      --------->At4g35610                                      <---------At4g35610                                     --------->DEAR3(1)                                   --------->LBD16   --------->At4g35610                          ---      <---------ANAC58             <---------At4g35610                                        -------      <---------ANAC58             ------>NtERF2--------->ANAC46                              <------ <---------AHL20(2)               --------->DEAR3(1) <---------At4g35610                  ------>NtERF2 ---------AHL20(2)                --------->ANAC46<---------At4g35610                    --------->ANAC46 -------->AHL20(2)      <---------ZAT14     ------>NtERF2                       <----------DOF2------ --------WOX13(1)       --------->ZAT14  ------>NtERF2     --------->ANAC46--------------------->WRI1   gatttatttcgtccacaatcagcgactatactctctccgccgatgccaccacggctgctactcgcctcgttcttcgtcttcgctttcttcgacgacatga  3521100                                                                             <---------ANAC46                                                                          --------->ANAC46      --------->ARR14(2)        --------->At4g35610                ------>ZmHOX2a(1)      --------->GLK1(2) --------->YAB1   --------->LBD16         ----------->RAV1(2)      <---------ARR14(2)<---------ICU4  --------->LBD16       --------->HSFC1(2)                    - --->ZmHOX2a(2)       --------->GLK1(2)<---------LBD16        --------->HSFB2a(1)                   - -->ICU4             *TSS      ----------->ARR10              <---------HSFB2a(1)                   - ---YAB1 --------->ANAC46     <---------ZAT18   >>>>>>>>>TBF1 <---------HSFC1(2)        <-----------GT1 --->ATHB12       --------->YAB1<---------At4g35610   <------ZmHOX2a(1)<---------WRKY38(1) <---------MYB59   tcggagagaatccacaacgatgagaatcatggtgagctcttcccggtgaagaagaaggagaagaagctcctgatcaacgccttgtagtttttaccaaaat  3521200                                       <---------ANAC46                                     <---------TGA1a                                     --------->TGA1a                                     --------->O2                                     <---------O2                                     <---------ANAC55(2)                                     --------->ANAC58                                     --------->ANAC58                                     <---------ANAC46                                     ================================================bZIP_DOF                                  ----------->HVH21                                 <-----------TGA1                                 <-----------HVH21                                --------->bZIP60(2)                                --------->ANAC46     --------->ANAC58           --------->ANAC58     --------->ANAC46           --------->ANAC58     --------->ANAC58    --------->AHL20(2)                   ----------------->AGL3  <-------------- -------->ANAC58        --------->AHL20(2)   --------->ARR11(3)           ---------->DOF2  ---------- -------->ANAC58      --------->TOE2(3)<---------ANAC58       ======================================= -------->ANAC46      --------->TOE1(3)<---------ANAC58       <---------MYB59  ------------>CBF   gaacgacacgaagttttcttctaacattaaaaaaacgtcacgcgtgttatcttgtcaatttgggcctaattttagttaaagcccaattcccatcaaagta  3521300                     <---------AHL20(2)                    --------->AHL20(2)                             --------->TOE2(3)             <------ZmHOX2a(2)                             <------NtERF2           --------->At4g35610                             --------->LBD16        <---------MYB52(1)                                 ------>NtERF2        <------NtERF2--------->AHL20(2)                   --------->DEAR3(1)       <---------RAP2.6(3)                                --------->RAP2.6(2)      >>>>>>>>>AtERF-3                                    --------->ANAC46      >>>>>>>>>AtERF-4--------->WOX13(1)                  --------->RRTF1(2)      --------->RAP2.3(2)                  <---------MYB52(1)  *TSS--------->TOE1(3)  <----------DOF2     --------->RAP2.3(1)            --------->ANAC58      --------->RAP2.3(2)        <---------ICU4 -AGL15<-----------HVH21            --------->ANAC58     <---------LBD16       --------->REM1(1) >DOF2--------->RAP2.3(3)--------->YAB1------->TEIL      --------->RAP2.3(1)   --------->YAB1 =MADS_MADS<---------At4g35610      --------->ANAC46   ------>ZmHOX2a(2)    --------->TOE2(3)   aacaagagccgtcagatcacaaattaatcaaaacaaacacgaaccgttagatttagatcgccgcaaaaaccctaacttccttcatcatctttcccaaaca  3521400                                                                    --------->MYB46(3)                                                                  ----------->RAV1(1)                                                                 <----------ID1                   ---                                                               --------->ANAC58              --------                                                         --------->YAB1                     ---------                                            <----------DOF2<---------REM1(1)             <---------ANAC58   --------->LBD16                          ------>ZmHOX2a(1)  --------->ANAC58          <---------ANAC58  --------->ANAC46              ---------->DOF2    ----------->RAV1(1)---------->DOF2    <---------ANAC46   ctctccgaaacagagaacattttgagtttttatctaaagctaaatcctttgagcaacaatggtgaaggcaacaaaagcagagaagaagatagcgtatgac  3521500                                                --------->ATERF1(1)                                                <------NtERF2                                                ------>NtERF2  <------ZmHOX2a(2)                                                --------->At4g35610                                              <---------ANAC58 ==============================HOX2a_HOX2a                                              <---------ANAC46--------->ARR14(2)                                              <---------ANAC58<-----------ARR10                                              <---------RRTF1(2)                                              <---------DEAR3(1)                                              <---------RAP2.6(2)                                              <---------RAP2.3(2)                                              <---------RAP2.3(3)                                              <---------RRTF1(3)                                   ------>ZmHOX2a(2)     <-----------HVH21                                  <------ZmHOX2a(2)  <---------WRKY12                                 <-----------ARR10----------->HVH21                                 <---------AGP1<---------RRTF1(1)                                 --------->AGP1<---------RAP2.3(1)     <---------At4g35610                                 --------->ARR14(2)  <---------WRKY38(1)                                 --------->ARR11(3) --------->SPL7     <---------ZAT2                       --------->ARR14(2)    <---------LBD16  <---------ARR14(2)                <----           <---------At4g35610   <---------ARR11(3)<------NtERF2=============================HOX2a_HOX2a           --------->At4g35610   <---------ARR14(2)------>NtERF2------>ZmHOX2a(2)          <---------ARR11(3) ------>ANAC46         <---------ARR14(2)<---------MYB46(3) <---------DEAR3(2)         ---------->DOF2 --->HVH21 <---------ZAT2       <---------CCA1(2)<---------ANAC46      --------->At4g35610 --------->ARR11(3) >SPL7 <-----------HVH21       ----------->ARR10<---------At4g35610    --------->ZAT2 <------ZmHOX2a(1)   acaaaactatgtcagcttatcgacgaatacactcagatcttagtcgttgcggcggacaacgtcggatcgactcagcttcagaacatcaggaaaggtcttc  3521600  Previous    Next  AGI:  At3g11240.1    Description:  arginine-tRNA-protein transferase, putative / arginyltransferase, putative / arginyl-tRNA-protein transferase, putative. similar to ATE1 (DELAYED LEAF SENESCENCE 1), arginyltransferase [Arabidopsis thaliana] (TAIR:AT5G05700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41343.1); similar to Os05g0446800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055690.1); contains InterPro domain Arginine-tRNA-protein transferase, N-terminal; (InterPro:IPR007471); contains InterPro domain Arginine-tRNA--protein transferase 1, eukaryotic (InterPro:IPR017137); contains InterPro domain Arginine-tRNA-protein transferase, C-terminal; (Inte Range:  from: 3518490    to: 3521121    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g11250.1    Description:  60S acidic ribosomal protein P0 (RPP0C). Identical to 60S acidic ribosomal protein P0-3 (RPP0C) [Arabidopsis Thaliana] (GB:P57691;GB:Q8LAM3); similar to 60S acidic ribosomal protein P0 (RPP0B) [Arabidopsis thaliana] (TAIR:AT3G09200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41330.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) Range:  from: 3521363    to: 3523007    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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