Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->LBD16                                 <------NtERF2                                 <---------At4g35610                             <---------SPL7                       ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                      --------->CCA1(2)                     <-----------ARR10                     --------->AGP1                                        <--------P                     <---------AGP1       --------->ARR14(2)           ------>ZmHOX2a(2)                     --------->ARR11(3)   --------->GLK1(2)           <------ZmHOX2a(2)                     <---------ARR11(3)   <---------ARR14(2)         <---------ARR14(2)                     <---------ARR14(2)   <-----------ARR10         ------->GAMYB           --------->At4g35610   --------->At4g35610               --------->MYB46(3)    <-------TEIL     --------->ARR14(2)   --------->ARR11(3)  ------>ZmHOX2a(2) --ZmHOX2a(1)       <---------CCA1(2)     <---------ARR11(3)<---------ARR11(3) ->MYB52(1)<---------At4g35610 --------->SPL7         --------->ARR11(3) ----------->GT1       ------   actatatacattcagataacacagatctgagcgtccgcagagaaaatctgatcagagaacttgatctcaacgatcgggtagaattgagaacagaatgaaa  3491500                                ------>MYB83                           <---------ARR14(2)                  --------->ALFIN1                                                                  -             <-----------GT1    ------>MYB46(1)                                                    --        --------->YAB1     --------->ARR14(2)                                                     <--     --------->WOX13(1)<---------At4g35610            --------->REM1(1)                           <-- ->TEIL<---------ATHB12--------->At4g35610<---------GLK1(1)         ----------->GT1               ---   cttgaatcaatcatataacagtgtgagcagaaccaaatcgatagaaatcagagactacaactatagaaacatgttaatcgtccaaaattttagctcgatt  3491600                                                                 ------>NtERF2                                                                 <---------RAP2.6(3)                                                                --------->DREB2C(2)                                                                --------->ANAC46                                                                --------->ANAC58                                                                --------->RRTF1(2)                                                                --------->RAP2.3(3)                                                                --------->DEAR3(1)                                                                --------->RAP2.3(2)                                                                --------->RAP2.6(2)                                                                <---------ATERF1(2)                                                                --------->ATERF1(2)                                                                ------->GAMYB                                                                --------->RRTF1(3)                                                                --------->ANAC58                                                               --------->ATERF1(1)                 <-                                                               --------->RAP2.3(1)                <--                                              --------->ATHB12 --------->RRTF1(1)               -----                                              <---------ICU4   --------->ERF1                   -----                                              --------->YAB1   --------->MYB46(3)        <---------ANAC46                                              -------->HAHB4  <---------At4g35610       ------>NtERF2                                           <---------ICU4     <---------ATERF1(1)       <------NtERF2       <---------AHL20(2)               --------->YAB1<------NtERF2  --------->ICU4   <---------DEAR3(1)       --------->AHL20(2)      <------ZmHOX2a(1)     ------>NtERF2<------NtERF2      <---------LBD16 -------->LBD16              --------->MYB59 --------->ICU4   --------->ZAT2        ------>ZmHOX2a(2) ------->LBD16             <---------MYB52(1)<---------YAB1   --------->At4g35610  <------ZmHOX2a(2) -------HSFB2a(2)         <-----------HVH21--------->YAB1  <---------At4g35610    --------->ARR14(2) -------LBD16          <---------At5g28300--------->ICU4   --------->At4g35610    <---------ARR14(2)- ------>HSFB2a(2)--------->ZAT14      ------>ZmHOX2a(1)<----------DOF2    <---------WRKY18(1)   <----   cccggagatttaaaaacagagaactcaccgttaggacctccttcataatgatgggcgcgttagcagccgccatgtttgacctcagatcgcggcgagagaa  3491700                               <---------PCF5                                              ==========                      ---------->DOF2                                                      ------>ZmHOX2a(2)                   --------->ANAC58      ------->GAMYB                                    <------ZmHOX2a(2)                   --------->ANAC58     --------->MYB46(3)              --------->CCA1(2) --------->CCA1(2)                   --------->ANAC46    --------->At4g35610             --------->ARR14(2) ===========               ==================HOX2a_HOX2a                           <---------ARR11(3)--------->AGP1               <------ZmHOX2a(2)       <---------At4g35610             --------->ARR11(3)<---------ARR14(2)         --------->GLK1(2)<------ZmHOX2a(1)  <------NtERF2             <---------ARR14(2)--------->ARR14(2)   ------>NtERF2  <---------LBD16     <---------DOF5.7(2)          ==============================HOX2a_HOX2a  <---------PCF5  --------->LBD16     --------->MYB52(1)           ===============================HOX2a_HOX2a --------LBD16--------->ARR11(3)     <---------WRKY12              <------ZmHOX2a(1)     <-----------ARR10 -------LBD16 --------->ARR14(2)     <---------WRKY38(1)         <---------TOE2(3)       --------->ARR11(3) ---->ARR14(2)<---------ARR14(2)    --------->DOF5.7(2)         --------->MYB52(1)       <---------ARR11(3) ---->GLK1(2)--------->At4g35610   <-----------HVH21          <---------MYB52(2)    ------>NtERF2 -------->LBD16--------->CCA1(2) --------->DEAR3(2)  <---------ANAC58 <---------HSFB2a(1)<---------AGP1 -----ARR14(2)--------->AGP1  ----------->HVH21      <---------ANAC58----------->ARR10  <---------CCA1(2)   tccggggccagaatcagatccacggaaaggacgggaccgtcaacggccgagcgatgcgagagaaactaaggaagatttgaaatcgcagccagatctgagg  3491800                     <---------MYB46(3)      <----------DOF2                 <---------YAB1            ---------->ID1                 --------->ICU4           <-----------------AGL1           --------->DAG2         <-------TEIL         ---------->DOF2         --------->ARR14(1)      <------ZmHOX2a(1)<---------ANAC46   <-----------GT1                    ======================== ----------->HVH21  <---------AtMYB61<---------MYB52(1)                      <------ZmHOX2a(2) ============HOX2a_HOX2a         --------->GLK1(2)             ----------->TGA1 ============HOX2a_HOX2a        <---------GLK1(2)   ---------->DOF2   ---------->DOF2  <-----------HVH21   caagtgaaggagaaaggtgatgatggtggagagagattcgtttttttctttttggaaagtgagaaatgacgaaatagcgatccaatcggagtcactcgtc  3491900                                                                           --------->ANAC55(2)                                                     <---------TOE1(1)     <---------ANAC55(2)                                                     <---------TOE2(1)     <---------ANAC58                              <-------PIF5          --------->SPL7         <---------ANAC58                              ------->PIF5     --------->At4g35610         <---------ANAC55(1)                             <---------ANAC58  <---------At4g35610         <---------ANAC46                             <---------ANAC46  <---------ZAT2             <---------LBD16                ---------->DOF2           ----------->RAV1(2)            --------->CCA1(2)                --------->MYB52(1)        <---------ANAC58               --------->MYB52(1)              *TSS           <---------bZIP60(2)  <---------SPL7         <-----------GT1 --------->ARR14(2)      <------ZmHOX2a(1)      <---------ANAC58  --------->ZAT2       ---------->DOF2      <---------ARR14(2) ============HOX2a_HOX2a--------->CCA1(2) <---------ANAC58   <----------DOF2    <-------TEIL   gaatataaggagagaaaccaaaggagagacgacgtgctacaagtgcctgagctgtacgatgtgcttttgccaaagttacgggttcggatagtattcgggt  3492000                                             --------->ANAC58                                             --------->ANAC58                                             --------->ANAC46                                      --------->ANAC58                                      --------->ANAC46                                      --------->bZIP60(2)                                      <---------bZIP60(1)                                      --------->TGA1a                                      --------->bZIP60(1)                                      ========================bZIP_DOF                                      <---------O2                                      --------->ANAC58                                              -                                      --------->O2                     <---------TOE2(2)            <                        <-----------HVH21  --------->ANAC58            <---------TOE1(2)           <-                      <---------MYB46(3)   <---------ALFIN1         <---------ANAC58             ----                    <---------LBD16   <---------TGA1a          <---------AHL20(2)          <---------ATHB12           ----------->GT1          <-----------GT1<---------DAG2   <---------ANAC46    <---------WRKY12           <---------ANAC46       <-----------HVH21<----------DOF2  <---------ANAC58    <---------WRKY38(1)          --------->LBD16 <---------ANAC46 --------->ANAC58   --------->AHL20(2)       --------->WRKY18(1)   cgagtttcaaaccgcgtaaatcgacgggtcgggttttgtcacgacacacactactttttgggaattttatgcgtatgttttgagcaatggtcaatgactc  3492100                                                          >>>>>>>>>>AGL20                                                          >>>>>>>>>>AGL22                                                          >>>>>>>>>>AGL24                                                       --------------->AGL15                                                       <---------------AGL15                                                      <-----------------AGL3                                                      ----------------->AGL3                                                      ===============================================   ----------->GT1                                    <-----------------AGL2  <---------YAB1                               --------->AHL20(2) -------->YAB1                                 <---------AHL20(2)                             <------ ---------ICU4                                 <---------AHL20(1) ------------------------>ANAC81 --------ATHB12                                --------->AHL20(1)<---------At4g35610          ------- ----->WOX13(1)<---------TOE2(3)              --------->AHL20(2) --------->At4g35610       <---------   aatcatggttaaaaattaagatgaacacaaacgagaacgaagtttgaaataaattttctaaatatggagatgaaacaaaaaaaaaaaaactttttaccaa  3492200              --------->ANAC58              --------->ANAC46              --------->ANAC58       --------->YAB1          --------->CCA1(2)         <---------YAB1                     <---------AHL20(2)  <---------ANAC46         --------->ARR11(3)   --------->ARR11(3)                  <---------AHL20(2)       <---------AtLEC2     ---------->DOF2          <---------ARR11(3)                  --------->AHL20(2)       <---------ANAC58 =========MADS_MADS          <---------CCA1(2)               --------->AHL20(1)            <---------ANAC58 ---------AGL15             <---------AHL20(2)               <---------ARR11(3)       --------->ALFIN1 -------->AGL15            --------->AHL20(2)                <---------AHL20(1)       <-----------RAV1(1) --GT1   <---------ARR11(3)--------->YAB1    <---------TOE2(3)--------->AHL20(2)<----------DOF2   aaaaaaaaaaagatatacgaaattttctattatatcttatcaaaattagggtatgaagaccaaaatatttaaatttatgtcgatttaagtgttgcatgaa  3492300                                          --------->ICU4                                     <---------ANAC46           <-----------GT1                                <---------ZAT6               --------->YAB1               --------->YAB1                         --------->AHL20(2)            --------->YAB1             <---------AHL20(2)                         <---------AHL20(2)          <---------ANAC46     <---------AHL20(2)                        --------->AHL20(2)<---------YAB1 <---------YAB1  <---------AHL20(2)       ---                 <---------ANAC46  <---------ZAT14   <---------ANAC55(2) --------->AHL20(2)   <------   aaaatcgtataagaaatttacgtcgatttaattagtgtttagtgaagattgtattacttataattttaactcgaattaaatgatataatcaattttgatg  3492400  Previous    Next  AGI:  At3g11130.1    Description:  clathrin heavy chain, putative. similar to clathrin heavy chain, putative [Arabidopsis thaliana] (TAIR:AT3G08530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41391.1); similar to hypothetical protein OsJ_033574 [Oryza sativa (japonica cultivar-group)] (GB:EAZ19365.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79917.1); contains InterPro domain Clathrin, heavy chain (InterPro:IPR016341); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Clathrin, heavy chain, linker and propeller; (InterPro:I Range:  from: 3482155    to: 3491914    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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