Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                  ---                                                                                                  ---                                                                       --------->ATERF1(1)       ----                                                       ------>ZmHOX2a(1)                         ----                                                   <---------ARR14(2) ------>NtERF2              <---                                                --------->LBD16 ------>ZmHOX2a(2)            --------                                                <---------TOE1(2)     <---------ATERF1(1) --------->TOE1(3)                  --------->MYB52(1)     ------>NtERF2 ================HOX2a_HOX2a        --------->TOE2(3)       --------->AHL20(2)         <---------GLK1(2)--------->ARR14(2)--------->DEAR3(1)<-----------GT1   atcggagaattaaaaaaaaaaaaccgaatttacacaaattctccgacttccaggttcctatttcgatctcgccgactccgatttgaaatttaccttaaag  3417600          <---------ZAT14          --------->ZAT14    ------>ZmHOX2a(2)   <------ZmHOX2a(2)  --------->ARR11(3)  <---------ARR11(3) ------TEIL                                                <---------ANAC58 ------>ARR14(1)                                           <---------ANAC46                         - ------>CCA1(2)                      --------->ATHB12      <---------ANAC58                  <------- ----->ARR14(2)              --------->ZAT2               <---------MYB46(3)      ------>MYB46(1)   < ----->ARR11(1)        ---------->DOF2         ----------->HVH21    <---------YAB1------>MYB83<------ ------ARR14(2)  <---------ANAC46  <---------WOX13(1)     --------->MYB55(2) <---------ARR14(2)<----- -->DOF2 <<<<<<<<<<<<<<<<<LFY--------->At4g35610      --------->ATHB12      <------ZmHOX2a(1)<-------   atacgatctcagtacaatggtttgtgaaagcagctagattgatgggagaatgacagcgattgggtggattatcaaggaggaaccaaatagaattggcttt  3417700        ----------->RAV1(1)      --------->MYB46(3)    ------->TEIL  <-------TEIL --------->ANAC58 --------->ANAC58 ------>MYC3 --ANAC58                                                                                ----------->GT1 -------MYC3                   <-----------GT1  <----------DOF2          ------>ZmHOX2a(1)   *TSS ----DOF2        <---------------AGL15      <---------WRKY45         <-----------GT1    --------->DAG2 ------HVH21     --------------->AGL15      <---------WRKY38(1)   <---------AHL20(2)   ---------->DOF2 --ANAC58       <-----------------AG<---------MYB52(1)      <----------DOF2    --------->MYB46(3)   cacatgcatccaacaaattcaacatttggaaattctccgtttctagtcaactttcttcatttctttatttttttcctgtgaacaaacaaaaaagtaacat  3417800                                 <---------AHL20(1)                <---------AHL20(2)<---------YAB1           <---------AHL20(1)    --------->AHL20(2)           --------->AHL20(1)    --------->AHL20(1)           <---------ARR11(3)   --------->AHL20(2)                                             ------           --------->AHL20(2)   --------->YAB1                    --------->RAP2.6(3)          ------    <------NtERF2              <---------YAB1                     <---------At5g28300          <-----   <---------RAP2.6(3)     <----------DOF2                    <---------ICU4   --------->YAB1  <-----   <-----------HVH21       <---------DAG2         --------->ZAT18<-----------GT1  <---------ICU4  --------->RAP2.6(2) <-----------GT1           <---------At4g35610<---------RAP2.6(2) <---------ANAC55(2)  --------->ANAC46 <---------ICU4<---------AHL20(2)       ------------>CBF    --------->AHL20(2)  <--   ttagccgtcacaaaatattaaaaattacgctttattatattaaggccttgggctcactaatccaatattacggcccataaataaaaatcacatgtctacg  3417900                                                      <---------ALFIN1                                               <-----------GT1                              <------ZmHOX2a(1) --->O2                                     --------->YAB1                                 ---------- --->ANAC55(2)           ----------->HVH21 <---------YAB1                          --------->ZAT6 ----ANAC58 <----------DOF2              --------->YAB1    *TSS  <-------MYC3      --------->AtMYB61 ----ANAC58 <---------DAG2          --------->YAB1 --------->ANAC46  <-------TEIL --------->MYB46(3) ---------HVH21 <-----------GT1  ----------->GT1  ------->GAMYB  ------->MYC3   ------>NtERF2   tgtcaaaacagtcacttttctctatacatgacaggcagtgatattatcataaccctccacttatacacatgttcatttttggcgaccactagaaggagaa  3418000                                                                <------ZmHOX2a(1)                                                                ================================HOX2a_HOX2a                                                          <----------DOF2                                                         <---------ANAC46                                                        <------NtERF2                                   <---------ANAC58    <---------RAP2.6(3)                                   <---------ANAC46   --------->RAP2.6(2)                 <----------                               <---------ZAT14        --------->ATERF1(2)                <------ZmHOX2a(2) --------->ARR14(2)           <---------ANAC46        <---------RAP2.6(2)                ============ <---------ARR11(3)        <---------MYB52(1)         <---------ATERF1(2)               --------->ARR14(2) <---------ARR14(2)     <-------TEIL                 --------->RAP2.6(3)                <---------ARR14(2) --------->ARR11(3)   <---------ARR14(2)----------->GT1------>NtERF2                   <------ZmHOX2a(1) ->GT1      <<<<<<<<<<<<<<<<<LFY   <---------ANAC58 --------->ZAT2                   <---------TOE2(3)   acaaatcttcattccaacaatggcgattcgttgtgtagcgagtagaaaaaccctagccggcttgaaggagacatcatcgaggctattgaggatcagaggg  3418100                                 <---------ICU4             <---------ZAT14                             <---------YAB1            --------->ICU4                         <---------ANAC58            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   --------->ARR11(3)               ----------------->AGL1                   --------->ARR14(2)               <-----------------AGL3    --------->YAB1                   <-----------ARR10              --------->ANAC46           <-------TEIL                   <---------ARR11(3)            --------->DEAR3(1)        --------->ARR14(2)                 ------>ZmHOX2a(1)              --------->ATERF1(1)   --------->AtLEC2        <-----------GT1  <---------ANAC58       --------->DEAR3(2) <------ZmHOX2a(2)      --------->YAB1     <----------DOF2 ------>ZmHOX2a(2)        --------->ARR14(2)  <---------ARR11(3)    --------->ANAC58 -RAV1(2) --------->ANAC46------>ZmHOX2a(1)   <---------ARR14(2)  --------->ARR11(3)    --------->ANAC58 =======================HOX2a_HOX2a   <---------ANAC46 <---------MYB52(1)  <---------ARR14(2)   attcagacttttacgcttcctgatcttccttacgattatggcgcattggaaccggccattagtggagagatcatgcagattcatcaccagaagcatcacc  3418200                    <--------ATHB1                    ---------->DOF2                                      <---------MYB46(3)                    --------->YAB1                                    <-----------RAV1(1)                   <---------ATHB12                              >>>>>>>>>>>>>>>>>LFY                   <---------ATHB51                            <---------ANAC58                   --------->ICU4                              <---------ANAC58                 --------->YAB1                               <---------HSFB2a(1)                <---------YAB1                                --------->HSFB2a(1)              <-----------GT1               --------->ZAT2    <---------HSFC1(2)              --------->YAB1                <---------ZAT2    --------->HSFC1(2)           <---------ICU4         --------->At4g35610      <---------At4g35610       <-----------GT1         <---------At4g35610         --------->GLK1(1)      <<<<<<<<<MYB98<---------ICU4--------->ZAT2         <---------------------WRI1    <---------ZAT18   aggcttatgttactaattacaataatgctcttgagcagcttgatcaagctgtgaacaagggagatgcttccactgttgttaagttgcagagcgccatcaa  3418300              --------->ALFIN1            <---------ANAC46            --------->ALFIN1         <---------DEAR3(1)         <---------AtMYB61        <------NtERF2      <---------DEAR3(1)                               ------>ZmHOX2a(2)      <---------ANAC46                                <------ZmHOX2a(2)     <---------LBD16<---------ANAC58                 <---------ARR11(3)          <------MYB83    ------->GAMYB   <---------ANAC46                 --------->ARR11(3)          <------MYB46(1)   <---------DEAR3(1)             <----------DOF2<-----------GT1             --------->ATHB12   ----- --------->MYB52(1) <---------ANAC58 <------------------------ANAC81        ------>ZmHOX2a(2) -------   attcaacggcggaggtgtgtttgtgtgtctgactctcttttttttttttttttacgatctcgatttctatgtgtttgatcgattggtttgtgtttagatc  3418400                                                <<<<<<<<<<MYB80              <---------YAB1                                               <------MYB83          ----------->GT1        <---------ARR11(3)                     <------MYB46(1)   --------->At4g35610        --------->ARR11(3)                  >>>>>>>>>SARD1    <---------At4g35610                  <- ->ZmHOX2a(2)                               >>>>>>>>>CBP60g   --------->At4g35610                  -- -->ARR11(3)                        <------ZmHOX2a(1)      ---------->DOF2--------->ICU4     ------->TEIL   gtgtttggatgatattagcaaatgaagtagttgatttaggagagaaatttggtttgaacagtgaagctgatgagtaattttgatgaattgggatgaaact  3418500  Previous    Next  AGI:  At3g10915.1    Description:  reticulon family protein. similar to reticulon family protein (RTNLB12) [Arabidopsis thaliana] (TAIR:AT3G54120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41507.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 3415980    to: 3417793    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10920.1    Description:  MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); manganese superoxide dismutase. Identical to Superoxide dismutase [Mn], mitochondrial precursor (SODA) [Arabidopsis Thaliana] (GB:O81235;GB:Q9SRK3); similar to superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative [Arabidopsis thaliana] (TAIR:AT3G56350.1); similar to superoxide dismutase [Raphanus sativus] (GB:AAL07333.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) Range:  from: 3417959    to: 3419858    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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