Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->HSFB2a(1)                 <---------HSFB2a(1)                                   --------->ARR11(3)            <---------HSFB2a(2)                                    ---------->DOF2       ------>MYB46(1)            --------->HSFB2a(2)                               --------->LBD16            ------>MYB83        <---------ARR14(2)                                    ----------->GT1          <---------ALFIN1        --------->ARR14(2)                                   <---------HSFC1(1)        --------->DEAR3(1)       <---------GLK1(1)                                     <---------HSFB2a(2)       --------->AtMYB61   ----------->GT1--------->KAN4(2)         ----------->GT1  --------->HSFB2a(2)      --------->MYB46(3)   <---------HSFB2a(2)                    --------->YAB1    <---------LBD16          ------>NtERF2   --------->HSFB2a(2)                   --------->ICU4  <---------GLK1(2)     <----------DOF2 ------GT1  --------->LBD16       -------->P<---------YAB1--------->GLK1(2)   <---------DAG2      ---   ctgttctgtaaatccgagaaaattctcatcacaaactaccaaaatgatgaaaaaacacaaattctggaaaaaagaactcgcctttgccaccacccatgaa  3417400                      ------>MYB83                      ------>MYB46(1)                      ----------->RAV1(1)                    --------->MYB46(3)                    <---------MYB59                    <---------MYB55(2)                   --------->ANAC46                 ------>NtERF2                 <---------RAP2.6(3)            ------>ZmHOX2a(1)                <---------ETT(2)             <------ZmHOX2a(2)                <---------ETT(1)             =============HOX2a_HOX2a               --------->DEAR3(2)           <---------ARR11(3)           --------->At4g35610              <---------ARR14(2)           <---------At4g35610              --------->ARR14(2)        <---------MYB52(1)             ----------->HVH21      --------->TOE2(3) --------->MYB46(3)  --------->ARR11(3)    ------->TEIL--------->DEAR3(1)   --------->At4g35610                             <---------ANAC55(2) ------>ICU4  --------->At4g35610--------->GLK1(2) ------>ZmHOX2a(1)   <-----------GT1   ctgatgaaccgtaatctgccgacccaacaatcgataatccgatgacgatcctccttcatttcttccatcgaaatcaccatcgatatcacttaaactatcc  3417500                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                       --------->ATERF1(1)       ----                                                       ------>ZmHOX2a(1)                         <---                                                   --------->ARR14(2) ------>NtERF2              ----                                                <---------TOE1(2)     <---------ATERF1(1)    --------                                                --------->LBD16 ------>ZmHOX2a(2)         --------->TOE1(3)                  --------->MYB52(1)     ------>NtERF2 ================HOX2a_HOX2a        --------->TOE2(3)       --------->AHL20(2)         <---------GLK1(2)<---------ARR14(2)--------->DEAR3(1)<-----------GT1   atcggagaattaaaaaaaaaaaaccgaatttacacaaattctccgacttccaggttcctatttcgatctcgccgactccgatttgaaatttaccttaaag  3417600          --------->ZAT14          <---------ZAT14    ------>ZmHOX2a(2)   <------ZmHOX2a(2)  --------->ARR11(3)  <---------ARR11(3) ------TEIL                                                <---------ANAC58 ------>CCA1(2)                                            <---------ANAC46                         < ------>ARR14(1)                     --------->ATHB12      <---------ANAC58                  <------- ----->ARR14(2)              --------->ZAT2               <---------MYB46(3)      ------>MYB46(1)   - ------ARR14(2)        ---------->DOF2         ----------->HVH21    <---------YAB1------>MYB83<------ ----->ARR11(1)  <---------ANAC46  <---------WOX13(1)     --------->MYB55(2) <---------ARR14(2)<----- -->DOF2 <<<<<<<<<<<<<<<<<LFY--------->At4g35610      --------->ATHB12      <------ZmHOX2a(1)<-------   atacgatctcagtacaatggtttgtgaaagcagctagattgatgggagaatgacagcgattgggtggattatcaaggaggaaccaaatagaattggcttt  3417700        ----------->RAV1(1)      --------->MYB46(3)    ------->TEIL  <-------TEIL --------->ANAC58 --------->ANAC58 -------MYC3 --ANAC58                                                                                ----------->GT1 ------>MYC3                   <-----------GT1  <----------DOF2          ------>ZmHOX2a(1)   *TSS ----DOF2        --------------->AGL15      <---------WRKY45         <-----------GT1    --------->DAG2 ------HVH21     <---------------AGL15      <---------WRKY38(1)   <---------AHL20(2)   ---------->DOF2 --ANAC58       <-----------------AG<---------MYB52(1)      <----------DOF2    --------->MYB46(3)   cacatgcatccaacaaattcaacatttggaaattctccgtttctagtcaactttcttcatttctttatttttttcctgtgaacaaacaaaaaagtaacat  3417800                                 --------->AHL20(2)                <---------AHL20(2)<---------YAB1           --------->AHL20(1)    <---------AHL20(2)           <---------ARR11(3)    --------->AHL20(1)           <---------AHL20(1)   --------->AHL20(2)                                             ------           --------->AHL20(2)   --------->YAB1                    --------->RAP2.6(3)          ------    <------NtERF2              <---------YAB1                     <---------At5g28300          <-----   <-----------HVH21       <----------DOF2                    <---------ICU4   --------->YAB1  <-----   <---------RAP2.6(3)     <---------DAG2         --------->ZAT18<-----------GT1  <---------ICU4  --------->ANAC46 <---------ICU4<---------AHL20(1)       ------------>CBF    --------->AHL20(2)  <--  --------->RAP2.6(2) <-----------GT1           <---------At4g35610<---------RAP2.6(2) <---------ANAC55(2)   ttagccgtcacaaaatattaaaaattacgctttattatattaaggccttgggctcactaatccaatattacggcccataaataaaaatcacatgtctacg  3417900                                                      <---------ALFIN1                                               <-----------GT1                              <------ZmHOX2a(1) --->ANAC55(2)                              --------->YAB1                                 ---------- --->O2                  ----------->HVH21 <---------YAB1                          --------->AtMYB61 ----ANAC58 <---------DAG2               --------->YAB1    *TSS  ------->MYC3      --------->ZAT6 ----ANAC58 <----------DOF2         --------->YAB1 --------->ANAC46  <-------TEIL --------->MYB46(3) ---------HVH21 <-----------GT1  ----------->GT1  ------->GAMYB  <-------MYC3   ------>NtERF2   tgtcaaaacagtcacttttctctatacatgacaggcagtgatattatcataaccctccacttatacacatgttcatttttggcgaccactagaaggagaa  3418000                                                                ================================HOX2a_HOX2a                                                                <------ZmHOX2a(1)                                                          <----------DOF2                                                         <---------ANAC46                                                        <------NtERF2                                   <---------ANAC58    ------>NtERF2                                   <---------ANAC58   --------->RAP2.6(2)                 <----------                               <---------ZAT14        <---------ATERF1(2)                ============ <---------ARR11(3)           <---------ANAC46        <---------RAP2.6(2)                <------ZmHOX2a(2) <---------ARR14(2)        <---------MYB52(1)         --------->ATERF1(2)               --------->ARR14(2) --------->ARR14(2)     <-------TEIL                 --------->RAP2.6(3)                <---------ARR14(2) --------->ARR11(3)   <---------ARR14(2)----------->GT1<---------RAP2.6(3)             <------ZmHOX2a(1) ->GT1      <<<<<<<<<<<<<<<<<LFY   <---------ANAC46 --------->ZAT2                   <---------TOE2(3)   acaaatcttcattccaacaatggcgattcgttgtgtagcgagtagaaaaaccctagccggcttgaaggagacatcatcgaggctattgaggatcagaggg  3418100                                 <---------ICU4             <---------ZAT14                             <---------YAB1            --------->ICU4                         <---------ANAC58            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   --------->ARR11(3)               ----------------->AGL1                   <-----------ARR10                <-----------------AGL3    --------->YAB1                   --------->ARR14(2)             --------->ANAC46           <-------TEIL                   <---------ARR11(3)            --------->DEAR3(1)        <---------ARR14(2)                 ------>ZmHOX2a(1)              --------->ATERF1(1)   --------->AtLEC2        <-----------GT1  <---------ANAC58       --------->DEAR3(2) <------ZmHOX2a(2)      --------->YAB1     <----------DOF2 ------>ZmHOX2a(2)        <---------ARR14(2)  --------->ARR11(3)    --------->ANAC58 -RAV1(2) --------->ANAC46------>ZmHOX2a(1)   --------->ARR14(2)  <---------ARR11(3)    --------->ANAC58 =======================HOX2a_HOX2a   <---------ANAC46 <---------MYB52(1)  --------->ARR14(2)   attcagacttttacgcttcctgatcttccttacgattatggcgcattggaaccggccattagtggagagatcatgcagattcatcaccagaagcatcacc  3418200                    <--------ATHB1                    <---------ICU4                                       <---------MYB46(3)                    ---------->DOF2                                   <-----------RAV1(1)                   <---------ATHB51                              >>>>>>>>>>>>>>>>>LFY                   --------->ICU4                              <---------ANAC58                   <---------ATHB12                            <---------ANAC58                 --------->YAB1                               <---------HSFC1(2)                <---------YAB1                                --------->HSFC1(2)              <-----------GT1               --------->ZAT2    --------->HSFB2a(1)              --------->YAB1                <---------ZAT2    <---------HSFB2a(1)           <---------ICU4         --------->At4g35610      --------->GLK1(1)       <-----------GT1         <---------At4g35610         <---------At4g35610      <<<<<<<<<MYB98--------->YAB1--------->ZAT2         <---------------------WRI1    <---------ZAT18   aggcttatgttactaattacaataatgctcttgagcagcttgatcaagctgtgaacaagggagatgcttccactgttgttaagttgcagagcgccatcaa  3418300  Previous    Next  AGI:  At3g10915.1    Description:  reticulon family protein. similar to reticulon family protein (RTNLB12) [Arabidopsis thaliana] (TAIR:AT3G54120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41507.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 3415980    to: 3417793    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10920.1    Description:  MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); manganese superoxide dismutase. Identical to Superoxide dismutase [Mn], mitochondrial precursor (SODA) [Arabidopsis Thaliana] (GB:O81235;GB:Q9SRK3); similar to superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative [Arabidopsis thaliana] (TAIR:AT3G56350.1); similar to superoxide dismutase [Raphanus sativus] (GB:AAL07333.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) Range:  from: 3417959    to: 3419858    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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