Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <-------TEIL  ==============HOX2a_HOX2a                 --------->ARR14(1)                 --------->CCA1(2)                <---------GLK1(2)                <---------ARR14(2)                --------->ARR11(1)             --------->ANAC58                --------->ARR14(2)         --------->ANAC58              <---------YAB1    <------ZmHOX2a(2)           ===================================HOX2a_HOX2a      XXXXXXXXXXXXXXXXXXXX>MIR832-5P   <------ZmHOX2a(1)            --------->ANAC58     --------->TOE1(2)    =============HOX2a_HOX2a----------->RAV1(1) <----------ID1   --------->ARR14(2)     ------>ZmHOX2a(1)--------->ANAC58         --------->ANAC58            -----   <---------ARR14(2) --------->ARR14(2) --------->MYB52(1)       ---------->DOF2      ---------->DOF2 ----------------AGL3 <---------ARR14(2)<---------ARR14(2) ---------->DOF2---------->DOF2       ----- ----->ZAT6======================HOX2a_HOX2a   --------->ANAC58<---------------------WRI1    -------- -----GT1  <------ZmHOX2a(2)   --------->ARR14(2)<----------ID1<-----------------------TaNAC69(2)   ctctaaatctgggatcaagattcgaatcctcacgatccataggaaacggaagcaacaaaaacaaagccgaaagaaacaaagcgactgataaaagcagcac  3384100                                                                                                <----                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                           --------->ATERF1(1)                                                                                           --------->RAP2.3(1)                                                                                           <------NtERF2                                                                                          --------->LBD16                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                                                                          <---------RAP2.3(1)                                                                                         --------->RAP2.3(2)                                                                                         <---------ATERF1(2)                                                                                         --------->DEAR3(1)                                                                                         <---------DEAR3(1)                                                                                         --------->ATERF1(2)                                                                                        --------->RAP2.3(1)                                                                                        --------->ERF1                                                                                        <---------LBD16                                                                                        --------->RAP2.6(1)                                                                                        <------NtERF2                                                                                        --------->DEAR4(2)                                                                                        --------->ORA47(2)                                                                                       <---------ATERF1(1)                                                                                       <---------RAP2.3(1)                                                                                      <---------ATERF1(2)                                                                                      --------->ATERF1(2)                                                                                      --------->RAP2.3(3)                                                                                      --------->RAP2.3(2)                                                                                      --------->DEAR3(1)                                                                                      <---------DEAR3(1)                                                                                     --------->ATERF1(1)                                                                                     --------->DEAR4(2)                                                                                     --------->ERF1                                                                                     --------->ORA47(2)                                                                                     --------->RAP2.3(1)                                                                               --------->HSFC1(2)----                                                                               --------->At4g35610                                                                               <---------At4g35610                                                                               <---------ZAT2  <-----                             <------ZmHOX2a(2)       --------->HSFB2a(1)       <---------HSFC1(2)----                      <---------ANAC58           --------->DEAR3(1)        <---------DEAR3(2) <------                      <---------ANAC58      <---------ALFIN1              --------->ATERF1(2)------>NtERF2                    ------->TEIL           --------->MYB46(3)             <---------ATERF1(2)--------               ------>MYB46(1)<-------TEIL--------->ANAC58               <---------LBD16--------->ATERF1(1)               ------>MYB83  =====================================HOX2a_HOX2a  <---------HSFB2a(1)               --------->MYB52(1)        ------->GAMYB               --------->ARR14(2)--------->ABI4(1)           ------->TEIL     --------->AGP1--------->ANAC58  <---------ALFIN1 <--------P------>NtERF2 ---->ANAC58 --------->MYB46(3)         <---------ALFIN1   ------>ZmHOX2a(1)<---------MYB52(1)<------NtERF2 ---->ANAC58--------->ANAC58<---------ARR11(3)  --------->ANAC46<-----------HVH21   <---------RAP2.3(1) ->At4g35610--------->ANAC58--------->ARR11(3)<---------ALFIN1 --------->DEAR3(1)   <---------ATERF1(1)   gaataaacatttgaacccaacgaagcttgagatccatttgcaacacccacaccgagcattcctcaccgtcgaatcgccggtagcttcgccgccggcgaca  3384200                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                  <--                                                                                              <------MYB46(1)                                                                                            <--------                                                                                         <---------DEAR3(1)                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                      ---------->CDC5                                                                                     ------>ZmHOX2a(1) -----LBD16                                                                         --------->TOE2(3) >DEAR3(1)                                                                        ------>MYB83<------MYB83 -ETT(2)                                                                       --------->ZAT2<------- -->HVH21                                                    <----------ID1   ------>NtERF2 <-------- ----->ANAC58                                <---------TOE1(3)   ---------->DOF2--------->AtMYB61---- ----ALFIN1                         --------->ANAC58 --------->ANAC58        <---------ALFIN1-------- ----->ANAC58         <-----------GT1        <---------TOE2(3)----------->RAV1(1) ------>MYB46(1)<--- ---REM1(2)     <---------TOE1(2)   --------->ANAC58 --------->ANAC46     --------->ANAC58  --------- --->RAV1(1)   ------>ZmHOX2a(1)  ---------->DOF2    --------->ANAC58     --------->ANAC58<---------MYB46(3)   cggagactcacatcatcctcggttttacccattgacaaaagcaaactaaggtttcaagacatagcaacaaagagaaaccccaccttcctcagcggtgggt  3384300      --------->TOE2(3)     <---------ICU4     --------->ATHB12     <--------HAHB4     --------->YAB1    <---------ATHB12    --------->ICU4    <---------YAB1 --------->MYB46(3) -------->ANAC58 -------->ANAC46 -------->ANAC58                                                    --------->ARR14(2) -------ALFIN1             ---------->DOF2                          <---------ARR14(2) -MYB55(1)         --------->At4g35610                              <---------GLK1(2) --MYB46(3)        <---------ZAT2                                  ------>MYB46(1) -ANAC46           <---------At4g35610                      --------->At4g35610 ----->SPL7        --------->ZAT2         --------------->AGL15    ------>MYB83 ->MYB55(2)      --------->ANAC46        ----------------->AGL1  <---------MYB59 ----TEIL      <---------ALFIN1          ----------------->AGL2-------->P >ALFIN1  --------->At4g35610          <-----------GT1      <---------At4g35610            <---------   acacccatcattagcttccacagctcaacaaaagccctaattcaccagattgagaacgtgatagctaccaaattcgcagaaaatgaagaaatttcacctt  3384400                                        ------>ZmHOX2a(1)                             --------->ANAC46                                       <---------ANAC58                               <----------ID1                                 --------->AHL20(2)        --------->YAB1             --------->ANAC58                                 <---------AHL20(2)     <----------DOF2           ---------->DOF2                               <----------DOF2         <---------ANAC58     --------->ANAC46                          <-----------GT1    --------->ANAC46    <---------AHL20(2)   --------->ANAC58                   <---------TOE2(3)   <---------ANAC58<---------ANAC46     --------->ANAC58 --GT1             xxxxxxxxxxxxxxxx>smallRNA(i)        <---------ANAC58     --------->ANAC58   cgaatatttgaaatcggaatcgaggtttttgctctttaattccttacccaaaacatggctttgatatttaaaacacacacacaaaaaaacgcaaaacgaa  3384500                                                               <---------------AtSPL8               <-----------GT1                      --------->AHL20(2)              <-----------GT1                       <-----------TBP              *TSS                                 <---------AHL20(1)               ---------->DOF2     ----------->GT1                               --------->AHL20(1)         --------->YAB1     <---------ANAC46                             --------------->AGL15     --------->AHL20(2)<------MYB83   --------->ZAT14             --------->YAB1     <---------------AGL15    --------->YAB1 <---------ARR14(2)   <---------ZAT14            <---------YAB1  --------->AHL20(2)          --------->AHL20(2)  <------MYB46(1)   --------->ZAT18        <---------GLK1(2)   <---------AHL20(2)        --------->YAB1    --------->ARR14(2)   gagagtgaagtgaatttttccgatttcagattataagaatgttttttttttaatatatatagaaaatggcacaaaaataaaaataagaaagggatttggt  3384600                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                                <----                                                                                              -------                                                                                              <------                                  --------->AHL20(2)                                    --------->YAB1                                  <---------AHL20(2)                              --------->ARR11(3)<                                 <---------AHL20(2)                             <---------TOE2(3)----                            ------->GAMYB                                   --------->TOE1(3)<-------                          <---------At4g35610                 --------->ZAT14------>ZmHOX2a(1)-------                          --------->At4g35610    <-----------GT1     --------->YAB1     --------->TOE2(3)                      --------->ANAC46<---------ICU4   --------->TOE2(3)    --------->TOE2(3)--------                  <-----------GT1--------->AHL20(2) <----------DOF2 <---------YAB1<---------ARR11(3)-   tttttgtaagggttttctatttacgctcaactgaatttaattttcacatatatactttcttaacttcactatcattttccttaagatttatcttaattat  3384700                                            <---------MYB46(3)                                            <------MYB83                                            <------MYB46(1)                                           <---------MYB46(3)                                           --------->MYB111(1) --------YAB1                              --------->MYB111(2) ------>ARR11(3)                           --------->MYB55(2)     ----------->RAV1(1) -------ARR11(3)                          <--------P             --------->MYB46(3)      <-----------TGA1 -----YAB1                              --------->ATHB12         ------->GAMYB <---------HSFB2a(2) -->YAB1                               <---------TOE2(3)         ----------->HVH21       <-----------HVH21 ---ICU4                               <---------YAB1            --------->DEAR4(1)   --------->MYB52(1) ---------ICU4                     --------->AHL20(2)            --------->At1g77200  <---------At5g28300 ----->YAB1                 <----------DOF2<---------AtMYB61     --------->DEAR3(1) <---------MYB55(2) --ATHB51     <-----------GT1     <---------AHL20(2)             --------->DREB2C(2)--------->MYB46(3) ->HAHB4   <---------AHL20(2) --------->AHL20(2)                --------->DEAR3(2)  <---------MYB52(2) ->ICU4   --------->AHL20(2)--------->TOE2(3)       <---------ANAC46         --------->ZAT18 -------->ATHB12            --------->TOE1(3) ---------->ID1  --------->AtMYB61--------->HSFB2a(2) --   gatcattgcaaattttatacaccttggaaactttaaataatatggttggtcgttttgggtaagaccaccgacagaagagtgctcgaactaccgtcaccga  3384800                                                --------->AHL20(2)                                                <---------AHL20(1)                                        --------->YAB1                                     <---------ICU4                     <---------AHL20(1)                                     --------->YAB1          <-------TEIL             --------->YAB1                                    --------->ICU4          <--------P  <---------ARR11(3)                                --------->AHL20(2)       <---------TOE2(3)         --------->TOE2(3) --------->GT1                <---------TOE2(3) --------->AHL20(1)      --------->AHL20(1) --------->ZAT6   atggataaattcaagaaaattatcaaatttttaagaaaataatgagaaaatataatatcaaggttgataaacaatatttttcatacattaataagactac  3384900                                  ----------->RAV1(1)                               --------->ANAC58                        ----------->GT1                    --------->AHL20(1)                          <---------YAB1       <-------MYC3                    <---------AHL20(1)                        --------->YAB1         <-------MYC2                    <---------AHL20(2)                       <---------YAB1          ------->MYC2                    --------->AHL20(2)                      --------->ARR11(3)       ------->MYC3                    --------->ARR11(3)     <---------YAB1   <---------ARR11(3)     ------->TEIL             --------->ANAC58  --------->ANAC46        --------->AHL20(2)       --------->AtLEC2             --------->ANAC58  --------->ANAC58        --------->AHL20(1) <---------ANAC55(2)             --------->ANAC46 --------->DAG2           <---------AHL20(2)--------------->AtSPL8             --------->AtLEC2---------->DOF2--------->YAB1 --------->RVE1(1) <-------TEIL         ---    <----------DOF2 <---------ARR11(3)  <---------AHL20(2) --------->CCA1(1) ------->TEIL <---------WOX13(1)   aaaacccttttgtacatgccaatatattgaaaaaagcaacattttatcatggaaaaataaaatatcatcatatactacgtacatgcacatggattgattc  3385000  Previous    Next  AGI:  At3g10810.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G56590.2); similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G56590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18261.1) Range:  from: 3381853    to: 3384514    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10815.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to RHC1A (RING-H2 finger C1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G40830.1); similar to RHC1A (RING-H2 finger C1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G40830.2); similar to RHC1A (RING-H2 finger C1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G40830.3); similar to unknown [Populus trichocarpa] (GB:ABK95425.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 3384812    to: 3386332    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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