Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->YAB1     <---------ICU4    --------->ICU4 ------>YAB1                                                                        <----------DOF2 < >ZmHOX2a(1)                     --------->MYB46(3)      <-------TEIL            ---------->ID1    --   tgagaaataatcacgtccaatttccttcgaagttaaccacgagaaattagctatttatgttcgttcttcaataccatatttttgttctttcgaattgata  3366000                                   <----------DOF2               --------->ANAC58             -------                              <-----------GT1        --------->TOE2(3) <-----------GT1  <---------ARR14(2)     <-----------GT1     <---------TOE2(3)           <---------MYB59--------->ARR14(2)  --------->ARR14(2) ---------RVE1(1)        <---------TOE1(3)     --------->YAB1    --------->ANAC58       --------->GLK1(2) ------->ARR11(3)     <---------MYB52(1)  ----------->GT1   <---------PCF5    --------->YAB1  <------   cgatatttaacaaaattttgttctgttaagtttatctctttgaaaggtatcaaaaccttactggaccacgaattcaccattcagaaaacaaatctggatt  3366100                                                                                              -------                                                                                        --------->HSFB2a(2)                                                                                        <---------HSFB2a(2)                                                                                       ------>ZmHOX2a(2)                                                --------->ANAC58                      <------ZmHOX2a(2)                                                --------->ANAC58                      --------->CCA1(2)                                                --------->ANAC55(2)                  <---------ARR11(3)                                                --------->ANAC55(1)                  <---------ARR14(3)                                         <---------ICU4                              --------->ARR11(3)                                         --------->YAB1                              --------->ARR14(2)                                        --------->ICU4      <----------DOF2          <---------ARR14(2)                                      --------->YAB1--------->At4g35610              --------->AGP1           ---------->DOF2         <<<<<<<ZML2  --------->ANAC46<---------At4g35610  <---------AGP1 -->ARR14(2)                    --------->HSFB2a(2) <---------At4g35610              --------->ARR14(3) ---ARR14(2)                    <---------HSFB2a(2)------->TEIL --------->At4g35610----------->ARR10   tgcaaaaaaaaaaaaaagaaggaagtctgcaagtctagaacaataatcacacgcatctgtgactttagatgcccttgttcagagcaagatctggaataag  3366200                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)          ---------->DOF2                           <---------ARR11(3)    --------->ANAC58                           <---------AGP1        --------->ANAC58                           --------->ARR11(3)    --------->ANAC46                           <---------ARR14(2)--------->CCA1(2)                           --------->ARR14(2)<------ZmHOX2a(2)                          <------ZmHOX2a(1) --------->AGP1                          ==========================HOX2a_HOX2a                  --------->ZAT14           <---------ARR11(3)         ----------->GT1    --------->YAB1                  <---------ZAT14          --------->GLK1(1)<---------GLK1(1)          ------->GAMYB         <---------MYB52(1)--------->GLK1(2)<---------ARR14(2)   <---------At4g35610  --------->MYB46(3) -->YAB1 --------->ARR14(2)<-----------ARR10--------->ARR14(2)   --------->At4g35610  <---------MYB52(2)   aaaaatcaacagttatgctctgtagtgaggatctagttttgagcgagatccaagaaaaaaagaaatcagcagtcagtaaaatcaaacaacaaacatgaaa  3366300                                                                                   <------NtERF2                                                                                   --------->TGA2(2)                                                           --------------->AGL15  <-----------TGA1                                                           <---------------AGL15  <-----------HVH21                                                          <-----------------AG   <---------ANAC58                                                          <-----------------AGL2 <---------ANAC58                                                          <-----------------AGL3 <---------ANAC46                                                          <-----------------AGL1 <---------bZIP60(1)                                                          --------->ETT(2)       --------->TGA2(1)                                                          ===========================================                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <x                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xx                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)            <xx                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxx                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)           <xxx                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <xxx                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxx                                                      <XXXXXXXXXXXXXXXXXXXMIR158A<---------TGA2(1)<xx                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxx                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxx                                                      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxx                                                      <xxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxx                                                      <XXXXXXXXXXXXXXXXXXXMIR158B--------->bZIP60(1)<                                                      <xxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxx                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxx                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxx                                                      <xxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxx                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxx                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxx                                                     <----------DOF2           <xxxxxxxxxxxxxxxxsmallRNA(i)                                       <---------ICU4<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <xxxxx                                    --------->bZIP60(1)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)        ------                                 --------->ANAC58    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        ------                                 --------->bZIP60(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxx                                 --------->ANAC58   <---------ANAC58           <xxxxxxxxxxxxxxxxsmallRNA(s)                          --------->ARR11(3)        <---------ANAC58          <xxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->At4g35610 <---------bZIP60(1)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)   <----------DOF2            <---------TOE1(2)    --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------DAG2     --------->ANAC46     <-----------ARR10 --------->ANAC46                <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->ANAC58     <---------ARR11(3)--------->ANAC58               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->ANAC58    <---------GLK1(2)  --------->ANAC58         ---------->DOF2      ===========   catttacacgctcgtagcatctcaacaaaatctccacgacatcatcacggtattgctttgtctacatttgggaaagagcaatggcgtcatcactttttcc  3366400                           <---------O2                           <---------TGA1a                           <---------bZIP60(2)                           <---------ANAC55(1)                           <---------ANAC55(2)                           <---------ANAC46                           <---------ANAC58                           --------->O2                           <---------ANAC58            =========================bZIP_DOF            ---------->DOF2>>>>>>>>>>HY5         ---------->DOF2   --------->ANAC55(2)         ============================bZIP_DOF     --------->ETT(2)      ==================================================bZIP_DOF     <---------ETT(2)     ----------->STF1 ============MADS_MADS   <---------TGA2(2) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <------- xxxxxxxxxxxxxxxxsmallRNA(si3)              --------->At4g35610                              <------- xxxxxxxxxxxxxxxxsmallRNA(le3)     *TSS     --------->ZAT14                               <---------- xxxxxxxxxxxxxxxxsmallRNA(s2)   <-----------GT1                                       <---------ANAC46 ----------->AG         ----------->TGA1    <---------At4g35610                   <---------ANAC58 ----------->AGL1       ----------->HVH21   <---------ZAT14                   --------->ANAC58 xxxxxxxxxxxxxxxsmallRNA(le3)--------->ALFIN1                                 --------->ANAC58 ====================================bZIP_DOF                     ---------->DOF2 <---------ANAC58  <   aaaattgtagacaaagaagcacagagatgacgtgttactcttcttctgcagtcgctagccctctaatctaaagtctctgcaagtacttgtgtttacttta  3366500                                                          --------->At4g35610                                                          ------>NtERF2                                                          <---------At4g35610                                                         --------->RAP2.6(2)                                                         --------->DEAR3(1)                                                         --------->RAP2.3(2)                                                        --------->RRTF1(1)                                                        --------->RAP2.3(1)                                                        <------NtERF2                                                        --------->ATERF1(1)                                                       <---------DEAR4(2)                                                       ------>NtERF2                                                       <---------ATERF1(1)                                                       <---------RAP2.3(1)                       <---                                                      --------->RAP2.6(2)                       -----                                                      --------->ANAC46                          -----                                                      <---------DEAR3(1)                        -----    <---------ANAC58                                  --------->DEAR3(1)                     --------    <---------ANAC58                                  --------->RAP2.3(2)           --------->LBD16 --DAG2                                              --------->RAP2.3(1)           --------->ANAC58 ---DOF2                --------->HSFB2a(2)      ---------->DOF2                   --------->LBD16 -GT1                   <---------HSFB2a(2) ---------->DOF2  ---------->DOF2       --------->ANAC46 ------ZmHOX2a(1) ------------>CBF      --------->GLK1(2)--------->RRTF1(3)        --------->ANAC58 <   taggatgcttatctagggtatacaatctagaaaccctagaagaatctaaagtaaagccgccgctaaaggaagacagagacaatacccgaaatagagtgtt  3366600   <---------ATHB12  ------>MYB83  ------>MYB46(1) ------WRKY18(1) ---->WRKY38(1)                                                        --------->ARR14(2) ---->WRKY12                      >>>>>>>>>>>>>>>>>LFY                 <---------ARR14(2) ---->WRKY45                  ---------->DOF2                       --------->YAB1 ->ALFIN1------->TEIL  ----------->GT1                    <---------DAG2 ---------MYB59    <---------ALFIN1                       <----------DOF2                    --------   gaccaaacatggacttaagcccaacttgtttaaaaagcccaatgtacaatgacacaattcctttttctaaacatattcgagtttcaacttgttttaaaag  3366700                                                                                                   <-                                                                                                 ----                                                                                              ------>ZmHOX2a(2)                                                                                              =======                                                                                             ========                                                                                             <------ZmHOX2a(2)                                                      <---------ANAC55(2)                   <--------                                                      --------->ANAC58                      ---------                                                      --------->ANAC46                      ---------                          --------->ANAC46            --------->ANAC58                      <--------                          --------->ANAC58            --------->ANAC55(2)                   ---------                          <---------ANAC55(2)   <---------CCA1(2)                           <--------    ------------>CBF      --------->ANAC58--------->ANAC58             <----------DOF2      --------- -->DOF2 --------->YAB1  <---------LBD16  --------->ANAC58  --------->YAB1 <---------YAB1   <--------   gcctagcccaatactaacttatcttgctacggaagaatgttaactcgcctctatctacgtaatcaaactagggctttcttattctgacgaacaagatctt  3366800                        --------->MYB52(1) <------ZmHOX2a(1)    ------>ZmHOX2a(2) ===========================HOX2a_HOX2a ============================HOX2a_HOX2a --------TOE2(3)     <------ZmHOX2a(2) ------>DOF2        <---------ARR14(2)                                 ----------->TGA1 =======HOX2a_HOX2a --------->AGP1                                     ----------->HVH21 =======HOX2a_HOX2a --------->ARR11(3)                               ----------->RAV1(2) -ARR14(3)          <---------ARR11(3)                               <---------ANAC58 >ARR14(3)          --------->ARR14(2)            ----------->HVH21  <---------ANAC58    <---------ARR14(2) >ARR14(2)         --------->GLK1(1)        <---------At4g35610      <---------AtLEC2    --------->ARR14(2) -ARR11(3)         <---------GLK1(1)        --------->At4g35610      ========================RAV >ARR11(3)    --------->At4g35610           <---------ZAT2       <---------ANAC58     <---------ANAC46 -AGP1  <---------At4g35610                 --------->ZAT2       <---------ANAC58 <-------GAMYB >AGP1  --------->At4g35610            <-----------GT1    <------ZmHOX2a(2)      <-----------RAV1(1) -ARR14(2) --------->At4g35610       <---------AHL20(2) <------ZmHOX2a(1)    <---------GLK1(1)   aaaggatgtcatcagaagcggagatctatcggaaaaaatttaaacgagctgtctgacaggatcagtgccttgcctgacgatttctgttgcatatactgtg  3366900  Previous    Next  AGI:  At3g10745.1    Description:  MIR158A; miRNA Range:  from: 3366336    to: 3366435    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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