Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                                                                               ------                                                               <---------ANAC58                <-----                                                               <---------ANAC58                ------                                                              ------>NtERF2                  --------                                                    <-----------HVH21                        <-------                                                    <---------SPL7    <-------GAMYB         ---------                                                  --------->LBD16    --------->MYB55(2)    --------->At5g28300                                                 <---------ANAC58    <---------MYB46(3)  <------NtERF2  --------->MYB46(3)                  <---------LBD16 --------->SPL7<---------AtMYB61    <---------DEAR3(1)  <---------MYB55(2)                  ----------->RAV1(2) <---------DEAR3(1)         <-----------HVH21 ----->TOE1(3)                --------->YAB1     <---------ANAC58--------->ALFIN1   --------->O2 ---- --ARR14(2)                   --------->TOE2(3) <---------LBD16<---------ANAC46     --------->ANAC46 ->ARR14(2)            <---------CCA1(2)--------->LBD16----------->HVH21           <------NtERF2<----   cctaaccactgtcttccatttccctctatctatcttattcccctgagacttccgcgtccgacgctgcgtggtggttgtattagtccccgtcgcggtggat  3360300                             <------MYB83                         <---------ANAC46                                           <---------At4g35610                     ------>MYB83                                                   --------->At4g35610                     ------>MYB46(1)                                 <------ZmHOX2a(2)      <---------ANAC58 <-----------HVH21                            --------->AGP1  <---------ZAT2      <---------ANAC58--------->ANAC46        <---------ATERF1(2)   --------->ARR11(3)  <---------GLK1(1)--------->TOE1(2)   ------>ZmHOX2a(2)            <---------GLK1(2)  --------->GLK1(1)<---------MYB59    --------->GLK1(1)        --------->GLK1(2)    --------->ZAT2 ---->ZmHOX2a(1) <-----------ARR10    <---------GLK1(1)   <---------ANAC46      --------->SPL7 --------YAB1    --------->ARR14(2)  <---------AGP1<------NtERF2    --------->ARR14(2) --->ARR14(2)    ------->TEIL<------MYB46(1)  --------->ATERF1(2)   <---------ARR14(2) ----ARR14(2)    <---------ARR14(2)  <---------ARR11(3)  <------NtERF2        <---------SPL7 --->ARR11(3)<---------At4g35610     --------->ARR11(3)---------->CDC5------>ZmHOX2a(2) ->ABI4(2)   --------->At4g35610    <---------CCA1(2)  <---------DEAR3(1)    <---------ANAC58 --MYB46(3)<-----------GT1  <---------TOE1(2) --------->DEAR3(1)    <---------ARR11(3) --------->At4g35610 >ALFIN1 <-----------HVH21<---------SPL7  ----------->HVH21------>NtERF2     <---------ANAC58 -->ZmHOX2a(2) --------->LBD16 --------->ALFIN1 <---------MYB52(1) XXXXXXXXXXXXXXXXXXXX>MIR837-5P --ZmHOX2a(2)<---------LBD16<---------TOE2(2)<---------LBD16<------NtERF2   --------------->AtSPL3   cctgatttccttgtcaccggacctacgtcgtaggtgttggatctctcaccggcagcctcggcgcgaatcagatccttgttcgtaccagcagacgactctc  3360400                                                                             <---------DAG2                              <<<<<<<<<<E2Fb                                 <----------DOF2                              <------NtERF2                                <------NtERF2                             --------->LBD16                               ------>NtERF2                           <---------LBD16                              --------->ATERF1(1)                           <------NtERF2                                <------NtERF2                    <-------TEIL                                        <---------ATERF1(1)                   --------->ARR14(1)                                  <---------ATERF1(1)                   --------->CCA1(2)                                   ------>NtERF2                <                  --------->ARR11(1)                                  <---------ANAC58              -                  --------->ARR14(2)                                  <---------ANAC58            ---                ----------->ARR10--------->GLK1(1)                    --------->DEAR3(1)      -------            <---------ANAC58 ------>NtERF2                         --------->DEAR3(1)     <------ZmHOX2a(1)            <---------ANAC58<---------ANAC46                      --------->DEAR3(2)    <---------TOE1(2)     <---------RAP2.6(3) ---------->CDC5                         --------->MYB52(1)    ------>ZmHOX2a(1)     ------>NtERF2<---------GLK1(2)                       --------->LBD16--------->SPL7--------->HSFB2a(2)    --------->RAP2.6(2)  <---------DEAR3(1)   <---------GLK1(1) <---------ARR14(2)     <---------HSFB2a(2)   <---------LBD16<---------ARR14(2)--------->YAB1      <---------LBD16<---------SPL7 --------->TOE1(2)   caattgccgcattggcatgagattcgctcggcgggaaatcaaaattagatttcttctcaccggagagaaccggcgtccgccttattgtcctaggactagc  3360500                   ----------->RAV1(1)                   <---------RAP2.6(3)                   ------>NtERF2                   <---------DDF1                  <---------ETT(1)                  --------->DREB2C(2)                  --------->DEAR3(1)                  --------->At1g77200                  --------->DEAR4(1)                 <------NtERF2                 --------->ORA47(2)                ------>NtERF2                <---------ATERF1(1)             <---------DOF5.7(2)            ----------->HVH21            --------->WRKY12           <---------MYB52(1)           --------->DOF5.7(2)          <-------GAMYB    ------>ZmHOX2a(2)   ----------->HVH21     --------->ARR11(3)  <---------WOX13(1)     <---------ARR11(3)                                     --------->TOE1(3) ---------MYB46(3)--------->RAP2.3(3)                                           --------->TOE2(3) -------->ATHB12<---------RAP2.3(1)                                    --------->AHL20(2)    <------- ------>At5g28300--------->RAP2.3(1)                            ------>ZmHOX2a(1)            -------- -->MYB52(1)--------->WRKY38(1)                --------->ARR14(2)  <---------YAB1     <---------ICU4   ggtgattgacaccgttgacgccgacatgatcttcaattttgaactacagaattcgaaatgctcttccttatgaataaataaaccctaattttgactacag  3360600                                                                                       *TSS                                                                                    <---------TOE1(2)                                                  --------->ZAT6                   <---------ANAC46                                                 <------ZmHOX2a(2)               <---------ANAC58                                         <------ZmHOX2a(1)                       <---------ANAC58                                  --------->AHL20(2)                     --------->ARR14(2)      --------->CCA1(2)       ----------->GT1   <---------ARR11(3)       <---------ARR14(2)     <-----------------------TaNAC69(2)  ===============HOX2a_HOX2a      --------->GLK1(2) --ZAT14                    <------ZmHOX2a(1)   --------->ARR11(3)       --------->ARR11(3)    <----- ->ZAT14                    ============================HOX2a_HOX2a      <---------ARR11(3)    ------   agagagagatttgaaatggaagaagagtgaggaagtttatataggagagagatcactacaaaattcaattttgaaaatctgaatcgtgtgttcttcagtt  3360700                                                                                --------->AHL20(1)                                                                                <---------AHL20(2)                                                                       --------->YAB1                                                                       <---------ICU4                                                                      --------->ICU4                                                                      <---------ATHB51                                                                      <---------ATHB12                                                                   <---------------AGL15                                                                   --------------->AGL15                                                                  <-----------------AGL3                                                                  ----------------->AGL2       <---------AHL20(2)                       <---------YAB1    ------------>CBF               <---      <---------YAB1                          --------->YAB1      ----------------->AGL1      <------      <------------------------ANAC81         <---------ICU4      ----------------->AGL3     <-------     --------->AHL20(2)                      --------->ICU4       <-----------------AGL1   --------->ZAT2   --------->ICU4                 <-----------GT1            ---------->DOF2    --------->AHL20(2)<-- ----ARR14(2)                  <---------AHL20(2)--------->ATHB12 <-----------------AGL2 --------->ATERF1(1) --->ARR14(2)            ------>ZmHOX2a(1)<-------TEIL  <----------DOF2<--------ATHB1    <---------ALFIN1   tcgccatttttatttgttttgatgctcctccatttttttcaaaattcattatgatgggcttttaaaagcccaataatggaaataaaatggcccagcccac  3360800                                                                                --------->CCA1(2)        <-----------TGA1                                          <---------ARR11(3)       --------->bZIP60(2)                       <---------YAB1   --------->ARR11(3)               --       --------->O2                            <---------ICU4    <---------RVE1(1)               ----  --------->ANAC58                            <---------YAB1     <---------GLK1(1)            <------  --------->ANAC58                          --------->REM1(1)    <---------CCA1(1)           --------  --------->ANAC46                       <---------ANAC58        --------->GLK1(1)         <---------YAB1 -------DOF2          <---------YAB1     <---------ANAC58        --------->RVE1(1)       --------->ATHB12 ---ALFIN1  <---------At4g35610       <---------MYB52(1)         --------->CCA1(1)       <---------ICU4 --ZAT18<-----------HVH21           <-----------RAV1(1)         <---------ARR11(3)      <---------YAB1 ---------HVH21  <----------DOF2 --------->GLK1(2)<---------ICU4--------->ARR11(3)      --------->ICU4   tttcacgcctcgtcatcttcttttatgctaagaagaaactgttgcttcatcattcttgcatatcaagatatctagagtcgagataagctcatgattaaag  3360900       <---------AHL20(2)                  <---------ANAC55(2)      --------->AHL20(1)                   ----------->GT1      --------->AHL20(2)                   --------->ANAC58      <---------AHL20(1) --------->AHL20(2)--------->ANAC55(2)      <---------AHL20(2)<---------YAB1     --------->ANAC58 --------->AHL20(2)   --------->YAB1      --------->SPL7 --------->GT1        <--------HAHB4      <-------TEIL ------>DOF2         <---------YAB1   <---------------AtSPL8 ---TOE2(3)  <---------At4g35610 --------->ANAC46                                  ---------->DOF2 -->DOF2   <-----------GT1<---------AHL20(2)                   ----------->GT1 --------->MYB46(3)   aaagtaaatttattcaccagactattattatatatacacaagggtacgttataagcatttatggaatgtaattagatttgaaccacaaagagacttttga  3361000                                                                                               ------                                                                                              -------                                        --------->ALFIN1                                      <------                                   <<<<<<<<<<<<<<<<<LFY                                       <------                          <-----------GT1  <--------P                                  <----------DOF2               <---------ANAC58 --------->ZAT14                          <---------WOX13(1)  <-------               <---------ANAC58 <---------REM1(2)            >>>>>>>>>TBF1           <---------YAB1 ---------->DOF2   <---------YAB1  --------->ANAC46<---------YAB1--------->GLK1(2) <---------CCA1(2)   catgaaagttgatacttccttgtcattgtttctcttcacacagtggtagttttctgatgggaagaagaatcagagattggcattcttatctttgcagatt  3361100                                 <------NtERF2                                --------->LBD16         ------>ZmHOX2a(1)                               <---------ANAC58         --------->At4g35610                               <---------ANAC46      ------>ZmHOX2a(1)             ----------->GT1    --------->MYB46(3)         <---------ANAC58  <---------ARR14(2)     --------->ANAC58 --->GLK1(2)                  <---------LBD16    --------->ARR14(2)  <---------STY1(2) -->ARR14(2)                --------->ALFIN1<-----------HVH21   --------->ZAT6    --------->ALFIN1 ---ARR14(2)              <-----------RAV1(1)   <---------CCA1(2)    --------->STY1(2) ---GLK1(2)               --------->ALFIN1 ------->GAMYB<---------At4g35610<----------DOF2 --At4g35610       ---------->DOF2      --------->MYB52(1) ------>NtERF2--------->ANAC58          ---   ccttcaacaaatcgaatgaagaaaaggaatgtggcgggagaacaacggtcatatcctcctctgccaactctagcaagctttcatgtggtacaacctgcaa  3361200  Previous    Next  AGI:  At3g10730.1    Description:  sad1/unc-84-like 2 family protein. similar to sad1/unc-84 protein-related [Arabidopsis thaliana] (TAIR:AT5G04990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66036.1); contains InterPro domain Sad1/UNC-like, C-terminal (InterPro:IPR012919) Range:  from: 3358333    to: 3360687    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10740.1    Description:  ASD1 (ALPHA-L-ARABINOFURANOSIDASE); hydrolase, acting on glycosyl bonds. similar to glycosyl hydrolase family protein 51 [Arabidopsis thaliana] (TAIR:AT5G26120.1); similar to alpha-Arabinosidase1 [Pyrus communis] (GB:BAF42035.1); similar to alpha-L-arabinofuranosidase [Prunus persica] (GB:ABF22680.3); similar to alpha-L-arabinofuranosidase [Malus x domestica] (GB:AAP97437.1); contains InterPro domain Carbohydrate-binding, CenC-like (InterPro:IPR003305); contains InterPro domain Galactose-binding like (InterPro:IPR008979); contains InterPro domain Alpha-L-arabinofuranosidase, C-terminal; (InterPro:IPR010720) Range:  from: 3360893    to: 3365419    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version