Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------   <---------GLK1(2)                --------->At4g35610                                       -------  <---------ZAT2             <----------DOF2                                                 <-------  <---------At4g35610<---------ARR14(2)                                                      <-------  --------->At4g35610--------->ARR14(2)                  <---------At4g35610                 <------- ------->HVH21    <-----------RAV1(2)      <----------DOF2                <----------DOF2  <---------MYB59 -----DOF2     <------ZmHOX2a(1)    <---------At4g35610  --------->At4g35610     <---------CCA1(2)  -   tgacagcttcttgagcaggaccaggtctggtctttttgagctgttctttgtatttgcagagctcaacatcaagcttctttatcttatcttctaccgaatc  3324600    <---------AHL20(2)  <----------DOF2                                     ------>ZmHOX2a(2) --->HSFB2a(1)                                      --------->ARR14(2) --->GLK1(1)                                        --------->ARR11(3) -->GLK1(2)                                         <---------ARR11(3) -->ARR14(2)                                        <---------AGP1 -----ARR10                                         <---------ARR14(2) ---ARR14(2)                                       <---------CCA1(2)      --------->ZAT2 ---ARR11(1)                            <-----------GT1                   --------->STY1(2) >TEIL                              <------------------------ANAC81       <---------STY1(2) --CCA1(2)   ----------->HVH21  --------->TOE2(3)<---------HSFB2a(2)      <---------ZAT2          <-- --GLK1(2) --------->At4g35610<-----------ARR10  --------->HSFB2a(2)  --------->STY1(2)   ------>MYB83 --ARR14(1)<---------At4g35610<---------ARR11(3)<---------LBD16       <---------STY1(2)   ------>MYB46(1) ----->ZmHOX2a(1)      --------->AHL20(2)   <<<<<<<<<TBF1   <---------MYB46(3) <---------ARR11(3)----   tcctcttttatttatctgaccaaaataaaacaaatcttagtttttcttcttctggatcttagtggttccaatagctagctagctcttaaaccttccttcc  3324700                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                              --------->YAB1                                                                             <---------ATHB12                                                                            ------>MYB46(1)      <---------TOE2(3)                    --------->WOX13(1)        ----------->RAV1(1)      <---------TOE1(3)                  --------->WRKY18(1)        --------->ANAC46      <---------YAB1                    <-----------HVH21         --------->AtMYB61 -------TOE1(2)                        --------->At4g35610--------->TOE1(3) ------>MYB83 -->ZmHOX2a(1)           <-------TEIL<-----------RAV1(2)  --------->TOE2(3)--------->WOX13(1)       -   tacggtttatggttctctaattcaaaattcatctaaatctcaggtcaatccgaagtgaaacctcaaaaccacaacaccaatcacgaattcttccaattga  3324800                      <------ZmHOX2a(1)                      ===========================HOX2a_HOX2a                    --------->MYB59                  --------->ICU4                --------->ATHB51                --------->ATHB12                --------->YAB1                <--------HAHB4                <---------ICU4                <--------ATHB1            ================================HOX2a_HOX2a      --------->DEAR3(1)                -------->HAHB4            ===================HOX2a_HOX2a                   --------->RAP2.3(3)               <---------ATHB51           <------ZmHOX2a(2)                               <------NtERF2               --------->ICU4            <-----------HVH21                                --------->RAP2.3(1)             --------->YAB1        <---------GLK1(1)  ------>ZmHOX2a(1)                  ------>NtERF2          ----------->GT1          --------->GLK1(1)  <---------YAB1                    --------->ANAC46         --------->DAG2        ==================HOX2a_HOX2a       --------->ATERF1(1)<---------ANAC58        ---------->DOF2        <------ZmHOX2a(1)     --------->TOE2(3)           <----------DOF2 ---------->GT1<---------YAB1 ----------->GT1--------->At4g35610   <------ZmHOX2a(1)  <---------ANAC58   aatcgaaaaaaaaagtaataattaggaacgagaggagaaacccgatcagaggcatcctgaatggacggaggaggctctgtgttctttttcgcgccgaaaa  3324900                                    --------->LBD16                                  --------->TOE1(2)                        --------->LBD16                             --------->GLK1(2)            <<<<<<<<<TBF1    --------->AHL20(2)                ---------->DOF2         --------->GLK1(1)   ------>ZmHOX2a(1)   <---------ANAC46                   <----------ID1        ---------->DOF2 <----   ctctcctcatcttcttcttctaactccgtgaataaatctgggaattttggatgatacagagagacaaaagaatttggaagaataaagagaaatcgagact  3325000                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                   --------->At4g35610                                                                                 <---------WRKY38(1)                                                                                 <---------WRKY12                                                                                 <---------WRKY45                                              <---------ANAC58                  --------->WRKY18(1)                                              --------->ANAC55(2)               <<<<<<<<<<WRKY43                                              <---------ANAC58                  <<<<<<<<<<WRKY38                         <------ZmHOX2a(1)  <---------AHL20(2)      <---------AHL20(2)       --------                         ==================================HOX2a_HOX2a          <<<<<<<<<<WRKY6   <--                     ---------->DOF2        <-----------GT1        --------->AHL20(2)  ---------->DOF2                    <---------AHL20(2)      *TSS       <------------CBF         <<<<<<<<<<WRKY11  <--                 --------->YAB1  --------->GLK1(2)  ------>ZmHOX2a(2)      <------------CBF  <------- ------DOF2     --------------->AGL15   <---------AHL20(2)  <------------CBF    <<<<<<<<<<WRKY26  <--   ttggagaagaaggcttctctaataaaaggattgagaatttgtttatttacttgatcgaattggattggatttaatggaattggtcaactaaaagaagctt  3325100                                                                                           --------->MYB46(3)                                                                                         <-----------GT1                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                                 <---------YAB1                                                                               --------->YAB1      <------ZmHOX2a(2)                                                        <--------HAHB4     --------->ARR11(3)                                                        --------->AHL20(2)     <---------ARR11(3)                                                        <---------ICU4 ->HSFC1(2)                          <------MYB46(1)                           --------->ATHB51 --HSFC1(2)                          <---------MYB46(3)                        -------->ATHB1 ->At4g35610                         <------MYB83                             <---------YAB1 ->HSFB2a(1)                        <---------AtMYB61                         <---------ATHB51 -------ANAC58           <---------AHL20(2)                                   <---------ATHB12 -------ANAC58          ------------>CBF                                      --------->ICU4 --HSFB2a(1) <------------CBF       --------->MYB59                         --------->WOX13(1) -------ANAC46       <---------AHL20(2)                               --------->ICU4   <---------AHL20(2)   ccttgaagatcatcgaattggatttattcaattttggtttggttcgatttgatttgggtaaaccaagttgtaatgaggcaattattaatttaaaccacta  3325200                                           --------->DAG2                     ----------->GT1      ---------->DOF2                ---------->DOF2                 ---------->DOF2      --------->REM1(1)              <----------ID1            ----------->GT1       --------->At4g35610              ---------->DOF2    <---------ARR14(2)        --------->MYB52(1)              <------ZmHOX2a(1)    --------->ARR14(2)      --------->MYB46(3)               <----------ID1       ---------->DOF2   aaaccagaactgaagagagaaaagagtttaacaaacagctacaataaagtgtgtttttttataaggacaaaaagaaaaagaagcgaaagacagaggcaca  3325300                                                                                            =========                                                                                            ------>ZmHOX2a(1)                                                                                          -----------                                                               <-----------GT1          --------->ARR11(3)                                                            --------->YAB1              <---------ARR11(3)                                      <-----------GT1    <----------DOF2                --------->ARR14(2)                                   <---------ICU4    --------->REM1(1)                  <---------ARR14(2)      <-----------GT1      <----------DOF2         ------>ZmHOX2a(1)               --------->LBD16   gagctatattactcttacagacaccagtactttctgaaaattacaaaactttcctacaacttttataaccctgaacaatttgacccccaaaatcctgact  3325400                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                                                            <--------                                                  <----------DOF2               --------->ANAC58 <---                                   --------->CCA1(2)<-----------GT1       --------->CCA1(2) ---------       ----------->HVH21        --------->ANAC46  <---------DAG2         <---------ARR14(2) --------- =========================HOX2a_HOX2a       <---------YAB1    --------->TOE2(3) --------->ANAC58 ---- >RAV1(2)          <------ZmHOX2a(2)    <---------GLK1(2) <----------DOF2--------->ARR14(2) <--------   catactaaaatgacagagacgatcaagagcataaacgatacacattctcatactttacctctttcattaaacgacgatatgctcgtaatccccaaggttc  3325500  Previous    Next  AGI:  At3g10640.1    Description:  VPS60.1. similar to VPS60.2 [Arabidopsis thaliana] (TAIR:AT5G04850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15822.1); contains InterPro domain Snf7; (InterPro:IPR005024) Range:  from: 3323315    to: 3325044    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10650.1    Description:  similar to nucleoporin-related [Arabidopsis thaliana] (TAIR:AT5G20200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66025.1) Range:  from: 3325175    to: 3330897    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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