Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->TOE2(3)                     <----                                                         --------->YAB1                         <----                                              <---------ANAC58                                <------         --------->CCA1(2)                    <---------ANAC58                               <-------GAMYB  --------->ANAC58                           --------->ZAT2                                 <--------  --------->ANAC58                        <---------At4g35610                              <---------TOE2(3) --------->DOF2                   <---------MYB52(1)    <---------ATHB12---------->DOF2    <---------YAB1 --->At4g35610                 <-------TEIL<------ZmHOX2a(1)<---------ICU4          <---------DAG2 ----At4g35610     --------->ANAC46     <-----------RAV1(2)<---------YAB1           <----------DOF2 <   tacaaagcaagataagagtaaacacaagagacattcgtttagtcaggagcttgggcaaatcatcaatgctactctaaaggagataactttattttggttg  3318600                                                                                                   <-                                                                                                   -- --MYB83 <---------TOE1(2)      <---------ARR11(1)                                                 -- --MYB46(1)                     --------->ARR11(3)  --------->ANAC58                       --------->TOE1(2) --P    ------>ZmHOX2a(1)      <---------CCA1(2)    --------->ANAC58                       --------->TOE2(2) -MYB46(3)         --------->At4g35610          --------->ANAC46                         --------->GLK1(2) ---------MYB46(3) <---------At4g35610 <----------DOF2                   --------->TOE2(3)-----------   gattgttgtcctagtttcttcatctgaaaaatcaaatctttctttcttatactcaagctaagaattgttgagaaacattagagacgaagagaacctgaga  3318700                                                                            ------>NtERF2                 --------->GLK1(2)                                          <---------ATERF1(1)             --------->ANAC58                                              --------->ARR14(2)             --------->ANAC58                                              <---------ARR14(2)           --------->MYB52(1)                                             --------->ATERF1(1)          <---------ARR14(2)                                             <---------ATERF1(1)        ----------->ARR10                                                <---------RAP2.3(1) --------ANAC55(2)                                              <<<<<<<<<TBF1     ------>ZmHOX2a(1) ------->ANAC58 <---------GLK1(2)                           <---------MYB52(1) ------>ZmHOX2a(1) ------->ANAC58 --------->ARR14(2)                          --------->ARR14(2)<---------ALFIN1 >RAV1(2) --------->ARR14(2)                  --------->WRKY38(1)   ---------->DOF2   taagtaagagaagaaacggaatctctgaatcggactggcccatgagagtcgacccattccccgttcttcttcaagcggctcctccttcgctgttcagttt  3318800                                                              --------->ARR14(2)                                                              <---------ARR14(2)                                --------->LBD16             ----------->GT1                                ------>NtERF2        --------------->AGL15                               --------->ANAC46     ----------------->AGL2                     ------                     ==================================HOX2a_HOX2a                            <------ZmHOX2a(2)                     ------>ZmHOX2a(2) <---------YAB1<---------------AGL15                   --------         --------->ZAT14      <---------LBD16   ------>ZmHOX2a(1)                            <-------        --------->ARR14(2)  <---------ARR14(2) --------->TOE2(3) <---------ANAC55(2)    <-----------GT1        <---------ARR14(2)  --------->ARR14(2) --------->TOE1(3)<-------TEIL     ----------->GT1<----   caattccacagttctgtcttcgatctccagtttccgccatggtcattgtccttaaccagaagtggatacataaaaatcgaaaaccgtattaaaccgatcg  3318900                                               <------------CBF                                              --------->ATHB12                                              -------->ATHB1                                              <---------ICU4                                   --------->YAB1                           --------->ARR14(2) --------->ATHB51                     --------->TOE1(3)                           <---------ARR14(2) -------->HAHB4                  <---------MYB52(2)                        --------->ANAC46      <---------AHL20(2)              --------->MYB46(3)       --------->MYB52(1)------->GAMYB       <---------YAB1         --------->ANAC58               <- >ZmHOX2a(2)           <---------LBD16       --------->ICU4         --------->ANAC58     <----------DOF2 ->ARR14(2)           --------->MYB52(1)     <---------ATHB12       --------->ANAC46     <---------DAG2 --ARR14(2)           <-----------GT1        <---------ATHB51<---------------AtSPL8--------->TOE2(3) -----DEAR3(2)      <---------AHL20(2) --------->GLK1(2)<---------ZAT6      <-----------GT1        --   gttcaaggctaatggaatctaatttaacggaacctattaataatctaattattgggtaatgttagagtacaagcctattaacaaaccctaactttaccca  3319000                                                                   --------->ZAT14                                                             <----------DOF2                                                           ------>NtERF2                                                           <---------At4g35610                                                          --------->DEAR3(1)                                                         <------NtERF2               <---------ARR14(2)                                                         --------->ATERF1(1)         ----------------                                                         --------->DEAR4(2)         --------->WOX13(1)                                                         --------->RAP2.3(1)       <---------WRKY38(1)                                                        <---------RAP2.3(1)        <---------WRKY12                                                        <---------ATERF1(1)       --------->WRKY18(1)                                                        ------>NtERF2            <-----------HVH21                                                        <---------At4g35610     --------->LBD16                                                       <---------ATERF1(2)  <---------ARR14(2)                                                       --------->ATERF1(2)  --------->ARR14(2)    ---                          ---------->ID1             <---------At5g28300   --------->At4g35610    <--                      <---------DAG2   <----------DOF2 --------->DEAR3(1)  <---------At4g35610   <---           --------->ANAC58     *TSS  <---------ANAC58 --------->ANAC46    <---------ZAT2    <-------           --------->ANAC46 <----------DOF2      --------->ARR14(2)--------->At4g35610    <---------SPL1(1)           --------->ANAC58<------------------------ANAC81--------->RAP2.3(2) <---------LBD16<------- --------AHL20(2)     <----------DOF2 <---------ANAC58<---------RAP2.6(2)  --------->ZAT2<---------SPL1(2) ------->AHL20(2)  <-----------GT1<----------DOF2<---------ARR14(2)<---------At4g35610 --------------   tataaattcttgcacacaagtttactttttctttttctttgctttcttctgtatttgccgccgcttctctgctctccagctccggtcaatccgtacaggt  3319100                                                                                                  ---                         --------->ZAT14                                                          <--                       --------->ANAC58                                                           <--     ----------------------->TaNAC69(2)                                                           ---    ----------->GT1    --------->ANAC58                                                 -------->HAHB4 -->SPL14              --------->bZIP60(2)                                              --------->YAB1 ------>HSFB2a(1) --------->ANAC58                                                      --------->AHL20(2) -------HSFB2a(1) --------->ANAC58                                                  --------->AHL20(2) ----TEIL         --------->ANAC46            <------ZmHOX2a(1)                     <---------AHL20(2) --------AtSPL3  --------->RAP2.6(3)      --------->TOE1(2)                  <---------CCA1(2) <----- --------AtSPL8 --------->MYB52(1)        --------->TOE2(2)       ----------->GT1<----------DOF2 ---- ->AtSPL3    --------->YAB1 <-----------------AGL3        ---------->DOF2 <-------TEIL <---------YAB1   acgttctggttacattcaaaacggcacttcaccataaatgaaaacataggagaatttcataaaagaagttgtgaaattcatctcttttaattatagatgc  3319200           <---------GLK1(1)           --------->GLK1(1)                                                 --------->ATHB51          <---------AGP1                                                     --------->ATHB12          --------->ARR11(3)                                                <---------YAB1 ------>At4g35610                                                       ------->GAMYB -------ZAT2======================HOX2a_HOX2a                          --------->ANAC46 -------At4g35610              <---------At4g35610                    --------->RAP2.6(3)    ------>ZmHOX2a(1) ------>ZAT2------>ZmHOX2a(2)  <---------CCA1(2)                     <-----------GT1     --------->ARR14(2) --TEIL   <---------ARR11(3)  ------->TEIL                           --------->MYB52(1)  <---------ARR14(2) --->TEIL<---------CCA1(2) ------>ZmHOX2a(1)         ----------------->AG   --------->ICU4  ---------   agctcgattttggatctctcttgatgttcctgcatctctctagattgtatcaatacccaaatgttgaaatttaacggcataattgaaattgaatcctcat  3319300                                      --------->YAB1                                   <----------DOF2                              <------MYB83                              <XXXXXXXXXXXXXXXXXXXXMIR420                              <---------MYB46(3)                 ------->TEIL                --------                              <------MYB46(1)                    <---------ARR14(2)      --------->DAG2                          <---------MYB46(3)<---------AHL20(2)   --------->ARR14(2)     ---------->DOF2 >TOE2(3)                 <-----------RAV1(1)                   <---------CCA1(2)  ----------->GT1   ttgtagttactcgagactcttatgtcaattgttggttctttcatagtttattagtcagaagttgatgtatctgcatttctctgatttgtataaagtagta  3319400                                                                                                    <                                                                                                    <                                                                                --------->MYB52(1) <-                                                                            ----------------->AG   <-                                                                            ----------------->AGL1 --                                       <--------P                          --------->SPL7          --                                     <------MYB46(1)                     <---------SPL7            --                                     <------MYB83                       <---------ANAC58           --                    <XXXXXXXXXXXXXXXXXXXMIR158B                         <---------ANAC58           --                    <XXXXXXXXXXXXXXXXXXXMIR158A                        --------------->AtSPL3      --                  <<<<<<<<<<MYB80    --------->ANAC58                  <---------------AtSPL3      <-                 <---------MYB46(3)  --------->ANAC58             <---------ANAC58                 --       --------->KAN4(2)<-----------------AGL2  --------->DAG2    <---------ANAC46                 --      <---------KAN4(1) <-----------------AGL1 ---------->DOF2    <---------ANAC58 ----------->GT1 -- --->GT1     ----------->HVH21     <-----------RAV1(2)  ---------->DOF2--------------->AtSPL8   <----   taatgtgaatgttctctgatggtttgtctgaatttgggcaggtaagtcaaaaagttgtgaaagatgggtcgtgttcgtaccaaaacggttaagaagtctt  3319500  Previous    Next  AGI:  At3g10610.1    Description:  40S ribosomal protein S17 (RPS17C). Identical to 40S ribosomal protein S17-3 (RPS17C) [Arabidopsis Thaliana] (GB:Q9SQZ1); similar to 40S ribosomal protein S17 (RPS17B) [Arabidopsis thaliana] (TAIR:AT2G05220.2); similar to 40S ribosomal protein S17 (RPS17B) [Arabidopsis thaliana] (TAIR:AT2G05220.1); similar to unknown [Populus trichocarpa] (GB:ABK93227.1); contains InterPro domain Ribosomal protein S17e; (InterPro:IPR001210) Range:  from: 3319032    to: 3320154    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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