Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->ARR14(2)                 <---------ARR11(3)                 <---------AGP1                 <---------ARR14(3)                 --------->ARR14(3)                 --------->ARR11(3)          <---------PCF5         <------NtERF2         ----------->HVH21        ------>NtERF2        --------->LBD16        <---------ATERF1(1)      <---------LBD16     ------>NtERF2--------->CCA1(2)    --------->ANAC46    =================================bZIP_DOF    --------->TGA1a    <---------TGA1a------>ZmHOX2a(2)    --------->bZIP60(2)    <---------O2 --------->AGP1                  <----------DOF2    <---------ALFIN1                          --------->GLK1(2)            <---------ARR11(3)    --------->O2 <---------ARR14(2)           --------->ARR11(3)           --------->ARR11(3)    --------->ANAC58                --------------->AGL15          <---------AHL20(2)    --------->ANAC58               ----------------->AGL1      --------->AHL20(2)   --------->ATERF1(1)      <---------AHL20(2)<---------ARR11(3)   <---------YAB1  <---------ALFIN1<------ZmHOX2a(2)----------------->AGL2 --------->AHL20(2)  <---------ATERF1(1)     <----------DOF2    <---------GLK1(2) <---------AHL20(2) ----->NtERF2  ----------->ARR10   ----------------->AG   <---------AHL20(2)      ---------->DOF2<--- ------->RAP2.6(2)--------->ARR14(1)<---------------AGL15 <---------AHL20(1)  <----------DOF2    <---   gcggccacgccgggaccaagatctggttcttttatttcccataacaagaatctttttcattttatttatattatagagaacttttaaagcagtctggtta  3285500               --------->GLK1(2)      <---------HSFB2a(2)     ------>ZmHOX2a(2)     =============HOX2a_HOX2a                                                       --------->AHL20(2)     ======================HOX2a_HOX2a                                            <----------DOF2   --------->ARR11(3)                                                             ------>ZmHOX2a(1)   <---------AGP1                             ------->TEIL                       --------->TOE2(3)   <---------ARR14(2)     <-------TEIL    <---------------AtSPL8             --------->KAN4(2)   --------->ARR14(2)---------->DOF2      --------------->AtSPL8             --------->YAB1        -- ------YAB1<------ZmHOX2a(1)           --------->AHL20(2)                   <---------KAN4(1)      <- --------RAV1(1)    <------ZmHOX2a(1)  <---------AHL20(2)  ----------->GT1--------->YAB1        -----   tgttggatctggaggaaaatcaggaaagtacatttgattttttaaatgtactcatatgaaaatgtaaacaaaacatgaataatcctttatatatgggagt  3285600         <---------AHL20(2)       <---------RVE1(1)      --------->ARR11(3)      <---------GLK1(2)                                                             <---------ZAT14      <---------ARR11(3)                                      <---------ARR11(3)    --------->ZAT14 ------->TCP15(1)        <-----------GT1                     <------ZmHOX2a(1)    --------->ZAT14 --------PCF2   ---------->ID1                  --------->GLK1(2)             <-----------GT1       < ---->ALFIN1  <-----------RAV1(1)           ----------->RAV1(1)<------ZmHOX2a(2)  <---------ZAT14   -   gggacctagattttttttgttgctatttaacaaaacaacatttctccaacattctgaaaaacaggatcacttgttttgtttcactgtacagtagaagagt  3285700                   --------->AHL20(2)                   <---------AHL20(1)           --------->ZAT14           <---------ZAT14       <---------AHL20(2)                            <---------TOE1(2) --------------->AGL15          <---------YAB1                              <---------ANAC58 <---------------AGL15       --------->ICU4                                 --------->MYB52(2) -----------GT1    <---------AHL20(2)      <---------AHL20(2)   <---------TOE2(3) <---------GLK1(1) -------->ZAT6     --------->AHL20(1)<---------AHL20(2)  <---------MYB59    <---------ANAC58     ----   tttcactaactagtaaactaattaattagtgatttttatttttttttaatcaactcaggcctaattgagataacttgttcgtgggtatcaggcccaatat  3285800                                      <---------AHL20(2)                 <---------AHL20(2)                                 --------->AHL20(1)            <---------YAB1                                 <---------AHL20(1)          <---------AHL20(2)                            ------------>CBF                 --------->AHL20(2)                        <---------ARR11(3)               --------->AHL20(2)                        --------->ARR11(3)               <---------AHL20(2)               -----------                       --------->CCA1(1)            <------ZmHOX2a(2)    --------->AHL20(1)                       --------->RVE1(1)          <---------At4g35610    --------->ARR11(3)       ---                     --------->AHL20(2)    <---------LBD16  <---------AHL20(2)           <---------HSFB2a(2)                     --------->YAB1  <---------YAB1--------->ARR11(3)    <---------AHL20(1)      *TSS                    <---------ATHB12<---------AHL20(2)  --------->AHL20(2)         <-----------GT1--- ------>DOF2    ------------>CBF <---------ARR11(3)<---------ARR11(3)   --------->ICU4   --------->HSFB2a(2)   aaagtattctaaggcctactcaataatatctccaatatttttattttcggacagatcatttatttatttttgtaatattttgttttttcttctcgtaaaa  3285900                                                             <---------ARR14(2)                                                      ----------->HVH21                                                      --------->ZAT18                                                    --------->At4g35610                                                    --------->ZAT2      --------->ANAC46                                                    --------->GLK1(1)   --------->ANAC58                                                    <---------At4g35610 --------->ANAC58                                                    <---------ZAT2      --------->ANAC55(2)                                                  <------NtERF2        <---------LBD16                                                --------->ETT(1)    <-----------HVH21                                              <-----------HVH21    <----------DOF2                 --                                          ------>ZmHOX2a(2)  --------->ARR14(2)                    -- >GT1    --------->ANAC46               --------->ARR14(2)   --------->ARR11(3)             --------- ------>TOE1(3)                        <------ZmHOX2a(1)     <-----------ARR10           <---------At4g35610 ------>TOE2(3)               -------->P<---------ARR14(2)   <---------ARR11(3)       <---------AHL20(2)   ccctaaaatatacaaaaccctcaaattcagtctaccagcgaggatcgatgtcggagctcacagtatctcctttcacgcattaactcaatttatctgctaa  3286000                                                         <-------GAMYB                                                        --------->ALFIN1                                                        <-----------RAV1(1)                                                      <---------MYB52(1)                                                    =============MYC_MYB                                                    <---------ANAC46                                                    =======================bZIP_DOF                                                    --------->TGA1a                                                    <---------ANAC58                                                    <---------ANAC58                                                    <---------O2                                                    <---------TGA1a                                                   <------NtERF2                                                 --------->RAP2.6(2)                                                 --------->RAP2.3(2)                                                 <---------DEAR3(1)                                                 --------->ATERF1(2)                                                 --------->RRTF1(3)                                                 --------->RAP2.3(3)                                                 --------->DEAR3(1)                                                 --------->RRTF1(2)                                                --------->RAP2.6(1)                                                --------->RRTF1(1)                                                --------->DEAR4(2)                                                --------->ORA47(2)                                                --------->RAP2.3(1)                                                --------->ERF1                                                --------->ATERF1(1)                                               ------>NtERF2                                               --------->ABI4(1)                                               <---------ATERF1(1)                                              --------->DEAR3(1)                                              --------->ANAC46                                             --------->MYB46(3)                                            <---------At5g28300                                   <--             --------->ANAC58              <---------ALFIN1                                       ---             --------->ANAC46            <-----------HVH21                                    -------             --------->ANAC58       ==========================bZIP_DOF                        -------         <-----------HVH21         --------->YAB1--------->DREB2C(2)       <---------ANAC58   <------ ------->TOE1(3)                  <---------ATHB12------>NtERF2 <----------DOF2           <---------- ------->TOE2(3)  <---------MYB52(1)---------->DOF2--------->ATERF1(1)     <---------ANAC46 --------- >At4g35610<---------ALFIN1     --------->WOX13(1)--------->ABI4(1)        <---------ANAC58 <--------   accctaaatagcttcacgccgtttttctaattctcaatcaaagcttcaccgccgccgtgtgttgttctttctccgagtcgtgttctctaatctcaggtga  3286100   <----------DOF2 -------HSFC1(2) ------>HSFC1(2) -->ALFIN1                             <---------ICU4 ---->HVH21                    ----------->GT1        --------->ARR11(3)             <---------MYB52(1) ---REM1(1)               <---------ANAC58          <---------TOE2(3)               <------MYB46(1) -RAV1(2)                 <---------ANAC58   <----------DOF2    --------->LBD16     <------MYB83 >At4g35610        <---------MYB52(1)  --------->YAB1 <---------ARR11(3) --------->YAB1          <--- -At4g35610       <----------DOF2    --------->ARR11(3)       <---------LBD16       <---------DEAR3(2)   agcttctttcttcaatttgcctttggtttcgtttcgaaaaatcatgtcttttctaagatttatctccggtgctaatcagaattagtcggtatctaatggg  3286200                                                              --------->ANAC55(2)                    <------MYB46(1)                          <---------TOE2(3)                    <------MYB83--------->AHL20(2)      --------->MYB52(2)                   --------->MYB111(1)                 <-------TEIL      ============================                   <---------AtMYB61                <------MYB46(1)      <------ZmHOX2a(2)      <----                   --------->MYB59  --------->YAB1  <------MYB83        --------->ARR11(3)   <-------       <-----------GT1          <---------AHL20(2) --------->MYB59   <---------TOE2(3)    <---------ZAT14 ------GLK1(1)     --------->MYB46(2) <---------YAB1<---------MYB46(3) <------ZmHOX2a(1)  --------->ZAT14   tttctgaattatctgtctggtttggtatcagtgtttaattgtaattgagttgtttggttcgtttaggtgataaggatcaagatggagattagttcagagg  3286300                                                    <---------MYB46(3)                                                    <------MYB83                                                    <------MYB46(1)                                                   <---------AtMYB61                                                  <--------P    <<<<<<<<<ARR2                 <---------At4g35610    <<<<<<<<<ARR1           ------>ZmHOX2a(1)    <-------GAMYB ==HOX2a_HOX2a            ----------->RAV1(2)   <---------MYB46(3)          <---------AHL20(2) --ZmHOX2a(1)            ------>NtERF2          --------->ATHB12           <---------YAB1    -------- --At4g35610         <-----------GT1<---------------AtSPL8     --------->TOE2(3)<-----------RAV1(1)   ataacaatcttatggagaaggttttgcctcctgttgagcaggtactaacttggttggttttgaattcttaacagtttattatttgtgggttttggcaaag  3286400  Previous    Next  AGI:  At3g10530.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33340.3); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33340.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33340.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68841.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain BING4, C-terminal (InterPro:IPR01295 Range:  from: 3285897    to: 3288885    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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