Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <----------DOF2                                                         -------->P <---------HSFB2a(2)                                                         ------->TEIL           <---------ZAT14    <---------MYB52(1)                               <---------ARR11(3)    --------->LBD16   --------->At4g35610                              <---------CCA1(2)    <---------LBD16   <---------At4g35610     <---------ANAC58       <---------CCA1(2) --------->HSFB2a(2) <-----------RAV1(2)       <---------ANAC58  ------->GAMYB   <-----------------AGL3             <---- ------->TOE2(3)           <---------AtLEC2-------->P--------->ARR11(3)<---------ARR14(2)       ----- --------AtSPL3       <---------AtLEC2<------ZmHOX2a(1) <-----------GT1--------->ARR14(2)     -------   acctcagttgatttcaacatagttgcattgcatggtagaaggactaaccctcatatatctacctcttcttttggaaccggagagtacttatccaagtgat  3244900                                                                              --------->GLK1(2)                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                             --------->GLK1(1)                                                                           <------NtERF2                                                                          ------>NtERF2                                                                          --------->LBD16                                                                         <---------ANAC46                                                                        <---------LBD16                                            ------->PIF5              <---------DEAR3(1)                                            <-------PIF5             <-------TEIL ----------->GT1                --------->ZAT2             --------->ANAC58         --------->ARR14(1)      ---------                <---------ZAT2  --------->ATHB12                    --------->GLK1(2)       <--------                <---------At4g35610        --------->ANAC58         --------->CCA1(2)      <---------CCA1(2)      ------->TEIL             <---------YAB1 <-------TEIL         <---------GLK1(2)      <---------ARR11(3) -----------AtSPL8----------->TGA1   <---------ANAC46              <---------ARR14(2)     --------->AHL20(1) ---------->AtSPL8----------->HVH21  <---------ANAC58              --------->ARR11(1)     <---------AHL20(1) -->ATHB12      --------->At4g35610  <---------ANAC58              --------->ARR14(2)     --------->ARR11(3)   tgtacatgaatctcttgctgctgacgagatagtatcattgcttgcacgtccatttgaatcggtttcaaagattcggcgggaatcttgtaaaatatatctt  3245000                              --------->MYB52(1)                            <---------MYB55(2)                            <---------MYB52(2)                            --------->MYB46(3)                        <------NtERF2                     <---------At4g35610                     --------->At4g35610                    <---------RAP2.3(1)                    <---------ATERF1(1)                   <---------DEAR3(1)                  --------->RAP2.6(3)                               --------->ARR14(2)                ----------->HVH21  <---------DAG2                   <---------ARR14(2)   --------->REM1(1)------>NtERF2  <----------DOF2                 <------ZmHOX2a(1) >ARR11(3)     --------->SPL7------->GAMYB                     ---------->DOF2                      - -ARR11(3)--------->ALFIN1----------->RAV1(1)            <----------DOF2                    <--------   ctactacatcaagtgggaacgacggctgcaacaaacgctttatggaatccatggacgctctttgcaaaaggatttgaatcgaatcagagacattgattct  3245100                      <---------DAG2                      <----------DOF2      <---------TOE1(3)                        <---------TOE2(3)                                   <-      <---------TOE2(3)   ---------->ID1 <------MYB46(1)                              <------ZmHOX2a(2)   <---------YAB1 <-----------GT1        <------MYB83---------->DOF2                 <---------ARR11(3) -------->ICU4---------->ID1            --------->MYB59                              --------->ARR11(3) -GLK1(2)   <-----------RAV1(1)       <---------MYB52(1)                  ----------->GT1         ---   tgattatgaaggttttgttgtttcctttttcgttttctcagtttggtttaagaatttaagcgcgaacaagggaagagggaaacaagagatcaatttgtaa  3245200                    <-----------GT1              ------->TEIL      <---------------AGL15                             ------>MYB46(1)         ----------->GT1        ------>ZmHOX2a(1)               <---------DOF5.7(2) <---------ATHB12<    <---------ALFIN1--------->MYB52(1)                       --------->ANAC46     ------>MYB83      <   --------->MYB46(3)       <-----------GT1                  --------->LBD16   ----------------->AGL3  --------->SPL7  --------->DOF5.7(2)                      --------->DEAR3(2)------>MYB46(1) ------>MYB83 ------>MYB83<---------CCA1(2)  --------------->AGL15     --------->MYB52(1) ------>MYB83    ------>MYB46(1) ------>MYB46(1) <----------DOF2=================================================================MADS_MADS --------MYB59--------->GLK1(2)--------->TOE2(3)     --------->ANAC58      ------->GAMYB   <---------MYB59 ------------>AtSPL8<---------DOF5.7(2)              --------->ANAC58      <---------MYB59 --------->AtMYB61   accgaaccacattgtgaatctttaacggtttatcctcattttagtaatacagagcaagcgaaccggcaacgtttcaaccgaaccaaatgaagaccaaact  3245300                                                                                                <----                                                                                             --------                                                                                             <-------                                                                                           <---------MYB46(3)                                                                                           --------->HSFC1(2)                                                                                           <---------DEAR3(2)                                                                                           <---------HSFC1(2)                                                                                           --------->HSFB2a(1)                                                                                          <---------DEAR3(1)                                                                                        ------------>AtMYB77                                         --------->LBD16     <-----------HVH21 --------->HSFC1(2)           --------->ICU4               <---------LBD16     ------>ZmHOX2a(1)  <---------HSFB2a(1)         <---------ICU4                <---------LBD16   <------ZmHOX2a(2)     --------->HSFB2a(1)         --------->ATHB12             ==========================HOX2a_HOX2a    <---------HSFC1(2) ---------TOE2(2)                 <-----------GT1   <-----------GT1     <-------TEIL   ----------->HVH21 ---------TOE1(2)                 *TSS------>ZmHOX2a(1) <---------ARR14(2)     <---------MYB46(3)   <   cgtatgtatagtcattagtcactctcactctcattttttcctccgggattcaaatttcgatcctgttagaggggttcacgatggttcgagcgacggttct  3245400                             <---------ARR14(2)                             --------->ARR14(2)                             --------->GLK1(2)                             ------->TEIL                         <-------TEIL   <---------DREB2C(2)<---------HSFC1(2)    --------->ANAC58   <---------DEAR3(1) --------->HSFB2a(1)   --------->ANAC46   <---------DEAR4(1)<---------TOE1(3)      --------->ANAC55(2)   <---------At1g77200--------->HSFC1(2)    --------->ANAC58  --------->DDF1  ----------->HVH21     <---------ANAC58 -----YAB1  --------->ANAC46 <-----------ARR10                                    <---------ANAC46 ->ARR14(2) --------->ANAC58 <---------ARR11(1)                                <---------AGP1 --ARR14(2) --------->ANAC58<---------ARR14(1)  <---------ARR11(3)<---------MYB52(1)     <---------AHL20(2) -----------RAV1(1)  <---------TOE2(3)  <---------ANAC58 --------->ANAC46   ------>ZmHOX2a(1)   gaatgtcggtgatcacgccagtgaaggttcgaatctagtcttgcttacgaaatctctcttcgcaatctgttcgtcttcctagttctgtgttttaatttga  3245500                                                                                        <---------ARR11(3)                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                 <----------DOF2                                                                                --------->TOE2(3)                    --------->GLK1(1)                                      --------->YAB1                   <---------ARR14(2)                                      <---------ICU4 ------>ZmHOX2a(2)                   --------->ARR14(2)                                      -------->HAHB4<---------GLK1(1)               <---------LBD16                                          ------>MYB46(1) <---------AGP1              <---------LBD16                                           ------>MYB83    --------->ARR11(3)     --------->At4g35610                         ----------->GT1      --------->TOE2(3) <-----------ARR10     <---------At4g35610  <---------At4g35610 <---------At4g35610     <---------MYB59  <---------CCA1(2)   aatagagagctcacatctcgggattttcagatggttttgttccgatttagatgctaaattgagtctcagaaacctaataatacctttgtggatcttcgct  3245600                                                          --------->ANAC58                                                          --------->ANAC58                                                         --------->ZAT18                                                   <---------AHL20(2)                                           <---------ANAC58                                           <---------AtLEC2                                           <---------ANAC46 <------NtERF2      <---------ZAT6                       <---------ANAC58--------->ZAT18       <---------AHL20(2)   aattgttagtgtttctcttcgcattcgattgtttcaatttcatttgcttggaatttatgggcgcaatgttgtttttcatcgattttatgggtttcttcag  3245700                                                                            --------->ZAT18                                                                            <---------ZAT18                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                          --------------->AtSPL3                                                                          --------------->AtSPL8                                                                       --------->ALFIN1                                                                     <------MYB46(1)                                            <---------YAB1           <------MYB83                                       <---------ICU4               --------->MYB46(2)                                      <---------AHL20(2)            --------->MYB111(2)                                      --------->AHL20(2)            <---------MYB46(3)                                     <---------WOX13(1)             --------->MYB55(2)                                   --------->ATHB12                 <---------AtMYB61                                   <---------ICU4                   --------->MYB111(1)                                  <---------YAB1                   <--------P             ---------->DOF2                           <---------DAG2 <-----------GT1          <---------MYB55(1)     --------->MYB52(1)              --------->ANAC46    --------->ICU4 ----------->ARR10<---------MYB52(1)---------->DOF2   tttttgctctaattacacgagaatgctagcctttccatgattaattacgattagatttgtttgaaatcggtaggtgtgcgtactaacaaagctaaaggag  3245800  Previous    Next  AGI:  At3g10439.1    Description:  unknown protein Range:  from: 3245236    to: 3245334    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10440.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04320.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO16756.1); contains InterPro domain Shugoshin, C-terminal; (InterPro:IPR011515) Range:  from: 3245334    to: 3248992    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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