Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->MYB46(3)                              --------->REM1(1)                     ------>ZmHOX2a(1)                    --------->TOE2(3)                                                  --------->ANAC58                 <---------ARR14(2)                                         --------->AtLEC2      --------->ANAC55(2)   ----------->RAV1(1)                             --------->ANAC58     --------->MYB59--------->TOE1(3)       --------->YAB1                  --------->ANAC58     <---------TOE2(3) ---------->DOF2  --------------->AGL15         --------->At4g35610  <----------DOF2--------->ARR14(2)  ------->GAMYB                    <---------At4g35610      <----- -------GLK1(2) <---------GLK1(1)   --------->MYB46(3)          <------ZmHOX2a(1)      --------->ANAC58 --->YAB1       --------->GLK1(1)   <---------MYB111(2)      <------ZmHOX2a(1)       ---------->DOF2<   gagtctttaggtaatggcaaatccttagagcaacaacaacaacctagaatagtagagtcgataggaggaggtagcagcatgcaaggggaaagcaagtctt  3232200                                                                                                   <-                                                                                                  ---                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                 ---------->ID1                             ---------                                             <----------DOF2       <---------YAB1           =========                                    --------->ANAC55(2)         <---------YAB1              <--------      <------ZmHOX2a(1)             <---------ANAC58 ================================================   <-----------RAV1(2)--------->HSFB2a(2)    --------------------->WRI1                     ========= -----DOF2   ------->TEIL           <---------ANAC58 <----------DOF2                        --------- ---------At4g35610<---------AGP1  --------------->AtSPL8    --------->GLK1(2)   --------->YAB1<-----   tgagcacaggagttgcatctagttctggtattcatttttcgtaacttctttgttccttttgaaattctgatcatttacatcgataataactcacacgtag  3232300     ------>ZmHOX2a(1) <---------ARR14(2) --------->ARR14(2) --------MYB46(3) ------>ALFIN1 --MYB46(1) --MYB83 --->MYB111(2) ----AtMYB61 >O2<---------ANAC58 >TGA1a          <---------MYB46(3) >ANAC46      <---------MYB46(3) -O2<---------ANAC58 >ANAC58      <------MYB46(1) =========================================bZIP_DOF -TGA1a       <------MYB83 =bZIP_DOF   <---------AtMYB61                           <---------ARR14(2)                  <------- ====================MYC_MYB                             --------->GLK1(2)          <---------ZAT18 >ANAC58  <-----------RAV1(1)                            --------->ARR14(2)         --------->ZAT18 ----TOE2(2)<--------P         ---------->DOF2  <----------DOF2            <---------ARR11(3)--------   gtggttccttacatgttggtggtgagacgatgaaaaagattgaacaatgacttttggagaatccctgtttgatacaacatctgtagttcacaaaatttgt  3232400                                                            <---------YAB1                                                          --------->YAB1                                                          -------->HAHB4                                                         --------->ICU4                                                         <---------ATHB12                          ------->GAMYB                  <---------YAB1                         <---------MYB52(2)           ------>ZmHOX2a(1)              <----------DOF2                      --------->MYB46(3)           ---------->ID1               <---------HSFB2a(2)             <---------YAB1--------->MYB52(1)     <-----------GT1               --------->HSFB2a(2) --------AtSPL8  ----------->GT1           --------->AHL20(2)                <-----------GT1       -- ------->AtSPL8  --------->YAB1            <---------AHL20(2)          <---------MYB52(1)<---------AHL20(2)   acttcataatccatttctattgtaacaactaacaaatttaagttataaattttttcctaatgataatttgtctggtatgtttccagactttttatttgca  3232500                         <---------ANAC58                                                          <-           <---------AHL20(1)                                                                    <---           --------->ARR11(3)                                         <---------AHL20(2)         ----           --------->AHL20(1)                                         ----------->TBP            ----           <---------ARR11(3)<---------ANAC58                         --------->AHL20(2)         <---        --------->AHL20(2)   <---------ANAC58               <----------DOF2                 <--------      ----------->GT1    <---------ANAC58                ---------->ID1                  ---------->DOF2    ---------->DOF2    <-----------GT1                 <---------MYB46(3)   ----------->TBP --------- --------->GT1  <---------AHL20(2)            <---------AHL20(2)------------>CBF     <----------DOF2   aatgtaaaaagaaaatatttgattttttcttgcttcattacatcgaattttttttgtttgttctttaccaatataaatacaaataccctttgaaagctca  3232600 ---------DOF2 ------ZAT2                                               <---------ICU4      --------->ANAC58 ----->ZAT2                                               --------->YAB1      --------->ANAC58 ----->At4g35610                                         <---------YAB1      --------->SPL7 ------At4g35610                                       --------->YAB1       <------ZmHOX2a(1) -At4g35610                   <---------ANAC46        <-------TEIL ------>NtERF2 >At4g35610  *TSS  --------->DAG2               <------ZmHOX2a(1) --------->DEAR3(1)   gctttcaaaactggaacacaaaaattgaaattaagtggaaatgaagaagaggaagattcatcatagcgacgacgaagaggacgacactttctactatcgc  3232700                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                      <---------ATERF1(2)                                                                                      <---------RAP2.3(2)                                                                                      <---------RAP2.3(3)                                                                                   ----------->HVH21                                                                                  ===================                                                                                  ------>ZmHOX2a(2)                                                                                 <------ZmHOX2a(2)                                                                                 ====================                                                                                <-----------ARR10                                                                                --------->GLK1(2)                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)                                                                               <---------ARR14(1)                                                                               <------NtERF2                                                                               <---------CCA1(2)                                                                             <---------DEAR3(1)                                                                             <---------ANAC46                                                                            <---------At4g35610                                                                            --------->ATERF1(1)                                                                            <------NtERF2                                                                           <---------ORA47(2)                                                                           <---------RAP2.3(1)                                                                           <---------ATERF1(1)                                                                           <---------ERF1                                                                           <---------RAP2.6(1)                                                                           <---------DEAR4(2)                                                                           ------>NtERF2<------NtERF2                                                                          <---------DEAR3(1)                                                                          <---------RAP2.3(3)                                                                          --------->DEAR3(1)                                                                          <---------ATERF1(2)                   <---------ALFIN1                                       <---------RRTF1(2)                   --------->DEAR3(1)                                     <---------RAP2.3(2)                   --------->AtMYB61                                      <---------RRTF1(3)                  --------->MYB46(3)                                      --------->ATERF1(2)                --------->DEAR3(1)                    ------>NtERF2      <------NtERF2<---------DEAR3(1)                <---------ALFIN1                      --------->LBD16    <---------ABI4(1)                --------->AtMYB61                    --------->ANAC46    --------->ATERF1(1)               <------NtERF2              --------->HSFB2a(1)           <---------ATERF1(1)               --------->MYB46(3)        ------>MYB83--------->DEAR3(1) --------->LBD16<---------RAP2.3(1)              <---------ATERF1(1)        ------>MYB46(1)                ------>NtERF2 <---------RAP2.6(2)              ------>NtERF2              -------->P <---------LBD16   <---------LBD16 --------->ATERF1(2)             --------->PCF2            <---------MYB111(1)        <---------ZAT2--------->ARR11(3)            <------NtERF2              --------->AtMYB61          --------->At4g35610 <---------ANAC46           <---------ATERF1(1)         --------->DEAR3(1)         <---------At4g35610--------->RAP2.6(3)          <------NtERF2                <---------MYB111(2)        --------->ZAT2<---------AGP1         <---------LBD16               --------->MYB46(3)    --------->YAB1<---------RRTF1(1)     ---      <-----------HVH21                <---------MYB46(2)   <---------ATHB12<---------LBD16  <-------     --------->ANAC46         --------->TOE2(3)    ------>ZmHOX2a(1) --------->MYB52(1)------>NtERF2   ------>ZmHOX2a(1)          --------->TOE1(3)    =====================================HOX2a_HOX2a   tattcctccgtcgcggcaccaccaccttcgaaccctaaacaccaaccttcttcctccgccaaatcatcagctcccggcggcggatctggcggcttagctc  3232800                                                                      --------------->AGL15                                                                      <---------ALFIN1                                                                     <-----------------AGL1                                                                     <-----------------AG           --------->ANAC46                                          ----------------->AGL2         <---------ALFIN1                                   --------->ANAC58 ====HOX2a_HOX2a                                            --------->ANAC58                      <-- ====HOX2a_HOX2a                                          <---------ALFIN1            <------NtERF2 --->ZmHOX2a(1)                <---------GLK1(1)        <---------ALFIN1 <----------DOF2          --- --At4g35610    --------->ANAC46                 <---------ETT(1)  <-----------GT1 <-----------HVH21   cttcaaaatcaacactctacgtctccaatctcgatttctccctcaccaattccgacatccacactctattctccactttcggcaaggtcgcgagagtcac  3232900                                      <---------ANAC58                                      <---------ANAC58                                      <---------ANAC46                                  <-----------HVH21                                 --------->bZIP60(1)                                 <---------O2                                 <---------ANAC58                                --------->ABI4(2)                                 <---------bZIP60(2)                             ------>NtERF2                                 <---------ANAC58                               <---------ANAC46                                 <---------bZIP60(1)                           --------->ATERF1(1)                                 <---------ANAC46                              <------NtERF2  ------>NtERF2                   --------->ANAC58 <---------ANAC46                          <---------RAP2.3(1)                   --------->ANAC58<------NtERF2                             <---------RRTF1(3)          ------>ZmHOX2a(2) <---------ANAC58   <----------DOF2               <---------DEAR3(1)         <------ZmHOX2a(2)  <---------O2  <---------ANAC58                   <---------RAP2.3(2)    <        --------->ARR11(3)  <---------ANAC58 --------->ZAT18                <---------------------WRI1        <---------ARR11(3)  --------->O2 <-------TEIL                    ---------->DOF2     --------    ---------->DOF2--------->ANAC46--------->ATERF1(1)                <------NtERF2          --------  <---------HSFB2a(2)   <---------ARR14(2)<---------ANAC58<---------ANAC46--------->DAG2     -------- -------ZAT14  <---------ALFIN1  <---------DEAR3(1)--------->ANAC46<---------LBD16<------NtERF2     < ------>ZAT14<---------ALFIN1   <------NtERF2<---------ZAT18 --------->REM1(2)<---------DEAR4(2)  ---   tgttctcaaagatcgccacactcgccaatctcgtggcgtcgcgttcgtgctctacgtctctcgtgaagacgcggctaaagcggcgcgttctatggacgcc  3233000                                                    <---------ANAC58                                                    <---------ANAC58                                                   <-------TEIL                                                  --------->ALFIN1                                                <---------ANAC58                                                <---------TGA1a                    --------->MYB52(1)          --------->TGA1a    <---------YAB1  ======================================MYC_MYB   --------->TOE2(3)------------>AtMYB77        <---------ANAC58 --------->GLK1(2) ----------->HVH21           ------->TEIL ---------ARR11(3) ----------->TGA1    --------->YAB1 ->ANAC58         <---------MYB52(2)--------->At4g35610 ->ANAC58        <---------At4g35610<---------At4g35610  <------NtERF2 ->ANAC46   --------->ETT(1)    ------>ZmHOX2a(2)<-------PIF5                                   ----- ---------GLK1(2)--------->At4g35610------>NtERF2------->PIF5                       --------->YAB1 -------->ARR10<---------ARR14(2)  --------->DEAR3(1)  <---------DEAR3(1)          ----------->GT1   aagattcttaatggtcggaaactgacggtttcgatcgccgctgataatggacgtgcgtcggagtttattaagaagagagtttacaaggataaatcgaggt  3233100  Previous    Next  AGI:  At3g10400.1    Description:  RNA recognition motif (RRM)-containing protein. similar to ATSC35 (ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA PROTEIN), RNA binding [Arabidopsis thaliana] (TAIR:AT5G64200.1); similar to ATSC35 (ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA PROTEIN), RNA binding [Arabidopsis thaliana] (TAIR:AT5G64200.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68868.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Ribonucleoprotein, BRUNO-like (InterPro:IPR015903); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); co Range:  from: 3232613    to: 3233690    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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