Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <------ZmHOX2a(2)    <-----------HVH21  --------->LBD16                                                           <---------ANAC55(2) <---------HSFB2a(2)                                                        --------->ANAC55(2) --------->HSFB2a(2)                                                      --------->CCA1(2) -----------------AGL1                                          --------->GLK1(2) --->MYC2                                                       --------->ARR11(3)    <---------AHL20(2) ----MYC2                                                ----------->GT1 --------->ARR14(2) --->MYC3                    <---------HSFB2a(2)        --------->DAG2   <---------ARR14(2)    ------ ----MYC3                    --------->HSFB2a(2)      ---------->DOF2  --------->ANAC46    <--------- ---ALFIN1      ---------->DOF2                   >>>>>>>>>TBF1 <---------ARR11(3)--------->MYB52(2)   gttcccgatcacgaagagaaaagctaaatctcgagaaaatggagaagacgaagaagaaaaggtaaaaatctatacgatacgcgtttgttttattctcctt  3228900                                                                                                    -                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                      <---------ANAC58           ----                                                  <----------DOF2     <---------ANAC58          <----                                                 <------------------------ANAC81                -----                   --------->HSFB2a(2)          ---------->ID1  <----------DOF2               -------  <---------ARR11(3)    <----------DOF2        <-----------GT1  <---------DAG2               -------- >ZmHOX2a(1)    <-----------GT1            <------------------------ANAC81            <-----------GT1 --GT1<<<<<<<<<TBF1<---------HSFB2a(2)*TSS<---------AHL20(2) <-----------GT1     <---------MYB52(1) <   ccaatttcttcttctaattttccagacttttcttctctctctatttttttttctttttctgttttactttttccttgttttctgttttttcccaaataat  3229000 --------->AHL20(2) <---------AHL20(2) -------->AHL20(2) -----ATHB1 ------AHL20(2)                            <---------AHL20(2) ----->AHL20(2)                           --------->AHL20(2)                    ===================== ------ICU4                               <---------AHL20(2)                    <----------DOF2 ----->ATHB51                    --------->ARR11(3)    ----------->GT1          ------>ZmHOX2a(1) -----YAB1                       <---------ARR11(3)   --------->DAG2     <---------ATHB12 ---->ICU4                    --------->DAG2       --------->ARR11(3)   ------>MYB83 -->YAB1 --------->TOE1(2)   ---------->DOF2   ---------->DOF2          ------>MYB46(1)     ========= ->AHL20(2)            --------->YAB1------------>CBF---------->DOF2  <---------MYB59 <<<<<<<<<TBF1 ---------AHL20(2)    <---------ATHB12 --------->WOX13(1)            --------->MYB46(3)     ------>ZmHOX2a(1)   aatttaaaaatcgtgggaaactaaatcatcaaaaagctcttcaattaaataaagataaagttaatccagtaaccaaacaatccttttcttcttcctcttc  3229100                                           <<<<<<<<<GATA-1                                 --------->ARR14(2)                              --------->ANAC58                            <---------ATERF1(1)                            ------>NtERF2  <<<<<<<<<GATA-4                           --------->DEAR3(1)           <---------ICU4                           ----------->HVH21--------->MYB46(3)                           <---------DEAR3(1)    --------->LBD16              <---------ZAT14<------NtERF2 <<<<<<<<<GATA-2     <---------ANAC58             ------>ZmHOX2a(1)<---------ANAC46 <---------LBD16 <---------ANAC58           ----------->RAV1(2)--------->ANAC58--------->MYB52(1) <---------MYB52(1)    ================HOX2a_HOX2a  <---------ARR14(2)     --------->YAB1                              -    <------ZmHOX2a(2)   <---------DEAR3(1) <<<<<<<<<GATA-3     <---------ANAC55(1)               ---- ==========HOX2a_HOX2a  --------->ANAC46  ------->TEIL --------->ICU4                         ------>ZmHOX2a(1) ==========HOX2a_HOX2a <---------LBD16    --------->ARR14(2)   <---------ANAC46------------>CBF <----   tcatcgatcactctcctgcagtttctacggcgacggaaacgatgaatccaccggataattatgttccgtctgtttctcactctcaattctctactcctcc  3229200           <---------At4g35610           --------->At4g35610                              ------>ZmHOX2a(2)  <---------ALFIN1                                   <---------ARR14(2)        --------->TOE2(3) ----->ZmHOX2a(1)    --------->AtMYB61               --------->ARR14(2)       --------->ZAT6 -->ZmHOX2a(1)      ------------>CBF           --------->ARR14(2)  ------------>CBF       <---------At4g35610 -----ALFIN1     --------->MYB46(3)            <---------ARR14(2) --------->TOE2(3)       --------->At4g35610   tcctccacagtcgagctcaaacaccaataccgaaacaagtttgaatccatttccgaattcgatctctacctcaatctctaaccctagttttgagcagatg  3229300                                                                                               ------                                                                                     <---------ARR11(3)                   --------->MYB52(1)                                                --------->ARR11(3)              ---------->DOF2                                                       <------MYB46(1)            --------->ANAC58                                                        <------MYB83            --------->ANAC58             --------->At4g35610                       <---------TOE2(2)           ----------->RAV1(1)   <---------HSFB2a(1)                               <---------TOE1(2)          --------->ANAC46       --------->HSFB2a(1)                             --------->TOE2(2)         --------->LBD16       <------ZmHOX2a(1)  <---------ARR11(3)             --------->TOE1(2)        --------->ANAC46  <------ZmHOX2a(1)<---------ZAT18             --------->ANAC46        ------       <---------LBD16--------->TOE1(2)  <---------At4g35610   <-----------GT1--------->MYB52(1)   gtctcattctccgcaccaaagaaacgaaggagaggacgttctcagcgctcaatgtcttcgcttaattcccttcccgtccctaacgtaggtcttcttcctg  3229400                                                                                                  <--                                                                                                  <--                        <---------GLK1(2)                                                   <--------          <---------ANAC55(2)                                                              ==========          <---------ANAC58           <--------P                                            --------->LBD16          <---------ANAC58         --------->LBD16                                        --------->TOE2(2)          <---------ANAC46        <---------HSFB2a(2)                                     <---------LBD16          --------->ANAC55(2)     --------->HSFB2a(2)      <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->TOE1(2)   --------->At5g28300 --------->At4g35610                <<<<<<<<<WRKY18                ----------->RAV1(2)  ----------->GT1      <---------At4g35610   <---------TOE1(3)   =================================HOX2a_HOX2a --------->ZAT6  --------->At4g35610<---------MYB52(1)    <---------WRKY12       ---------->DOF2 <--- --->LBD16<---------ANAC55(1)<<<<<<<<<TBF1   <---------TOE2(3)   <------ZmHOX2a(2)--------->DAG2 <--- >ZmHOX2a(1) <-----------HVH21   <---------LBD16   <---------AtMYB61        ----------->GT1------>ZmHOX2a(1)   gtaacagtaatttcgtgtcatcttcagcttcttcttccggtagatttaacgtagaggtcgtcaatggatcaaaccagactgtgaaaagttatcctgggat  3229500                                --------->MYB46(3)                    <---------ZAT2                               -------->P                             --------->At4g35610        <------ZmHOX2a(2)   --------->HSFC1(2)                        <---------At4g35610        <---------YAB1      --------->HSFB2a(1)                      ------>ZmHOX2a(1)        --------->ICU4      <---------HSFC1(2)                     <---------ANAC58       --------->ARR11(3)   --------->At4g35610                    <---------ANAC58       <---------ARR11(3)   <---------HSFB2a(1)           <---------ZAT14 <---------ARR14(2) ----MYB83                 --------->ANAC58               <---------ZAT2  <XXXXXXXXXXXXXXXXXXXXMIR2111A* ----MYB46(1)          --------->ANAC58                   --------->ZAT14 <---------GLK1(2) -TOE1(2)<---------ICU4--------->ANAC46       <---------ANAC58  --------->GLK1(1) ==============HOX2a_HOX2a --------->ANAC58   <---------ANAC58  <---------GLK1(1) ------AtMYB61<---------YAB1<---------At4g35610           --------->ZAT2  --------->ARR14(2) ------MYB46(3)        --------->ANAC58   <----------DOF2<-----------RAV1(1)            <------ZmHOX2a(1)   tggtgatgagatcattacgattaacaaggaagctaccactgaagctttgcttgctctcactgctgggtttcctgctgattcgcttaccgaggaagagatt  3229600                 <-----------RAV1(1)           ------>NtERF2          <---------PCF2                                                                           <-        <---------ANAC58                                                                 --------->ARR11(3)        <---------ANAC58                                                                <---------CCA1(2)       <---------AtMYB61                                                               --------->ARR11(3)       --------->ALFIN1                                    --------->MYB46(3)          --------->AHL20(1)      --------->ZAT14                             --------->ATHB12                     <---------ARR11(3)      <---------ZAT14                            <---------YAB1                        <---------AHL20(1)     --------->ALFIN1                     --------->AHL20(2)<---------ALFIN1    ----------->GT1   <--   <---------ANAC58                --------->ANAC58     <------ZmHOX2a(1)     <---------ANAC46    <--   <---------ANAC46                --------->ANAC58   --------->MYB59         <---------ANAC58   <---   <---------ANAC58      <------NtERF2 --------->WOX13(1)--------->ARR14(2)   <---------ANAC58   ----   gaattcggtgtggtgcctattgttggaggcattgaacaagtcaattacattttgattaggaaccacattatatccaaatggcgagaaaatatatctagtt  3229700                                                                      <---------ANAC58                                                                    <-----------GT1                                                                 <---------ICU4                                                                 --------->YAB1                                                                <---------YAB1           <---------ARR11(3)                           <-------TEIL<---------AHL20(2)    ---------->DOF2                                    --------->ARR14(1) ----------HVH21                                      --------->ARR14(2) ----MYB83 --------->ARR11(3)  ------>ZmHOX2a(1)      <---------ARR14(2) ----MYB46(1)                  <---------------AGL15  --------->ARR11(1)         ------->MYC3 ------MYB46(3)               --------->TOE2(3)       <---------GLK1(2)          <-------MYC3 ----->MYB59     --------->TOE2(3) <---------ICU4   ----------->ARR10 <---------ANAC58   gggtcacaaaggagatgtttcttaattcgattcctaaacattgtagtagtctcttagattcggcttataattacttggttacacatggatatatcaattt  3229800  Previous    Next  AGI:  At3g10380.1    Description:  SEC8 (secretion 8). Identical to Probable exocyst complex component 4 [Arabidopsis Thaliana] (GB:Q93YU5); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ82785.1); similar to unknown [Populus trichocarpa] (GB:ABK92599.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68901.1); contains InterPro domain Sec8 exocyst complex component specific domain; (InterPro:IPR007191) Range:  from: 3219528    to: 3228938    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10390.1    Description:  FLD (FLOWERING LOCUS D); amine oxidase. similar to LDL1 (LSD1-LIKE1), amine oxidase [Arabidopsis thaliana] (TAIR:AT1G62830.1); similar to LDL2 (LSD1-LIKE2), amine oxidase [Arabidopsis thaliana] (TAIR:AT3G13682.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68900.1); similar to B0103C08-B0602B01.13 [Oryza sativa (indica cultivar-group)] (GB:CAH68056.1); similar to hypothetical protein OsJ_015105 [Oryza sativa (japonica cultivar-group)] (GB:EAZ31622.1); contains InterPro domain SWIRM (InterPro:IPR007526); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Amine oxidase; (InterPro:IPR00 Range:  from: 3229298    to: 3231824    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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