Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------GLK1(2)         --------->ICU4         <---------YAB1    >>>>>>>GRF7                                              --------->WRKY12 <-----------HVH21                                      ---------->DOF2         ------->TEIL -------ANAC58               <---------GLK1(1)      --------->At4g35610  --------->AHL20(2) -------ANAC58            --------->YAB1            <---------At4g35610  <---------AHL20(2)  --------   tcttgtcaggcatgattctgaaacacaatcgaaatctgagattgctcaatttgcagatgaaagttgacttcataaaaaattgaatcttttgatcagttct  3172600                                                               --------->YAB1                                                            <---------ICU4                                                       <---------------------WRI1                                                      <------MYB46(1)                                                      <------MYB83                                                      <---------MYB46(3)                   <---------AHL20(1)                                     <------MYB46(1) <---------DEAR3(1)              ------>ZmHOX2a(2)                                     <------MYB83   <---------MYB52(1)              <------ZmHOX2a(2)                                    --------->MYB59<-------GAMYB                   <---------AGP1                 <---------------AGL15            <---------MYB46(3)               --------->AGP1  <-                 --------------->AGL15            --------->MYB52(2)               <---------ARR11(3)    --------->ANAC46          --------->YAB1    <---------MYB52(1)   --------->YAB1--------->ARR11(3)   --------->TOE2(3)  <---------ANAC46       --------->ZAT6--------->ICU4         <---------CCA1(2)<- ->ARR14(2)     ----------------->AGL2     <-----------GT1 <---------YAB1        ----------->ARR10 <-   tcataccctaaacccaaaaccatttcgagtaatcaaatttggtcttaacagttcgttggtgataattacaatgatataaaacttagatcttagtatattt  3172700              ----------->RAV1(1)             <----------ID1         --------->ANAC58                                                                         >>>         --------->ANAC58                          ---------->DOF2                             >>>>>> --------ANAC46                                <----------ID1                       <---------ARR14(2) --------ANAC58                          --------->ANAC58                           --------->ARR14(2) --------ANAC58    ---------->DOF2       --------->ANAC58                          <------ZmHOX2a(1)   ggcgagaagacaagaacaacaaaaagaccagaaattgaagagcaagaacgagacaaagatgaagatgagtaagagtaaacctgtaggaactggagaagaa  3172800                                                                  --------->GLK1(2)                        ----------->GT1           <----------DOF2 --------->ARR14(1)                   <---------MYB46(3)            <---------ANAC58<---------GLK1(2)                 <-------GAMYB             --------->DAG2        <---------ARR14(2)                 <---------ANAC58   ----------------->AGL3       --------->ARR11(3)     ----------->GT1    <---------ANAC46  ---------->DOF2        --------->ARR14(2)    >>>>>>>>>TBF1<---------ANAC58  --------->ANAC46       <-------GAMYB     --------->YAB1 >>>>>>>>>TBF1  <---------MYB46(3) --------->ANAC58      <---------ANAC46  <---------ATHB12      <--- >>>>>>TBF1  --------->TOE2(3)   <-----------GT1 <---------ANAC58<---------ARR11(3)---------->DOF2 >>>TBF1XXXXXXXXXXXXXXXXXXXX>MIR782--------->ANAC58   <----------DOF2    --------->WOX13(1) <--------   gaagaagaagaaaaaccttggttgttctgtgaatttcacccaaaaaaagttgctttctttcgttgaagattctctcaatcacgaagaaagatggagggcg  3172900                                 <--------ATHB1                                 --------->ATHB51                                 <---------ICU4                                 --------->ATHB12                                --------->ICU4                                                   ----                             ------------>ATHB5                                                  <---                         <---------ANAC46                                                        ----                     <---------ANAC58                                                           <----                     <---------ANAC58                                                           -----                    <------MYB46(1)                                                        ----------                    <---------MYB46(3)                                                   <---------ZAT14                    <------MYB83<---------ATHB51                       *TSS              --------->ZAT14 ---NtERF2         <---------AtMYB61                      <-----------GT1  <-----------RAV1(1)------- -DEAR3(1) --------->CCA1(2)<---------ANAC46   --------->AHL20(2)  --------->ALFIN1   <---------ANAC46   gaagtgaaacaagagatgggattggttgtgtcgaataattgaattacaaaaaaatgtttttttcaaaatgtgggcaaatgttggagtagtgtgtagtaat  3173000                      <---------REM1(1)                      --------->ALFIN1                     <-------MYC4                     ------->PIF5                     ------->MYC4                     ------->MYC2                     ------->MYC3                     <-------MYC3                     <-------PIF5                     <-------MYC2                    <---------TGA1a                    <---------O2                                       ------>NtERF2        <---------ANAC58                                              --------->ANAC46 ----->YAB1         --------->TGA1a             <---------YAB1        --------->ANAC58 ------ICU4         --------->O2              --------->AHL20(2)      --------->ANAC58 ---->HAHB4         <---------ANAC46          <---------AHL20(2)<------------CBF -----ATHB51       <---------TOE1(2)         --------->AHL20(2)--------->ATHB12 ---->ICU4        <---------ALFIN1           <---------AHL20(2)-------->ATHB1             --------->ANAC55(2) ->GT1<------ZmHOX2a(1)          ------------>CBF             <---------YAB1  ---------->DOF2------->TEIL -->YAB1<---------ANAC58  <---------At4g35610<---------AHL20(1)--------->ATHB51           <---------ANAC55(2)   aatggataggacttgtcttcccacgtgtagctcatgacaataaacaaattattttttaagaagtattattggacgccaaaaaaagagttgaaacgtatcg  3173100                                                                                    <---------AHL20(2)                                                       --------->ANAC58   <---------AHL20(2)                                                       --------->ANAC58   --------->AHL20(2)                   ---------->DOF2                     --------->ANAC46  --------->AHL20(2)         --------->ANAC58                         <---------MYB52(1)     <---------AHL20(2)      ----         --------->ANAC58                       ----------->GT1       --------->AHL20(2)    ---------       <---------AtLEC2                     --------->MYB46(3)       --------->AHL20(2)    <---------ATHB12   tttgtatttgcaagacaaacaaaaagaagttttctgagtagatttatcaaccgttacaagccttgttgaaaataaaaaaatttcatttattcaatgaatt  3173200                                        <---------ANAC46                                 <---------ANAC46                                 <---------ANAC58                         <-------GAMYB  <---------ANAC58                        <---------MYB46(3) <-------TEIL                 <---------WRKY18(1)    <---------ANAC58                --------->WRKY12<-------TEIL--------->YAB1                              <---------AHL20(2)                --------->WRKY38(1)----------->HVH21                                --------->ICU4                ----------->HVH21--------->ANAC55(2)                 <------ZmHOX2a(1)  --------->AHL20(2)               <---------WOX13(1)<---------ANAC55(2)          <---------MYB46(3)    <---------YAB1    --------->ZAT6     <--------P<---------ANAC58         <---------TOE2(3)     --------->ARR11(3) ------>DOF2<---------YAB1   <---------ANAC58          <----------DOF2         --------->YAB1<------- >AHL20(2)  <---------TOE2(3)<---------ANAC58    --------->ZAT6   <---------LBD16 --------->YAB1    <   aaagtcacactaatatggttgactggttgttacatgcgtgatgcgttcataacactgctttaggttgttcaggaagaacaaaaatcatgtttaattcact  3173300            ----------->GT1         ------>MYB83       <---------MYB59       <---------MYB111(1)     -------->P     ------>MYB46(1)     ------>MYB83    --------->MYB55(1)   <---------MYB59   <---------MYB111(1)                                           --------->WOX13(1)         ---------   <---------MYB46(2)                 <------ZmHOX2a(2)       --------->TOE2(3)             <--------   <---------MYB111(2)          -------->HAHB4        ----------->GT1                      --------->YAB1 ----GT1 ------>MYB46(1)       --------->ICU4     ------>ZmHOX2a(2)            --------->TOE2(3) <--- -----------GT1          ----------->GT1         <------ZmHOX2a(2)       --------->TOE2(3) --------->AHL20(2)   atatacctaccaaatcgaaaaataaacttgttaattatcgatcactctgcgatcgctagtaaaacatcagtcaaaacttaacctcgaatacaattaaaat  3173400                          --------->ZAT14                      --------->ATHB12                      <---------ICU4                  <---------RVE1(1)                         --------->TOE2(3)                 --------->ARR14(3)                        --------->ATHB12                 <---------ARR11(3)                        <--------HAHB4                 <---------ARR14(3)                        --------->YAB1                      <-----                 --------->ARR11(3)                        <---------ICU4          <---------AtLEC2                 --------->ARR14(2)           <---------At4g35610                  --------->YAB1      ------->GAMYB  <-------TEIL<---------ICU4           <---------YAB1         --------->ANAC58 >AHL20(2)       <---------ARR14(2) <-----------GT1       --------->ICU4         --------->ANAC58 -AHL20(2)     ----------->ARR10 --------->YAB1           <---------ATHB12 <-----------HVH21<-------- ------ICU4<------NtERF2  <---------ZAT18     --------->At4g35610    <-----------GT1   <---------ARR11(3)   caatacaacaggcagagaagatattcattgcacaatagttaccttctcatcttccttctaatcattagttttaacttcgtcgcatgcatgattttcagga  3173500  Previous    Next  AGI:  At3g10260.1    Description:  reticulon family protein. similar to reticulon family protein (RTNLB6) [Arabidopsis thaliana] (TAIR:AT3G61560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69968.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 3171227    to: 3172971    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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