Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      ------>MYB83                                                                                  --------->AtMYB61                                                                                 --------->MYB46(3)                                                                               --------->AtMYB61                                                          --------->ANAC58     <---------ALFIN1                                                 --------->ZAT2               --------->MYB46(3)                                                 ----------->RAV1(2)        <---------ALFIN1                       --------->MYB52(1)        <---------At4g35610        --------->AtMYB61                     <---------MYB52(2)          --------->At4g35610 --------->ZAT2 ------>MYB46(1)            <------ZmHOX2a(2)       <---------ZAT2        --------->ANAC58 --------->MYB46(3)          <------ZmHOX2a(1)         <---------At4g35610  <---------LBD16 <---------PCF5    ===============HOX2a_HOX2a      --------->ZAT2<----------CDC5    --------->At4g35610            -    <------ZmHOX2a(1)--------->MYB46(3)          <---------ZAT2      <---------ZAT2----------->RAV1(1) ------>At4g35610 <----------ID1    --------->At4g35610 <---------ALFIN1 <------ZmHOX2a(1)      <----   agcttaggagaaggatcaatggaacaaacagagagtccagcttcagaaacctgctgagccacggctaaaccagcaggaccaccaccaacaatagccaaat  3165600                                                                                ---------->DOF2                                 <---------At4g35610                      <------ZmHOX2a(2)                                 --------->At4g35610 ============================HOX2a_HOX2a                          ---------->DOF2        <-----------GT1          --------->CCA1(2)                      <---------SPL7           --------->GLK1(2)         <---------ARR11(3)                     <---------ANAC58         <---------ARR14(2)         <---------ARR14(2)                     ----------->GT1          <---------ARR11(3)         --------->AGP1                     <---------ANAC46         --------->ARR14(2)         --------->ARR14(2)     <----                     <---------ANAC58         <---------GLK1(2)   <------ZmHOX2a(1)   --------->At4g35610                 <---------HSFC1(2)         --------->ICU4        ===============HOX2a_HOX2a--------- -------->MYB46(3)--------->ALFIN1          ----------->ARR10  <---------LBD16---------->DOF2-------- -----ATHB12     --------->HSFC1(2)  ---------->DOF2 ------>ZmHOX2a(1)   --------->ARR11(3)-------->P   caacaacttgactcttggaagtgtcgtacaaaggaagctcaaagtcaagattctccttcttagtttcaggaacaagatccaaaagagcagcgctaccact  3165700 <---------ZAT14                        --------->ANAC58 <---------ZAT18                        --------->ANAC58 --------->ZAT14          <---------DAG2------>MYB83 -----ATHB12              <----------DOF2  <---------MYB59 >MYB46(3)       <---------YAB1         ------>MYB46(1)             <-----------GT1               --- ->ZAT6        --------->YAB1      --------->ANAC46              <---------MYB46(3)           -------   cactacactagagacaattttgatagcccttttcttcacaccaagcctaacccttgaatggtatggattgttactgcataatctctcaaacccatgaaac  3165800                        <------MYB83                        <---------ANAC46                        <---------ANAC58                                             <---------AHL20(2)                        <---------ANAC58                                             <---------YAB1                        <------MYB46(1)                 --------->LBD16            --------->CCA1(2)                       --------->MYB55(2)         <---------GLK1(1)              <------ZmHOX2a(1) <-                  <----------DOF2        --------->GLK1(2)                      ----------->GT1    --    ----------->GT1    <---------MYB46(3)--------->ARR14(2)                  ---------->DOF2      --- ------>MYB52(1) <---------ANAC58        <---------ARR14(2)                --------->AtMYB61     <--- >TEIL           <---------ANAC58   ------->GAMYB --------->ARR14(2)    <----------ID1        -------   tgagggatgaaaaaatcgagcttgttgggtgttttcaacagagtatccatcgaattcccccaaaatcgaagaaaacaccaaaaggatataattcaaaaat  3165900      --------->ANAC58      --------->ANAC58   <---------ARR14(2)   --------->ARR14(2) ----------->HVH21 --------->LBD16 --------LBD16                                                                                     <- ------->At4g35610                                        --------->ICU4               ---------->DOF2 ------>MYB52(1)                                        ---------->DOF2              <---------HSFB2a(2) --------GT1                                     <---------ANAC58                 -------->P      <-- -->YAB1       -------->P ----------->GT1        <---------ANAC58         --------->ANAC46      -----   caccggacacgatttctaaccagagggattgagaaaatggaatactaaattgctagagaaaagatgaacgaagaccacaaaacttacccagaagcagtag  3166000                              --------->LBD16                             --------------->AGL15                             <---------------AGL15                             <---------HSFB2a(2)                             --------->HSFB2a(2)                                             <-------                            ----------------->AGL3                                           <-------                            ----------------->AGL1                                           <-------                   <---------ARR11(3)                                                      <---------ZAT18 ------TEIL        <-----------GT1         *TSS                 ------->TEIL          <---------MYB52(1) --------DOF2      --------->ARR11(3)     ---------->DOF2    <---------YAB1          <----------DOF2 ---->At4g35610   --------->YAB1---------->DOF2    <------------CBF                  ------>ZmHOX2a(1)   cttcatggagatggagacaattatcttcttcccagaaagagagagaaagagagaattgagtctatgaatgtgtttgtggtatgagtcctttagtggggtc  3166100                                   <---------ARR11(3)                                 <---------YAB1                               <---------ICU4                               --------->YAB1                           <---------YAB1                           --------->ICU4                         <--------HAHB4                         --------->YAB1                                                      <-------                         --------->ATHB51                                                    --------                         <---------ICU4                                                      --------                        <---------YAB1                                                       --------                  --------->GLK1(1)--------->ARR11(3)                                     <---------SPL7             <---------ZAT14  --------->ICU4                                             <---------ANAC58    ------------>CBF    --------->ICU4<----------DOF2                              --------->ZAT6 --ANAC58    --------->ZAT14  <---------YAB1                  --------->ICU4     --------->YAB1 --PCF2      --------->ZAT18<---------ICU4         <<<<<<<<<<<<<<<<<LFY     --------->MYB46(3) --ANAC58    <---------ZAT18--------->YAB1        ----------->HVH21    --------->YAB1    <---------ANAC58   tctcttcccaatatgtgcacaaatccattattattattatcttttggtttttgtgacattggtcattagtcactcataaccactaatactagcttacgca  3166200                                                                 <---------DAG2                                                         ----------->GT1          <-------GAMYB                                <---------YAB1        <--------P       --------->YAB1     <---------ATHB12     <----------DOF2       <------------- --ANAC55(2)        <---------YAB1 <---------ARR14(2)  --------->ICU4                  -------------- ->ANAC58----------->GT1<-------TEIL--------->GLK1(1)--------->ATHB12            <-----------GT1 ->ANAC58<---------MYB46(3)        --------->ARR14(2)<--------HAHB4 <------------------------ANAC81 ->ANAC55(2) <---------AHL20(2)    <---------GLK1(2)<------ZmHOX2a(2)         <-----------GT1 -------   ttaatacatggttgttaaatttctgattcattatccagatttcgaaatcaatggatcattagtaaaactttttttttttttttctacttctcaaatttgt  3166300                                                                  <---------YAB1                                                                -------->HAHB4                                                                --------->ATHB12                                                     <---------AHL20(1)                                                     <---------AHL20(2)                                                     --------->AHL20(2)                                                     --------->AHL20(1)                                                    --------->YAB1<---------WOX13(1)                                             <------MYB46(1)    <---------ICU4                                        <---------AHL20(2)      --------->YAB1                                        --------->AHL20(2)     <---------YAB1                                        --------->ATHB51       <---------ATHB12                                       <---------AHL20(2)      --------->ICU4                              ----------->GT1----------->GT1  <---------TOE2(3)                     <       <---------YAB1        --------->DAG2  <------MYB83    --------->YAB1                        <- --------->AHL20(2)         ---------->DOF2 --------->MYB59<---------AHL20(2)                  <----- --AGL15                 ----------->GT1--------->ATHB12   --------->AHL20(2)                  ------ ->AGL15            <---------YAB1  <---------AHL20(2)    --------->YAB1     <---------YAB1    <----- ---->GT1         --------->CCA1(2) --------->AHL20(2)<---------YAB1--------->YAB1<---------AHL20(2)-   aaaaaaaatatgcttataagttatgagaagtaaagtaaaaaattatttggtaaattataattttaatgattaataagttatgttttaaatgttatatttt  3166400          --------->ANAC58          --------->ANAC58    <---------YAB1        ---------->DOF2  --------->GLK1(2)     <-----------GT1     <---------ARR11(3) ---------AHL20(2)       --------->ARR11(3)                               ----------->GT1 --------AHL20(2)    --------->YAB1                                --------->AHL20(2)   <---------HSFB2a(1) ----AHL20(2)    --------->AHL20(2)          <-----------GT1  ------------>CBF          --------->HSFB2a(1) --->AHL20(2)   --------->AHL20(2)      <------MYB46(1)     <---------ARR14(2)  <------------CBF----- ----AHL20(1)   <---------AHL20(2) --------->ATHB12    ----------->GT1<---------AHL20(2)<---------HSFC1(2) -------->AHL20(2)  --------->AHL20(2)  <------MYB83 <------------CBF--------->AHL20(2) --------->HSFC1(2)   atttatttaacaaagcaaataaataaaaatctatgaatgatttggtttatcgctacattgtgaatccaatataaaatcgttatattgcgaagtttctata  3166500  Previous    Next  AGI:  At3g10230.1    Description:  LYC (LYCOPENE CYCLASE); lycopene beta cyclase. Identical to Lycopene beta cyclase, chloroplast precursor (LCY1) [Arabidopsis Thaliana] (GB:Q38933;GB:Q39145); similar to LUT2 (LUTEIN DEFICIENT 2), lycopene epsilon cyclase [Arabidopsis thaliana] (TAIR:AT5G57030.1); similar to lycopene beta-cyclase allozyme 2 [Citrus sinensis] (GB:ABF69942.1); similar to lycopene-beta-cyclase [Citrus maxima] (GB:AAR89632.1); similar to lycopene beta-cyclase [Carica papaya] (GB:ABD91578.1); contains InterPro domain Lycopene beta and epsilon cyclase; (InterPro:IPR008671); contains InterPro domain Lycopene cyclase, beta and epsilon; (InterPro:IPR010108) Range:  from: 3164080    to: 3166043    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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