Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            -----------                                                                                          <---------LBD16                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                                      <-----------HVH21                                                                                     --------->LBD16                                                                                   <---------LBD16                                                                                 --------->GLK1(2)                                                                                 --------->ARR14(2)                                                                                 <---------ARR14(2)                                                                                <---------HSFB2a(1)                                                                                --------->GLK1(1)                                                                                <---------GLK1(1) ---                                                      --------->LBD16       ----------->GT1     <----                                                     <---------LBD16        --------->LBD16   -------         <---------AHL20(2)                   --------->ATHB12             <---------ANAC46 ---------         --------->AHL20(2)                ----------->GT1     <----------DOF2 ---------->TaMYB80 --- ---------GT1<---------ICU4      --------->YAB1     <---------LBD16       <---------LBD16--------->MYB52(1)   tcacagtatttttaattaagacacatttcaactaataagaagagagagtgattaccagggaaatactttccgacgatgcggaaaatccggttaccggacc  3161400                                              --------->ARR11(3)                                              <---------ARR11(3)                                             <---------GLK1(1)                                             --------->GLK1(1)   --------->ANAC46                   ===========================HOX2a_HOX2a   --------->ANAC58                  <---------ARR11(3)   --------->ANAC58             <------ZmHOX2a(2) ---->AtSPL3                    =================================HOX2a_HOX2a           <---------ANAC58 --->MYB46(1)                  <---------ARR11(3)                                      <---------ANAC58 -----MYB59         --------->ARR11(3)<------ZmHOX2a(2)                    <---------ICU4           < >TEIL          ---------->DOF2<---------ARR14(2)                         <---------ATHB12          < >LBD16<---------LBD16         --------->ARR11(3)         ------>ZmHOX2a(1)--------->YAB1          -- --->MYB83   ----------->GT1   --------->ARR14(2)    <---------At4g35610--------->WOX13(1)         --   tatccaagccctggagagtaaagaactggagaagatcgagatcagagaaatcttcatctcctaagtattggggacaatcatgccagttttcttgttcatc  3161500                                                                                               ------                                                                                           ----------                                                                                          --------->KAN4(2)                                                                                         <---------KAN4(1)                                                             --------->MYB52(1)          <---------HSFB2a(1)                                                            --------->AtMYB61            --------->HSFC1(2)                                                      --------->ANAC46                   --------->KAN4(1)                                                    ----------->RAV1(1)                  --------->HSFB2a(1)                                                --------->ANAC58     <---------ARR11(3)  <---------HSFC1(2)                                              --------->At4g35610    --------->ARR11(3)  <----------TaMYB80        <----------DOF2                    <------ZmHOX2a(2)------->GAMYB               <---------KAN4(2) --------->TGA2(2)                        <---------ARR11(3)<---------ALFIN1         --------->LBD16 -----------TGA1                          <---------AGP1   <---------MYB55(2)      <---------LBD16 -----------HVH21             <-----------HVH21 --------->ANAC58     --------->GLK1(2)  ---------->TaMYB80 ------->ANAC46      <---------HSFC1(2)--------->HSFB2a(2) --------->MYB46(3)   ----------->HVH21 --- ------->bZIP60(2)   --------->HSFC1(2)------>ZmHOX2a(1)   <---------MYB52(2)  <-----------HVH21 <---   aacgtcatcgcttctcgtcaagaagggtctagcgtcaattcctagatcagaagccaacacaaccaccgaaaaatcttcagccatcaccggaatattcctc  3161600                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --              <---------ANAC58                                                                     <-              <---------TGA1a                                                                      --              <---------ANAC58                                                                     <-              --------->TGA1a                                                                      --              ==================bZIP_DOF                                                           <-       <---------ARR14(2)                                                                         ---       --------->ARR14(2)                                                                         ---       <---------GLK1(2)                                                                          <--    --------->ANAC58                                                   <---------ZAT14            <--    --------->ANAC58                                           --------->LBD16                    ---    --------->ANAC55(2)                                       <---------ANAC58                    ---    <---------ANAC55(2)                                       <---------ANAC58                    ===   <---------LBD16   ------>ZmHOX2a(1)                        <---------ANAC46                  <----  --------->MYB52(1) <----------DOF2                         <---------LBD16         --------->TOE1(2) ------>ZmHOX2a(1)   <---------DAG2                        --------->TOE2(2)         --------->TOE2(2) ----------->HVH21 *TSS                                    --------->TOE1(2)        <---------ANAC58 >ZmHOX2a(1)  --------->O2                                ----------->RAV1(2)       <---------ANAC58 ------------->TaNAC69(2)                                -------->P    --------->ZAT18         <----- --->ZmHOX2a(1)   ---------->ID1                    <-----------GT1    --------->ZAT14--------->ALFIN1 ------ALFIN1 <---------O2                    <------ZmHOX2a(1)<---------MYB46(3) <-----------GT1----   ctcctcacggattctctcgtgtcctttttgtttagaccagggattagaggatttatactaacctgcgggtgagtacacagtgtttaacgtgcgactatac  3161700   <---------MYB59 ------->TEIL ----->MYC2 ------MYC4 ------PIF5 ----->MYC4 ----->PIF5 ------MYC2 ----->MYC3 ------PIF4 ----->PIF4 ------MYC3 ------>O2                                                                                          < ------>TGA1a                                                                                       < -------O2 --------->MYB52(1)                                                                  <----- -------TGA1a                                                                                 <------ ------>ANAC46                                                *TSS                   <-------TEIL  -- ------>ANAC55(2)                 --------->ZAT6             <-----------GT1      --------->At4g35610 =====================================bZIP_DOF              <---------AHL20(2)    --------->ZAT2   <- --------OsbHLH66          <----------DOF2                 <---------YAB1         <---------At4g35610 ----REM1(2)              <---------DAG2                --------->AHL20(2)        <---------ZAT2  --- -------->OsbHLH66     <-----------GT1           --------->ANAC46          <---------CCA1(2)  -------   acgtgcctaaatctaacgagtctaatgaccttttgaacactagagaaaactacgtcgttttattaatcgtctctctcgtttctcagctacattctcagcg  3161800                    <-------TEIL            --------->LBD16          ------>ZmHOX2a(2)          <---------LBD16         <------ZmHOX2a(2)        <---------ARR14(2)                                                                         <-        --------->ARR14(2)                                                                         <-   <---------ARR14(2)             --------->At4g35610                                        <-------   --------->ARR14(2)             <---------At4g35610                                       --------- ---------ANAC58   --------->GLK1(2)                                                        --------- ---------ANAC58   --------->ARR14(1)                                                       <-------- ----DEAR3(1)      --------->CCA1(2)                                                        --------- ---At4g35610     <---------GLK1(2)      --------->ANAC58                                  --------->ANAC58 ------->ABI4(2)  --------->ARR14(2)     --------->ANAC58                                  --------->ANAC58 ------TEIL--------->TOE1(2) <---------GLK1(1)                                             ---------- ------>ALFIN1    <---------ARR14(2)----------->HVH21   ----------------->AGL2           <-----------GT1 -->At4g35610   ----------->ARR10 --------->ZAT2   <----------DOF2                 <----------DOF2 --   gtgcgtctccgatccggcgagattcgattcgatttctgctgacaagtcaaactctttgcccagaaatagctaagaaggtaagcgtcttttgttacccaat  3161900  ---------->DOF2 --------HSFC1(1) --------HSFB2a(2) --------AGL15 -------->AGL2                                                   --------->HSFB2a(2) -------->AG                                       <---------DAG2<---------HSFB2a(2) -MYB59                            --------->ANAC55(2)        --------->AGP1 -------->AGL1                <---------TOE2(3)    <----------DOF2   ----------->GT1 ------->AGL1<---------AHL20(2)    <---------ANAC55(2)   <-----------HVH21 ------->HSFB2a(2)       --------->ATHB12  <-----------GT1  >>>>>>>GRF7----------->GT1    <---------ANAC46   tcgagaaagtcgaatttttttttgatttcattgagataagtgatttaacagagcttttttgtcaggtctagaggtgaaaaaatggcaacttcgcgtttac  3162000                                                ---------->DOF2                                                ============================================bZIP_DOF                                            --------->TOE2(3)          <XXXXXXXXXXXXXXXXXXXXXMIR173                                          ------>MYB83          --------->ANAC58                                          ==================================================MYC_MYB                                          -------->P<---------GLK1(2) <---------CCA1(2)                                         ------>NtERF2          --------->ANAC58                                        --------->DEAR3(1)     --------->SPL7                                     --------->ANAC46         ------>NtERF2               --------------->AtSPL8--------->ANAC58      --------->At4g35610    --------->TGA1a        <---------At4g35610          --------->ANAC58      <---------LBD16     --------->LBD16        --------->At4g35610 --------->ANAC46--------->TOE1(3)<---------SPL7  <---------LBD16      <------ZmHOX2a(1)   <---------ALFIN1------>MYB46(1)  <---------At4g35610--------->ANAC46  <----   agttggaaggagatgactctgtacatctacacattactcacgccaaccttaaaagcttctctgcggacgctcgtttctctccgcaagtgagtctcgtttt  3162100                                                                                             --------                                                                                           ----------                                                                                       --------->ZAT2                                                                                       --------->At4g35610                                           ---------->DOF2                       <---------ZAT14    -                                 <---------ZAT6                                  --------->ZAT14    -        --------->ICU4       --------->ZAT14                                  <---------ANAC46    --- -------GT1                  <---------ZAT14     <----------DOF2      <---------ANAC46--------->GLK1(2)   acattcagtactgattccaactgtttttcaatgtagtgctatctataaaggcttttttgtttgaattttgttctgtagatgagtgtagaagctgtgaaag  3162200                           <---------MYB52(1)                                                 <------ -->DOF2             --------->REM1(1)               --------->YAB1                           ------- ->HVH21            <-------TEIL                    <---------YAB1                         <---------YAB1 -------->ANAC58 ----------->GT1        <----------DOF2                                 <---------YAB1 -------->ANAC58--------->ALFIN1       <---------ANAC58                                 --------->ICU4 ------->DOF2   <---------------AtSPL8 <---------ANAC58<---------YAB1<---------TOE2(3)--------->YAB1   aaaagctatggaagaaatgtggtacatctgttaattccatggctttagagctctatgatgactctggctcaaaggttgcagttctcagtgatgattctag  3162300  Previous    Next  AGI:  At3g10210.1    Description:  similar to Rho-GTPase-activating protein-related [Arabidopsis thaliana] (TAIR:AT4G35750.1); similar to unknown [Populus trichocarpa] (GB:ABK94010.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251) Range:  from: 3160242    to: 3161619    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10220.1    Description:  tubulin folding cofactor B. similar to unknown [Populus trichocarpa] (GB:ABK93610.1); contains InterPro domain Cytoskeleton-associated protein, CAP-Gly (InterPro:IPR000938) Range:  from: 3161762    to: 3164236    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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