Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->DAG2         <------NtERF2                                                          ------->GAMYB        --------->LBD16                                                  --------->ANAC58       <---------LBD16                                                   --------->ANAC58       <---------ANAC46                              --------->ANAC58   --------->SPL7      <---------LBD16                                --------->ANAC58  --------->ARR14(2)  ---------->DOF2                                   <---------LBD16   <------NtERF2             <---- --------->DOF2                                  <------ZmHOX2a(1)   --------->LBD16          <------ ----------->AGL15                         <------ZmHOX2a(1)        --------->RAP2.6(2) <---------ALFIN1 ------------>AGL1  --------->DAG2    --------->ALFIN1             <---------LBD16    --------->SPL7 --RAV1(1)  ---------->DOF2           <---------REM1(1)     <---------LBD16    --------->MYB46(3)   ccaaaagagccgggaaaagcagaaggcgaatgttgagaaggtgtaggagaaggactcggaattggggaagccggaacgccaatcgccataccacctcttt  3106400                                               <------ZmHOX2a(1)                                             <---------------------WRI1                                        ----------->HVH21                                       <------NtERF2                                      <---------At4g35610                                     <---------ANAC46                     <------ZmHOX2a(1)              ---------->DOF2       <------NtERF2                   <---------At4g35610           ----------->GT1         <---------ATERF1(1)              --------->At4g35610           <--  --------->ZAT18                 <---------DEAR3(1)             ---------->DOF2               ------  <---------ZAT18                 --------->ALFIN1             <------NtERF2                 <------- -------RAV1(1)                  <---------ANAC58             ------>NtERF2                 <------ZmHOX2a(1) ----DOF2  <---------ANAC55(2)   <---------ANAC58            <----------ID1         <---------ZAT6<--   gttgcccactaataggtaaagacgaagacgaagaggctggcgctgatgaggaagataacaatggcgacgaagcggaggagaagtgagtgtaagaggagtg  3106500                                   <---------SPL7                                ------>NtERF2                               ------>NtERF2                               <---------ATERF1(1)                           <------NtERF2                              <---------RAP2.6(2)                           --------->LBD16                              <---------RAP2.3(2)                          --------->DEAR3(1)                              --------->ATERF1(2)                         <---------LBD16                              <---------DEAR3(1)                          <------NtERF2                              <---------ATERF1(2)                        <---------ATERF1(1)                             --------->ATERF1(1)                         ------>NtERF2                            <---------RAP2.3(1)                        --------->ATERF1(1)   <-------                            <---------ATERF1(1)                       <-----------HVH21 ----------->HVH21                           --------->ALFIN1                          <---------ANAC58   <---------SPL7                           <---------DEAR3(1)                        <---------ANAC46  --------->MYB46(3)                          --------->ATERF1(1)                        <---------ANAC58 ----------->RAV1(2)                         --------->LBD16                          <---------MYB52(1)  <---------At4g35610                        <---------ANAC46                         <-------GAMYB        --------->At4g35610                       --------->At4g35610                      <-----------RAV1(1)   <---------LBD16                       <---------At4g35610                      <---------MYB46(3)  <-----------GT1                       <---------LBD16                        --------->At4g35610  ----------->HVH21                    ----------->RAV1(2) ---------->DOF2       <---------At4g35610 <-----------HVH21                  --------->ANAC58 <---------RAP2.6(3)      <---------RAP2.6(2)  <---------bZIP60(1) -------REM1(1)   --------->ANAC58--------->RAP2.6(2)      <---------At4g35610   --------->bZIP60(1) --->ALFIN1      --------->ZAT18<------NtERF2          <-----------RAV1(1)--------->ATERF1(1)<------- --ANAC46      <---------SPL7<------NtERF2             <---------REM1(1)--------->DEAR3(1)   <------- -------MYB46(3) --------->SPL7<---------RAP2.3(1)    --------->ARR11(3)<---------DEAR3(1)--------->SPL7   ttgttgccatggtctagagtacgcctgcggaggcggccgtactaaaggctgggagagatgttgctgctgttgcgtcgccggagatgtcaccggacgcgtg  3106600                                                                                                    <                                             <---------LBD16                               <---------HSFB2a(2)                                            --------->ALFIN1                               --------->HSFB2a(2)                                          --------->At4g35610                             <---------LBD16       <------ZmHOX2a(1)                  <---------At4g35610                          --------->GLK1(1)    <------ZmHOX2a(1)                     <---------ZAT2                    --------->ALFIN1      <--  <---------TOE2(3)                       --------->ZAT2                   <------ZmHOX2a(1)      <-- --ANAC58                        <---------MYB46(3)                    ------->GAMYB   <---------GLK1(1) --ANAC58   <---------TOE1(3)   <---------YAB1                      --------->MYB52(1)--------->ARR14(2) --ANAC46   <---------TOE2(3)<---------AtMYB61                 <------ZmHOX2a(1)      <---------ARR14(2)   tattgaggaggattagggtttggattgagcgatggtgattgtggagctggggaagagggaatagaggaaacaacggaggagggactcggatttgtggaag  3106700                                                                          <-----------HVH21                                                                        --------->ATERF1(1)                                                                        --------->RAP2.3(1)                                                                       <---------ATERF1(1)                                                                       ------>NtERF2                                                                      --------->DEAR3(1)                                                                <---------ANAC46                                                               <------NtERF2                                                               <---------At4g35610                                                               --------->At4g35610                                                              <---------MYB46(3)        ------->TEIL                                          ------>NtERF2<------NtERF2   <---------ANAC46                              <---------AtMYB61    --------->ANAC58   <-------GAMYB                          <---------ZAT2      --------->MYB55(2)        --------->ALFIN1  <---------MYB46(3)                      <---------At4g35610--------->ALFIN1         <---------bZIP60(2)  --------->MYB52(2)                      --------->At4g35610<---------DEAR3(1)       <---------O2  --------->MYB55(2)                     ------>NtERF2      <---------MYB52(1)   <----------DOF2  <------MYB83                          <---------DEAR3(1) --------->LBD16------>NtERF2--------->LBD16  <------MYB46(1)                    ----------->HVH21   <---------LBD16<------NtERF2 <---------ANAC58 <---------AtMYB61                <---------ARR14(2)   <---------ARR14(2)--------->DEAR3(1)        -- ---------MYB52(1)                --------->ARR14(2)   --------->ARR14(2)<---------ANAC46       ----- -------ANAC58            <---------MYB46(3)    <------ZmHOX2a(1)  ----------->HVH21  <---------ANAC46 -------ANAC58   ---------->DOF2  --------->GLK1(2) --------->ALFIN1  --------->ANAC58<---------ANAC58   gcgttggttgaatctgtgttaaagtcgatggtttcgaatccgacggctgaggaggtgtttccggtggctgagacgccgtcgagctttgccgtggctgatc  3106800                                                                              ----------->GT1                                                                             --------->ANAC58                                                                             --------->ANAC58                                        <---------ANAC46                  <---------SPL7                                     <---------WOX13(1)                  <---------DEAR3(2)                                    <------------CBF                    <---------------AtSPL3     --          <---------YAB1          <---------YAB1                        <---------At1g77200        <-    --------->DAG2            <---------ARR11(3)                        --------->ETT(1)    ---------  ---------->DOF2   *TSS      --------->ARR11(3)                   <------------CBF         --------- ------->AtLEC2    <---------ANAC46--------->ATHB12       <---------AHL20(2)--------->SPL1(2) ------- ->ZmHOX2a(2)   --------->ALFIN1<------------CBF          --------->AHL20(2)--------->SPL7  <--------   catgaaaaggttgtgaatgtggagggaatagagatattgattgagtatatagaaatctaattaaaccgaaattgtcggtacggtattaaacaagtgaacc  3106900                            <---------SPL7                            ----------->HVH21                          <---------LBD16                         --------->MYB52(1)                        <-----------GT1                  --------->ATHB51                  <--------HAHB4                  <---------AHL20(2)                  --------->YAB1                  -------->ATHB1                  -------->HAHB4                  <---------ICU4                            <---------ANAC58     ---------->DOF2<---------YAB1                          <---------ANAC58 ------->ARR14(2)<---------YAB1        <-----------GT1      <---------ANAC46 --------ARR14(2)<---------ATHB51   <----------DOF2       <---------ANAC46 >ZAT14          --------->ICU4--------->DEAR3(2)        <---------MYB52(1) >ZAT18        --------->YAB1 --------->ARR14(2)        <-------GAMYB                  ---------->DOF2 >TEIL         <--------HAHB4 --------->SPL7           <-----------RAV1(1)          ------->GAMYB -ZAT14        <---------ICU4 <---------ARR14(2)<----------DOF2----------->GT1   <-----------GT1   gaaactgcaaagctcgataattattaataccggaccggctttaacaattccttttctctgttgtgtgattaaaacgatgagtttaaccccaaagaataaa  3107000                                                               <---------ANAC58                                                               <---------ANAC58                                                              --------->At4g35610             <------NtERF2                                    <---------At4g35610         --------->ANAC58                                    ------->TEIL         --------->ANAC58                                 <---------REM1(1)         --------->ANAC46                           --------->HSFB2a(2)     ---------->DOF2                                <---------HSFB2a(2)  ----------->GT1                                  <---------ANAC58 ----------->GT1        <---------YAB1             <---------ANAC46                ---------->DOF2 <---------ZAT6       <---------ICU4               <---------ANAC58            <---------ZAT6   <----   tgagagttaaaacgcagcgtttcattatgctcagatagcaagtttcttctattgctggaaatgtagcttccaagttaactagtgtcaaagtctctggtct  3107100                                             --------->ANAC58                                             --------->ANAC46           <----------DOF2                                         <-----------HVH21           ------>NtERF2             <-----                           <------ZmHOX2a(2) --------->ANAC58     --------->At4g35610          ------                  --------->ZAT18       <---------ZAT6            <---------At4g35610          ------                  <---------ZAT14  --------->STY1(2)      <---------ARR14(2)            ---------->DOF2 ------DOF2       --------->ZAT14  <---------STY1(2)      --------->ARR14(2)       ---------->DOF2   ttttctcacatactcaagagtacacagcgatcaaattagctagtgtcacgacaaattggagatttgtttgcagcctttagagccttatagcaaagaagaa  3107200                                                                      --------->ICU4                                                              --------->bZIP60(1)                                                              <---------ANAC46                                                              <---------ANAC58                                                              <---------bZIP60(2)             <------                                                              <---------bZIP60(1)             <------                                                              --------->O2                    -------                                   --------->ARR14(3)         <---------ANAC58               <-------                                   --------->ARR14(2)         <---------TGA1a                --------                                   <---------ARR14(3)         <---------O2                 --------->YAB1                    <---------ANAC46   ----------->GT1     ----------->HVH21            --------->YAB1              --------->ARR11(3)   --------->ARR11(3)      ----------->TGA1            <---------ZAT6          <---------YAB1 <---------ANAC46          =====================bZIP_DOF     ----------->GT1 ----ARR14(2) <---------ARR11(3)   <---------ARR11(3)  <---------ANAC58         <------MYB46(1)   <-- --->ARR14(2) <---------AHL20(1)   <---------ARR14(2)  <---------ANAC58         <------MYB83 <------- --->ARR11(3) --------->AHL20(1) ----------->ARR10 ---------->DOF2 ----------------->AGL3 <---------YAB1   ctggcattgattttgatatattttgtggattggagaagatattgtcaaattttcaaagcttgtgacgttgccaaaattatgtaggtttagtgataataat  3107300  Previous    Next  AGI:  At3g10070.1    Description:  TAF12/TAFII58 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor. similar to EER4/TAF12B (TBP-ASSOCIATED FACTOR 12B), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G17440.2); similar to EER4/TAF12B (TBP-ASSOCIATED FACTOR 12B), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G17440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15948.1); contains InterPro domain Transcription initiation factor TFIID; (InterPro:IPR003228); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 3103885    to: 3106820    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10080.1    Description:  germin-like protein, putative. Identical to Germin-like protein subfamily 3 member 2 precursor [Arabidopsis Thaliana] (GB:Q9SR72); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G18980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15921.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Germin; (InterPro:IPR001929); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051) Range:  from: 3107280    to: 3108182    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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