Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <-----------HVH21            --------->ALFIN1           <-------MYC2           ------->MYC4           <-------MYC4           ------->MYC2           <-------PIF5           ------->PIF5           ------->MYC3          --------->TGA1a          <---------TGA1a          --------->O2          <--------ABF1          <---------O2                                                               <---------ALFIN1          <---------ANAC55(2)                                                     --------->AtMYB61          <---------ANAC46                                                        ------->GAMYB        <---------ALFIN1                                                         <---------MYB55(2)       --------->ATERF1(1)                                                       <---------MYB111(2)       <------NtERF2                                                             --------->MYB46(3)      <-----------------PIF3(1)                                                 ------>MYB83      <---------RAP2.3(1)                                                       ------>MYB46(1)      ------>NtERF2                                         <---------REM1(1)   -------->P     <---------bZIP60(1)        --------->GLK1(2)      <-------PIF5           --------->AtMYB61     --------->PCF2            <---------GLK1(2)       ------->PIF5           <---------MYB111(1)     --------->ANAC46--------->ANAC58                  --------->LBD16       --------->MYB46(3)     --------->bZIP60(1)     --------->LBD16          <---------ANAC46       --------->DEAR3(2)    --------->RAP2.3(1)  --------->ANAC58          --------->PCF5       --------->YAB1            ---   <---------ATERF1(1)   --------->ANAC58          <---------PCF2    <---------GLK1(1)           ---- ---------->RAV1(2)  --------->ANAC58             --------->ATERF1(1)--------->CCA1(2) --------->ANAC46 ----->TEIL<-------MYC3 --------->WOX13(1)      --------->ALFIN1    <---------ARR11(3) --------->O2 ----DOF2------>NtERF2  --------->GLK1(1)      <------ZmHOX2a(1)    --------->ARR11(3) <---------O2   gaacctggcgccacgtgtgagaccggcaatccagaatcgagacgttagaggagggcccgtggatgtagtagatatcagaaccaaccaccacgagactcga  3039800                                                                                                    <                                                          <----------DOF2                        ----                                                 --------->O2                                    ----                                                 <---------TGA1a                                 <---           --------->YAB1      <-------GAMYB     <---------O2                                <-------          <---------YAB1       ============================MYC_MYB                           <-------      <----------DOF2         <-----------RAV1(1)--------->TGA1a       --------->ATHB12  ------>ZmHOX2a(2)  --------->ZAT18             <---------MYB46(3) ====================bZIP_DOF        ----------->ARR10  <---------ZAT18      --------->ALFIN1         ------>MYB46(1)      <-----------HVH21  <---------At4g35610 ------>DAG2        <------ZmHOX2a(1)           ------>MYB83        <---------bZIP60(1)<---------AGP1 ------>DOF2    --------->TOE1(2)              <---------ALFIN1     --------->bZIP60(1)--------->ARR11(3)   aaagcgcggtttatgaaaactaggaatggggactgttgccaaaacatacccacttgacttcttttcagtggtgtcattggatagggtttgatctggcttc  3039900                                      <---------At4g35610                                      --------->At4g35610                                     --------->ANAC58                                     --------->ANAC58                    <---------KAN4(2)                                    --------->SPL7                      <---------ICU4                                   <---------MYB52(1)                   --------->YAB1     ----------                                  <---------SPL7                   XXXXXXXXXXXXXXXXXXXX>MIR169D-G                              <---------ALFIN1                     XXXXXXXXXXXXXXXXXXXX>MIR169A ---------ALFIN1             <---------ABI4(2)                 ----------->HVH21   ------>NtERF2 ------->HVH21               <---------ZAT2                   <-----------HVH21 --------->At4g35610 ----->ANAC46                <---------ZAT14                 --------->ALFIN1   <---------ZAT2 ------ETT(1)            <------ZmHOX2a(1)                 <---------ANAC46     ----------->RAV1(2) --ANAC58   --------->TOE1(2)<---------At4g35610          <---------DEAR3(1)    --------->ZAT2   <--- --ANAC58  --------->MYB46(3)--------->At4g35610       ------->GAMYBXXXXXXXXXXXXXXXXXXXX>MIR169B/C --   cgacacagggtgaaccagcgataaccaggacagcaccgtaagcacacatagagacaacgctcggtgtgacccaagaatgacctgctggccttgtaaagct  3040000                                                                           --------->ICU4                                                                       --------->SPL7                                                                     ------->MYC2                                                                     ------->MYC3                                                                     <-------MYC3                       <---------ARR11(3)                            <-------MYC2          <------ZmHOX2a(1)                                         <---------ANAC58          ==============HOX2a_HOX2a                                 <---------ANAC58 >DOF2--------->TOE1(2)--------->ARR11(3)                    <---------------ANT             -------- ------LBD16       ---------->DOF2                 ----------->GT1  <---------ANAC46         -------- ------->LBD16   ------>ZmHOX2a(2)            <---------ANAC46 ----------->HVH21            <--------   ccggtgaagctaggagggatcgaaagctcttggaaacgagtgagagagtcggatagtacaatcttgggacgcgtgcgatgatgtccaatagcaaatcata  3040100                    <---------GLK1(2)------>ZmHOX2a(1)     <---------WOX13(1)       --------------------->WRI1                  --------->ANAC58   <---------WRKY18(1)        <----------DOF2                             --------->ANAC58 *TSS    -- <---------WOX13(1)<---------At4g35610                              <---------LBD16     <-----------GT1 ->YAB1--------->ATHB12  <<<<<<<<<TBF1                         <----------DOF2        <---------ANAC58 ->ATHB12          --------->At4g35610                    ------>ZmHOX2a(1)      --------->ATHB12---- -ATHB12           <---------ZAT2 ---------->ID1    ------>ZmHOX2a(1)--------->LBD16  <---------ANAC58   gggattgactgatttggggacagcttcttcttctttgtcctagtcgtagtcttcctcttcctcttcttttccagggacgacattgatttcttactcttca  3040200                                                                           <---------AHL20(2)                                                                        <--------ATHB1                                                                        --------->YAB1                                                                        -------->HAHB4                                                                        --------->ATHB51                                                                        <---------ICU4                                                                        <--------HAHB4                                                                       <---------ATHB51                        <---------MYB52(1)                             --------->ICU4              --                      --------->ANAC46                               --------->YAB1        --------->ANAC58                      --------->ANAC55(1)            --------->AHL20(2)<---------YAB1      --------->AtLEC2                      <---------ANAC55(2)            <---------AHL20(2)--------->AHL20(2)  --------->ANAC58          >>>>>>>>>TBF1<-----------HVH21         --------->AHL20(2)--------->AHL20(2)      --------->ANAC46       >>>>>>>>>TBF1  --------->ANAC58       <---------YAB1      <----------DOF2  ------>MYB83     --    >>>>>>>>>TBF1     --------->ANAC58    <----------DOF2    <-----------GT1 <-----------GT1    <---- ---------------------->ANAC81 <----------DOF2  <---------YAB1  <---------DAG2    ------>MYB46(1)---- ------>DOF2        <---------ALFIN1  ----------->HVH21  <---------AHL20(2)--------->AHL20(2) -------   aaagaagaagaagaagaagacaacacgttagggcttttctgtgacttttgattatttatatttttgccttttaataattaaaccaaatacttcatgcaat  3040300                                                     --------->ANAC46                                             --------->CCA1(2)                                            <---------ARR11(3)                                            --------->ARR11(3)                                            <---------ARR14(3)                                            <---------ARR14(2)     ----------->GT1                        --------->ARR14(2)  ---------->DOF2                           <---------AGP1 ------->ANAC58             <---------AHL20(2)------>ZmHOX2a(2) ------->ANAC58             --------->ATHB12--------->AGP1                           --------->ZAT6 -----ATHB12               <---------AHL20(2)<------ZmHOX2a(2)                     <-----------GT1 ----->YAB1           --------->ANAC55(2)   --------->ARR14(3)               <----------DOF2 -->WOX13(1)        <-----------GT1<---------At4g35610                   <---------GLK1(1)   caagaaaaggagaattagttttttacttatttattgaagctctcaagatctgtatacaacatacttacaacatagaattcttttttatctctacaaaaaa  3040400                                                         <---------ANAC58                          --                                           <---------ANAC46           --------->ANAC58            <--           --------->ZAT14           ---------->ID1      <---------ANAC58                         <--           <---------ZAT14    <---------YAB1<---------LBD16      ------->TEIL    <---------ANAC46<---         --------------->AtSPL8--------->ATHB12       <----------DOF2 --------->ANAC58    <----------   aaacataaaactctgtactcaattctctgtctatgatttgttgttctgtggaaatactttcttgatgaactcaagaaaacgttgggagtagaatgttgga  3040500             ---------->DOF2   --------->At4g35610 --------->MYB46(3) ------->MYB52(1) -------WRKY12         ---------->DOF2                                                   --------->YAB1 -------WRKY38(1)     --------->YAB1                                                <---------------- ---ZmHOX2a(2)      --------->GLK1(2)                                            <---------ARR11(3) -RAV1(1) <------ZmHOX2a(2)                                                      --------->ARR11(3)   tcaacggctgagatcgaaagagaatcaaagtgaagagatttataagcatgttcaatcttcttggtcatgttgtactcttgtaagatgtctataatgccaa  3040600                   <-----------HVH21                <---------ZAT2                <---------At4g35610                --------->ZAT2                --------->ZAT14                --------->At4g35610         ==========================================bZIP_DOF                         <---------ZAT18         <---------DEAR3(1)                                                   <------NtERF2         --------->TGA1a                                                      <---------MYB52(1)         <---------bZIP60(2)                                                 --------->LBD16         --------->O2                                                        <---------RAP2.6(3)         <---------bZIP60(1)     <------------------------ANAC81            <---------RAP2.6(2)         --------->bZIP60(1) <---------ARR11(3)                             --------->RAP2.6(2)         --------->bZIP60(2) --------->GLK1(2)                      <---------At4g35610         <---------O2        --------->ARR14(2)                --------->At4g35610  --------->ZAT18         <---------TGA1a     <---------ARR14(2)                <---------At4g35610  --------->ZAT14      <---------TOE2(1)--------->AtLEC2                 --------->LBD16     --------->ATERF1(2)      <---------TOE1(1)<---------ANAC55(2)             --------->LBD16      <---------ATERF1(2)   ---     --------->SPL7<---------RAP2.6(3)     <---------ARR11(3)  --------->ZAT2------>NtERF2        --- <---------------AtSPL8----------->GT1  <----------DOF2--------->ANAC46    <---------LBD16        <-- -----WRI1<-----------HVH21  --------->ARR11(3)       <---------LBD16      --------->RAP2.6(3)   <---   ggtagagtacgacgtcgcagcagtcatgtaaaatctgcttctctttatcttctcttcccggtatcagctctgctcttgccggcatgttcactccttgctg  3040700  Previous    Next  AGI:  At3g09915.1    Description:  pseudogene, hypothetical protein Range:  from: 3039020    to: 3040191    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09920.1    Description:  PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase. Identical to Phosphatidylinositol-4-phosphate 5-kinase 9 (PIP5K9) [Arabidopsis Thaliana] (GB:Q8L850;GB:Q9SF93); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G10900.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G60890.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ77090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62999.1); similar to hypothetical protein OsI_009300 [Oryza sativa (indi Range:  from: 3040308    to: 3043917    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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