Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->ATHB12                                                            <---------ZAT6        <-------TEIL                                                         ------>ZmHOX2a(1) <---------ZAT14                                                     ------>ZmHOX2a(2)     --------->At4g35610                                  ----------->GT1   <---------GLK1(1)      --------->ZAT14                              ---------->DOF2       --------->GLK1(1)  --------->GLK1(2) --------->AHL20(2)      <---------HSFB2a(2)       <---------ARR11(3)  --------->ARR14(2)           - <---------AHL20(2)  --------->ARR14(2)            --------->ARR11(3)  <---------ARR14(2)<----------- -->At4g35610        <---------ARR14(2)           --------->YAB1      <---------CCA1(2)  <----------- ---At4g35610       <------ZmHOX2a(1)            <---------ATHB12     <---------GLK1(1)  ------------   gatttaaacactgatgctaagaggatactcgaagaagcgataaacaactcaatgatctcctagtgatgctgcaaatctgcagagttcattggccagtttt  3034200        <---------ZAT14        --------->ZAT14            --------->TOE2(3) ----->NtERF2                 <----------DOF2         <---------MYB46(3) ------AGL2                   <---------DAG2      <---------AtMYB61   ----------->GT1 ------AGL1                <-----------GT1    <----------DOF2        --------->DAG2 ----->AGL1             --------->TOE2(3)  ------>ZmHOX2a(1)       ---------->DOF2<---------YAB1   ggcgactcagtgaagtagtagcaaaatgttaactttttcttaatcctgttttttggtggtttcatatacaaaaggtttcaaattttgatacctatggaat  3034300                      --------->YAB1             <---------DEAR3(2)          --------->REM1(2)             --------->CCA1(2)          <-----------HVH21      --------->YAB1         ----------->HVH21      <---------YAB1        --------->LBD16       --------->YAB1       <---------ANAC58       <---------ICU4       <---------ANAC55(2)    -------->ATHB1       <---------ANAC46      --------->AHL20(2)       --------->ANAC55(2)   <---------ATHB51 --------------->AtSPL8       <---------ANAC55(1)   --------->ICU4   <---------------AtSPL8       <---------ANAC58      <---------AHL20(2)----------->GT1                                   <---   <---------HSFB2a(1)<---------ICU4   <---------ARR14(2)           <----------DOF2            <----- --------->ARR11(3)  <---------ATHB12  --------->ARR14(2) <-----------GT1                     <------ <---------ARR11(3)  --------->ICU4 --------->YAB1       --------->AHL20(1)                --------->YAB1   taagaacttccgtgtcggttttaatcatgaaattattatcagatttgagtagtacaaaatatactagtttctttgtaagaaaactggaatcaattttaaa  3034400                                                            ----------->GT1                                                     >>>>>>>>>GATA-3                                                     >>>>>>>>>GATA-4                                                <------MYB46(1)                                                <---------MYB46(3)                                                <------MYB83--------->ALFIN1                                               --------->ALFIN1                                               <---------AtMYB61                                               --------->MYB111(2)                                ---                                               <---------MYB46(3)                           --------- ------ICU4                                    --------->MYB111(1)                         ---------- ------GT1      <-----------GT1    ----------->GT1   >>>>>>>>>GATA-2           ---------->DOF2   ---- -----GT1    --------->YAB1      <---------At4g35610 >>>>>>>>>GATA-1          --------->AHL20(2)-----   catttcaaacatctatattaacaagaaggaaattgagcggtttaataagttggtggattgaagtgtgaatacttgagaaataaaagactaaaacagtaaa  3034500                             <----------DOF2                     <---------ATHB12                  --------->AtMYB61    <---------AHL20(2)     --------->At4g35610    --------->AHL20(1)     --------->ZAT2    <---------AHL20(1)  --------->At4g35610            --------->ICU4    --------->AHL20(2)--------->YAB1               <---------ZAT14 -------->GT1    ------------>CBF                  --------->ZAT14                                  - >At5g28300      --------->MYB46(3)                <---------ZAT18                         --------->LBD16 ->GT1    <---------YAB1<---------At4g35610   <---------ZAT2                <----------DOF2------>NtERF2 ----->DAG2   --------->MYB46(3)             --------->ANAC58           <----------DOF2   <---------DEAR3(1) ----->DOF2   ------>ZmHOX2a(2)              --------->ANAC58 *TSS <----------DOF2       <---------LBD16   aagtaataaaatatgatccaccaatgagcagctttgaacttgatagcaagcagagcacttattctgcctctttcctttctttttggctgtctccggcgag  3034600                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------                                                                                              -------            ----------->GT1                                         --------->ATHB12         <-------          --------->LBD16                                           <---------ICU4           <-------         <---------LBD16                                           --------->ICU4            --------         --------->LBD16                                           <---------YAB1           <--------        <---------HSFB2a(2)                                      ----------->GT1            <--------        <---------ANAC46                                       --------->ZAT14              <--------        <---------LBD16                                        <---------ZAT14              <--------       <---------LBD16                                    <-------TEIL--------->ICU4        <--------  <---------GLK1(2)                                      --------->CCA1(2)                  <--------  <---------ARR11(3)                                    <---------ARR14(2)                -----------  --------->ARR11(3)                                    --------->ARR14(2)    --------->ARR11(3)  <-- <---------RVE1(1)                                     <------ZmHOX2a(1)      <---------ARR11(3)<---- ---------->ARR10      ---------->DOF2           ---------->DOF2 --------->YAB1          <---------DEAR3(1)   aagagattttccgggggaaaatagcaaaagctcggttttagtttctgtttagaaagaggatacagaatagtgattactaacatcttctccgatggcggtt  3034700   <------NtERF2  --------->LBD16  ------>NtERF2  --------->ANAC58  --------->ANAC58 --------->RRTF1(3) --------->RRTF1(2) <---------ATERF1(2) --------->DEAR3(1) <---------DEAR3(1) --------->DREB2C(2) --------->RAP2.3(3) --------->ATERF1(2) --------->RAP2.3(2) -------->ERF1 -------->RAP2.3(1) ---------LBD16 -------->ORA47(2) -------->ATERF1(1) ------NtERF2 --------ATERF1(1) --------RRTF1(1) --------RAP2.3(1) ---->NtERF2 ----ARR14(2) --->ARR14(2) --->ALFIN1 -GAMYB -->ATERF1(1) --MYB46(3) --DEAR3(2) ->MYB55(2) -ANAC58 -DEAR3(1) -ANAC46--------->ARR11(3) -DREB2C(2) -RAP2.6(2) -ANAC58<---------ARR11(3)                                    <--------P                            - ->AtMYB77              --------->YAB1               ----------->HVH21    <----------DOF2          -- -------ANAC46         --------->ICU4         ------>ZmHOX2a(1)        ------>NtERF2     <----------- -----ATERF1(1)        <---------YAB1  <---------GLK1(2)     --------->At5g28300         <-----------   gcgccggcaagagctcgttcagactatgattatctcatcaagcttctcctcatcggtgatagcggtaagtctctgcctttctatctcttaagaagtactg  3034800                                                =====================HOX2a_HOX2a                                                ------>ZmHOX2a(1)                                              --------->At4g35610                                              <---------At4g35610                                              ----------->RAV1(2)                                      --------->HSFC1(2)                                      --------->HSFB2a(1)                                      <---------HSFB2a(1)                                      <---------HSFC1(2)                     <---------YAB1                                     <---------ARR11(3)                <------MYB83            <-----                                     <-----------ARR10                 <------MYB46(1)         <-----         <-------TEIL                --------->GLK1(2)                --------->MYB59          <----- --------->MYB52(1)                  --------->ARR11(3)               <---------TOE2(3)       ------- -------->TOE1(2)                    --------->ARR14(2)        ------>ZmHOX2a(2)             <------- ------->MYB46(3)                    <---------ARR14(2)       <------ZmHOX2a(2)--------->ARR11(3) <-- ----AtSPL3                         <---------GLK1(2)         --------->At4g35610       <----------DOF2 ----AtSPL8                      --------->LBD16======================HOX2a_HOX2a       <---------DAG2   aacaaacgaggttcagagactattgcatttttatccgagaatcttctctcctgcctgttttgcgatctgaattaggtttatgattttgaacttttttgcg  3034900                                                       <---------WOX13(1)                                                    <---------YAB1 ----ANAC46                                         <---------AHL20(2) ----ANAC58                                         --------->AHL20(2)          <---------HSFB2a(2) ----ANAC58  <---------ANAC58                    <----------DOF2                --------->HSFB2a(2) --->ID1     <---------ANAC46            --------->ZAT14                     <----------DOF2      --- ----GT1  <----------DOF2  ---------->DOF2<---------ALFIN1                  <---------DAG2       <--- --------DOF2<---------ANAC58         --------->At4g35610                <---------ZAT18   ----------   ttttttgtttttctttcgtgtttgatcaacaaagtagatgagctacactctcttttaattgaagtatcaacgtagttcccttttggaagttttggctcaa  3035000        <---------ARR11(3)  --------->ANAC58                                                                                  <  --------->ANAC58                                   <-----------GT1                            <----  --------->ANAC46   <---------GLK1(2)          --------->AHL20(2)                             <----- ------>YAB1         --------->ARR11(3)         <---------AHL20(2)                           <------- ------ATHB51      ----------->ARR10     ------->TEIL<---------AHL20(2)                      -------- >ID1   --------->ARR11(3)            <---------ATHB12         <-----------GT1              <--------   ttataagcaatatctcaaacttagattttgtgaagaactaatgaatcagttttattaacttgattttacaatgagttcagatagagttgcacaaatcatc  3035100  Previous    Next  AGI:  At3g09890.1    Description:  ankyrin repeat family protein. similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G19150.2); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G19150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63004.1); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 3032564    to: 3034448    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g09900.1    Description:  AtRABE1e/AtRab8E (Arabidopsis Rab GTPase homolog E1e); GTP binding. similar to AtRABE1d/AtRab8C, GTP binding [Arabidopsis thaliana] (TAIR:AT5G03520.1); similar to ras-related protein RAB8-3 [Nicotiana tabacum] (GB:BAB84324.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63003.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078) Range:  from: 3034562    to: 3036598    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version