Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->CCA1(2)                       <---------AHL20(2)                       --------->AHL20(2)                       --------->YAB1                   <---------YAB1 <---------ARR14(2)                                              ---                  --------->ARR11(3)                                                          -------                ----------->GT1   --------->ARR11(3)   --------->YAB1                   --------->YAB1      <-------TEIL<---------ARR11(3)          --------->GLK1(2)                 --------->ICU4------- -------At4g35610--------->YAB1   --------->ARR14(2)  --------->ICU4     <---------AtLEC2    -------- --->TEIL <-------TEIL<---------YAB1         <---------GLK1(2)  <---------YAB1------->TEIL <--------- ---REM1(1)   ---------->DOF2     <---------ARR11(3)--------->YAB1 <---------YAB1  <---------YAB1 <--   agctcatatacatacataaagataattatatatgaagatttgtgaaagattctaaaatgatgaaatatgatttttgtatgaacttatgaatagtaaccac  3018900                            --------->ANAC58                        --------->ANAC58 ------>At4g35610       --------->ANAC58--------->YAB1 >GAMYB      --------->CCA1(2)         <---------YAB1 -->AtMYB61 --------->ARR11(3) --------->RAP2.6(3) ->MYB46(3) <---------ARR11(3)--------->MYB52(1)                --------->WOX13(1) --GT1    ----------->ARR10 --------->ANAC58             <---------At4g35610    <---------ANAC46 -------At4g35610 ------->TEIL--------->ARR14(2)      ---------->DOF2        <----------DOF2   agctaaattagtaagatatgtatattaagcaagaacggcttatcagagttttgttccaaagctgatcaatctactcgtgcttaagtgtatatttgtggta  3019000                                                             <---------ICU4                                                             -------->HAHB4                                                             --------->ATHB12                                                            --------->ICU4                                                            <---------YAB1                                                            <---------ATHB51                                                          --------->YAB1                                                         --------->AHL20(2)                       --------->YAB1                    <---------ATHB51                      <---------YAB1                     <---------AHL20(2)                    <-----------GT1                 --------->YAB1                <------ZmHOX2a(1)                 <---------ICU4                    ----------->GT1           --------->HSFB2a(2)                --------->AHL20(2)             <---------AHL20(2)            <---------HSFB2a(2)                <---------AHL20(2)             --------->AHL20(2)         --------->ARR11(3)             ------>ZmHOX2a(1)           --------->TOE2(3)<---------ICU4<---------TOE2(3)        <---------GLK1(1)               --------->YAB1   --------->ICU4 <---------TOE1(3)    >>>>>>>>        --------->GLK1(1)    --------->AHL20(2)--------->AHL20(1)   <----------DOF2          >>>>>>>>   atgtgttaagagttcctattaattaccataagtaaatcacaaacataaataaaatgaaaataattatgggctttaaggtctggaggactactgaaatttg  3019100                                                                                          <---------HSFB2a(2)                                                                                          --------->HSFC1(1)                                                                                          <---------HSFC1(1)                                    <------ZmHOX2a(1)                                     --------->HSFB2a(2)                                   <------MYB83                                      --------->HSFC1(2)                                   <------MYB46(1)                                   <---------HSFB2a(1)                                  --------->MYB59              <------ZmHOX2a(1)     --------->HSFB2a(1)     --------->MYB111(2)         <--------P      <---------ANAC46          --------->ANAC58     --------->MYB111(1)       <------MYB83--------->ARR11(3) ----------->GT1  ---------->DOF2 >CBP60g                       <------MYB46(1)   <---------ANAC58          --------->ANAC58 >SARD1      ---------->DOF2<---------MYB52(1)   <---------ANAC58  <---------AHL20(2)<---------HSFC1(2)   ggagaagtagttggaaaaagaatattagtcgataggtaggaaattgatattgcttgtggaatggaggaaaaaattgaacgaaaaagaagtttctagaatt  3019200                                                                                    --------->DAG2                                                     <------MYB83 <---------HSFB2a(2) ----------->GT1                  ----------->GT1                    <---------DEAR3(2)            ---------->DOF2                  <---------ANAC46 ----------->GT1   <------MYB46(1)       --------->ANAC58        --          --------->TOE2(3)       --------->DAG2     <---------MYB46(3)    --------->ANAC58     -----    --------->ANAC55(2)          ---------->DOF2    <---------DEAR3(1)   --------->CCA1(2)   --------    <---------ANAC55(2)  <---------ARR14(2)        <--------P     --------->HSFB2a(2)----------->GT1   ctaatcacataacataaatagggtgaatatttgggaaaagtaaaacaataggggtcggtttgatattactagaagataagaaacaaaaaggaaaataaga  3019300                                                                            --------->ARR14(2)                                                                            <---------ARR14(2)                                                                           <---------At4g35610                                                            --------->ARR14(2)                                                            --------->ARR11(3)                                                            --------->GLK1(2)                                                            <-----------ARR10<------ZmHOX2a(2)                                                            <---------ARR11(3)  ----------->GT1                             --------->CCA1(2)            --------->At4g35610  <----------ID1                             <---------ARR11(3)        <-----------HVH21  --------->GLK1(1) <---------TOE2(3)                           --------->ARR11(3)       <----------DOF2 --------->YAB1 ----------->GT1               --------->ANAC58 <---------YAB1    <---------ZAT14    <---------YAB1 -------->DOF2                 --------->ANAC58 <---------AHL20(2)<---------ZAT18  --------->YAB1 ---->YAB1           <----------DOF2         *TSS           <---------ARR14(2)------>ZmHOX2a(2) <---- ->YAB1   ---------->DOF2      --------->ANAC46 --------->AHL20(2)--------->ZAT14  <---------ICU4   ataaaggaaaaaaaaagagctctcttttccaacaagaaacgtagagagatataattagagaaaatctgtgctctttcagatcccattatcacaaatccat  3019400                                     --------->DAG2                     <----------DOF2       -------                                    ---------->DOF2                 <---------GLK1(1)         <------                               >>>>>>>>>TBF1                        --------->GLK1(1)      --------->WOX13(1)                        ---------->DOF2                       <---------LBD16<---------MYB52(1)                 ------------------------>ANAC81         <---------GLK1(1)  --------->TOE2(3)<------- -----CCA1(2)<---------------------WRI1         <----------DOF2   <---------ZAT18 --------->TOE2(3)   ctctctctctctctcagagaagaaaccaaagaagaagaaaaagctctcaactttcttcgatttctcagggaactctttcgttaatctcaaactcaatcat  3019500                                                                                  ---------->DOF2                                      ------>ZmHOX2a(2)                   <-----------ARR10                                     <---------GLK1(1)                    <---------ARR11(1)                                     --------->GLK1(1)                    --------->ARR14(2)       --------->ZAT2                <------ZmHOX2a(2)                    --------->ARR11(3)       ----------->RAV1(2)          <---------AGP1                        <---------ARR14(2)       <---------At4g35610          --------->ARR11(3)                    <---------ARR11(3)       <---------ZAT2               --------->AGP1                       <---------ARR14(1)       --------->At4g35610          <---------ARR14(2)                   <---------CCA1(2)     <-----------RAV1(2)            <---------ARR11(3)                <---------LBD16  --------->ANAC46     --------->ANAC58                    ------>ZmHOX2a(2)------>ZmHOX2a(2) -------->P            --------->ANAC58                   <------ZmHOX2a(2)--------->GLK1(1) -->YAB1    <---------ARR14(2)      --------->ARR14(2)   --------->ARR14(2)<------ZmHOX2a(2) ---ICU4    ------->TEIL  <---------TOE1(2)       <<<<<<<<<MYB2      <-----------GT1 --ATHB12   --------->ARR14(2)     <---------CCA1(2)     <---------ARR14(2)--------->HSFB2a(1) <-----   gtctaccccagctgaatcttcagactcgtaagtacccagatctctgattttggttttccgatcgggatttttttcggatcttcttaaagtctgggttttt  3019600                          ------>ZmHOX2a(2)                        --------->ARR11(3)                        <---------ARR11(3)                     <---------WOX13(1)                     <--------P                    <-------GAMYB                                                      <---------ARR11(3)                  <---------AtMYB61                        <-----------RAV1(1)         --------->ARR11(3)            <---------TOE2(3)                  --------->TOE2(3)           --------->GLK1(1)    <---------LBD16<---------MYB46(3)          --------->YAB1            <------ZmHOX2a(1) ---------- ------GT1  <---------TOE1(3)                ------->TEIL<----------DOF2--------->ANAC46<---------GLK1(1)   cgattttggggattagggttttggttgatcttgtgtttctatagttgaatcttaatcttctttgttgttgttacaggaaatcgaagaaagatttcagtac  3019700                                      <------NtERF2                                    <---------DEAR3(1)                           --------->DEAR3(2)                           --------->HSFB2a(1)                      <---------MYB52(1)             <-                           --------->HSFC1(2)                      <-----------HVH21               --            <------ZmHOX2a(1)<-----------HVH21            --------->YAB1                 <---------ATHB12     <---------HSFB2a(2)   <---------HSFC1(2)            <---------YAB1             --------->AtLEC2 ----->AtSPL3             --------->SPL7               --------->YAB1  <---------CCA1(2) --------->MYB46(3)   tgctattctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataactccgtcgtctctcttcaccctgcaaccatggag  3019800  Previous    Next  AGI:  At3g09830.1    Description:  protein kinase, putative. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G03320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68919.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 3016499    to: 3018988    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g09840.1    Description:  CDC48 (CELL DIVISION CYCLE 48); ATPase. Identical to Cell division control protein 48 homolog A (CDC48A) [Arabidopsis Thaliana] (GB:P54609); similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to putative spindle disassembly related protein CDC48 [Nicotiana tabacum] (GB:ABF59516.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18187.1); similar to Cell division cycle protein 48, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53974.2); Range:  from: 3019345    to: 3023057    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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