Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ANAC58                                                                                     --------->ANAC58                       <-------TEIL                                      --------->At4g35610---------                      --------->AtLEC2                                   <---------At4g35610-------->HAHB4                   <-------TEIL  <---------ANAC55(2)       <---------ANAC55(2)   --------->ANAC58          <---------WOX13(1)     --------->ANAC55(2)       --------->ANAC55(2)   --------->ANAC58 --->MYB46(3)  <-------TEIL --------->YAB1<---------ARR11(3)           <-----------RAV1(2) <---------ATHB12   accaaaattcggattgatacatacatgcattaatcacataactaaatcttatcggagaatcacataactaagcacagatgagaacgcaaacaaatgattc  3008300                                                              ------>ZmHOX2a(2)                                                            --------->ARR11(3)                               --------->YAB1               --------->ARR14(2)                               <---------ICU4               <---------ARR11(3)                      ============================HOX2a_HOX2a<------ZmHOX2a(2)                      -                      ------>ZmHOX2a(2)                 ---------->DOF2                            --                    --------->ARR11(3)            --------->LBD16                      <---------ARR14(2)                    ------->TEIL                <---------LBD16                        --------->ARR14(2)                    --------->ARR14(2)         --------->MYB52(1)         --------->MYB52(1)  -------                    <---------ARR11(3)       <------ZmHOX2a(2)===============================HOX2a_HOX2a                    <---------AGP1         =========================HOX2a_HOX2a       ===============                    <---------ARR14(2)     ==========================HOX2a_HOX2a      =============== <-----------------AGL1       <---------YAB1<-----------HVH21================================HOX2a_HOX2a >ATHB12     <------NtERF2  --------->YAB1 <------ZmHOX2a(1)<---------ARR14(2)        <------ZmHOX2a(1)   aagactcaaataggcagcaatggatctcgataatcataatccaaaggatcaccggaataaaagatcggagaagaagtaatggattggaggattcaaatgt  3008400           ------>ZmHOX2a(2)          <------ZmHOX2a(2)                                                                   -------         --------->ARR14(2)                                                            --------->At4g35610         <---------ARR14(3)                                                            <---------At4g35610         <---------ARR11(3)                                                            <------ZmHOX2a(2)         <---------ARR14(2)                                                           --------->ARR14(2)         --------->ARR11(3)                                                           <---------ARR11(3) -------->DAG2                                       <----------DOF2                  <---------ARR14(2) -------->DOF2                                  <---------At4g35610               <---------LBD16 ---->GT1--------->ARR14(3)                     <---------GLK1(1)             <----------DOF2 *TSS =================HOX2a_HOX2a         XXXXXXXXXXXXXXXXXXXX>MIR319C      <---------ALFIN1------>ZmHOX2a(2) ================HOX2a_HOX2a     <---------LBD16--------->GLK1(1)   <-----------HVH21 <---------AGP1   gaaaagcgcaagatcgtcgagacagaagaaatcgcctcggagtgagagagagctcctttcgctgtttcagtgtcacactgcttatcgggatctgaatgct  3008500                                    --------->LBD16                          <------------CBF                         <---------AHL20(2)                         --------->ATHB12                    <---------YAB1<---------LBD16                    <---------AHL20(2) <-------TEIL                  --------->YAB1--------->ARR14(2)                 <---------YAB1 <---------ARR14(2)                <-----------TBP<---------GLK1(1)       ----------->HVH21<---------AHL20(2)                                     <---------MYB52(1)     --------->At4g35610--------->AHL20(2)  --------->WRKY12                 <---------ANAC58     ----------->RAV1(2)<---------AHL20(1)  --------->WRKY38(1)              <---------ANAC58     <---------At4g35610--------->AHL20(1)  ----------->HVH21           <---------At4g35610 ---->GT1    <---------MYB52(1)--------->GLK1(1)                        --------->At4g35610   taatttcatctgaccggtttttataatttattgatatccggttcatttgaccatggccgtttaagaacataggctgatgccgtttcttattttcagacac  3008600                                                                                                    -                                                <---------At4g35610                                *TSS                                                <---------ZAT2                                  -----          <---------MYB52(1)                    --------->At4g35610                             <----         <---------RAP2.6(3)                    --------->ZAT2                                 ------        <---------ANAC58                        ----------->RAV1(2)                         ---------        <---------ANAC46--------->GLK1(1)      <-----------RAV1(1)            <---------DAG2---------        <---------ANAC58<---------GLK1(1) <----------DOF2            ---------->DOF2        --------- <----------DOF2    --------->AtLEC2    <---------At4g35610    ----------->GT1<----------DOF2------->GAMYB   taactttgtgccgttttatttcatggaaatcgaaatgttctctgcttctctgctggagctagagaaggtataaaagtaaactttttcaggtccaacgcag  3008700                                                                                                  --- --------->DAG2                                                                              -------- --------->DOF2                                                                              <------- ---->At4g35610                                                                             --------- -----At4g35610                                                                            --------->DOF5.7(2) ----->RAV1(1)      <----------DOF2   ----------->RAV1(2)    ----------->HVH21       <----------DOF2 >ANAC58        ------>ZmHOX2a(1)    ------>ZmHOX2a(1) --------->WRKY12          <---------RAP2.6(2)- >ANAC46   <----------DOF2      <---------ANAC58       --------->WRKY38(1)      --------->RAP2.6(3)<- >ANAC58 ------>ZmHOX2a(1)      <---------ANAC58       ----------->HVH21      ----------->HVH21   <--   caaaaagtctcctctttcctctctttctctctctgcgtccttctgaggctggaagcgatgaccatgacagcatttctcgcgagacggcttatcggtaacg  3008800        <---------ARR14(2)        <---------GLK1(2)        --------->ARR14(2)      ----------->ARR10                   <-------TEIL                                ---------->DOF2 ------>ARR14(2)                         <---------MYB52(1)                         <------ZmHOX2a(2) ->MYB52(1)  <---------LBD16        <---------MYB52(1)                        --------->ANAC46 --DOF5.7(2)<---------LBD16         <-----------HVH21  --------->HSFB2a(2)=================HOX2a_HOX2a -->HVH21--------->GLK1(2)       <---------LBD16   <---------MYB52(1)     ------>ZmHOX2a(1) ----->ZmHOX2a(2)             <---------ZAT2     <---------ANAC58      ====================HOX2a_HOX2a -----ZmHOX2a(2)              --------->ZAT2     <---------ANAC58      ------>ZmHOX2a(1) -------ARR14(2)            >>>>>>>ZML2<---------DEAR3(2)    <----------DOF2<---------ALFIN1      <--   gatcgagccagattctcgggacttcgagttctagctccggtccgttcatttccgtttctagggctttcttctcctcctccactccgatcaaagctactct  3008900                                 ------->TEIL                     --------->ANAC58                     --------->ANAC58                     --------->LBD16                <---------DEAR3(2)       --------->ANAC58               ------>ZmHOX2a(2) <---------ARR14(2)             <---------ARR14(2)  --------->ARR14(2)<---------DAG2      ----------->HVH21 --------->ARR14(2)   --------->At4g35610                       <-----------GT1     <-----------HVH21--------->LBD16    --------->ANAC58                  <---------ANAC46   <------    --------->LBD16 <---------HSFB2a(2) --------->WOX13(1)       <----------DOF2   <---------TOE2(3)   --------->LBD16  --------->HSFB2a(2)---------->DOF2    --------->WOX13(1)     <---------AHL20(2)  <---------LBD16<-----------HVH21   <-----------HVH21 <-----------GT1     ----------->GT1    ------- --------DOF2--------->ARR14(2)  --------->GLK1(2) <----------DOF2       <---------ANAC46------------   ctttcccggtgatgggatcggtcccgaaatcgctgaatctgtcaagcaggtcccttttttcaatctactttggtgttgtgtaatttatgttaccatataa  3009000                                                          <-----------HVH21                                                       <---------ANAC55(1)                                                       <---------ANAC58                                                       <---------O2                                                       --------->ANAC55(2)                                                       --------->TGA1a                                                       <---------ANAC46                <---------ARR14(2)                     <---------ANAC55(2)                <---------GLK1(2)                      --------->O2                --------->ARR14(2)                     <---------ANAC58          --------->GLK1(2)   --------->TOE2(3)        =====================================bZIP_DOF         <---------GLK1(2)<------ZmHOX2a(1)            <---------bZIP60(2)        --------->DAG2   <---------YAB1       <---------TOE1(2)     ===================bZIP_DOF        ---------->DOF2 ---AHL20(2) --------->HSFB2a(2)              <----------DOF2                 --------->YAB1 -->AHL20(2) <---------HSFB2a(2) <---------ICU4        <---------TGA1a --------->CCA1(2) ----->AGL3 <---------LBD16   --------->YAB1  <---------DAG2        ----------->ARR10    ---------->ID1   attttgttatagattctggatactcttaggaaccataatgtctgaatactttttgagacgtgtcaagggagagatttgaatcataaagtttgtttttttt  3009100                                                                                                    <                                                                    <---------YAB1                  -                                                      <-----------RAV1(1)                  <-------GAMYB                                           <-----------RAV1(2) <---------bZIP60(2)        <---------MYB46(3)                                           =======================RAV                     --------->MYB55(2)                                          ------>ZmHOX2a(2) ----------->HVH21             --------->MYB52(2)                --------->HSFB2a(2)     <---------ARR14(2)<---------At4g35610           <---------MYB52(1)                <---------HSFB2a(2)     --------->ARR14(2)--------->At4g35610 <----------ID1  <------MYB83           <---------MYB46(3)       <---------At4g35610   ------>NtERF2    <---------WOX13(1) <------MYB46(1)       ----------->HVH21       <----------DOF2      <---------At5g28300  --------->ATHB12 --------->MYB111(2)     <---------At4g35610       <---------DAG2     <---------ZAT14  <-------GAMYB       ------------>MYB.PH3(2)   agtttatagctgatggttctgaaaatgttttccctttatgctgatccaggtgtttactgccgctgatgtggttattgattgggacgaacagtttgttggt  3009200  Previous    Next  AGI:  At3g09800.1    Description:  clathrin adaptor complex small chain family protein. Identical to Coatomer subunit zeta-2 [Arabidopsis Thaliana] (GB:Q84LG4;GB:Q3E7U0;GB:Q9S7S7); similar to clathrin adaptor complex small chain family protein [Arabidopsis thaliana] (TAIR:AT4G08520.1); similar to nonclathrin coat protein zeta1-COP [Brassica rapa] (GB:BAA92778.1); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Clathrin adaptor, sigma subunit/coatomer, zeta subunit; (InterPro:IPR000804) Range:  from: 3006520    to: 3008494    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09810.1    Description:  isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative. Identical to Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial precursor (IDH6) [Arabidopsis Thaliana] (GB:Q8LG77;GB:Q9SF84); similar to isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G03290.1); similar to NAD-dependent isocitrate dehydrogenase alpha subunit [Brassica napus] (GB:AAO61642.1); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434) Range:  from: 3008699    to: 3011442    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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