Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->DAG2                                             ---------->DOF2        <---------AHL20(2)              <----------ID1   <----------DOF2        --------->AHL20(2)      --------->GLK1(2)       ------>ZmHOX2a(2)     ----------->GT1           <---------GLK1(2)       <---------YAB1 ------->DOF2                 <---------At4g35610     <---------ARR11(3) ->MYB46(3)                   --------->At4g35610     --------->ARR11(3) ---------->DOF2   caaagaaagattaatttcaaatccaatttctcagattccaaaaaaacaaaaggcatgatctttgacaaataacttaaaagcctaatcttttatcaagaga  2995200                                                                      ------>MYB83                                                                      ------>MYB46(1)                                                                     ----------->RAV1(1)                                                                    ------->GAMYB                                                              <------ZmHOX2a(1)                                   --------->ARR11(3)       <---------TOE2(3)                      --                             --------->TOE2(3)         --------->GLK1(2)     --------->YAB1    ------                             --------->TOE1(3)<---------WOX13(1)   --------->MYB46(3)         -------   ctcgacttaaacaatctactaaacccctaaaccctaaaatcatggaagattgatgaaattctgaggataaccaacaaaatcaaaaccatgagcaaaataa  2995300                                                                                                    <                                                                                                    <                                                                                               <-----           <---------AHL20(2)                                                                  ------           --------->AHL20(2)                                                                 -------   ---------->DOF2           <---------YAB1                                     <----------DOF2------ -------->DOF2              <---------ARR11(3)                      --------->MYB52(1)        <------ --->AHL20(2)         <---------ARR11(3)             --------->ATHB12<---------TOE2(3)   <------ZmHOX2a(1) -->AHL20(2)    <-----------GT1             <---------WOX13(1)      <-----------GT1   <---------At4g35610   aaaaagaaagaaatttataaacaatatcaatatcaatggaagatagattgaaacaagattggaatggaattaacgagagaccctttgcagaggagaatga  2995400    <---------MYB46(3)    <------MYB46(1)    <------MYB83                                              --------->LBD16 ---------YAB1                                               --------->HSFB2a(2) -----------RAV1(1)                       <---------YAB1     <---------HSFB2a(2) ----ICU4                             <----------DOF2   <---------ZAT2 --->ATHB12                      <---------ANAC58       <---------At4g35610                --------->GLK1(2) -->ICU4                     <----------DOF2   --------->WOX13(1)        --------->DAG2   <---------GLK1(2) --->YAB1               <<<<<<<<<TBF1 <---------DAG2    --------->ZAT2  ---------->DOF2>>>>>>>>>TBF1 ---YAB1     --------->ANAC55(2) <---------ANAC58       --------->At4g35610      <------ZmHOX2a(1) --   ttatgttggtgagacacatgatgttcttcttctttgcgagctttatcatccatcatcgagctcccagagaatagaaaagcagaggagaagaagaatctct  2995500                                       <------ZmHOX2a(1)     --------->ANAC58                                      ----------->GT1        --------->ANAC58               --------->At4g35610  <-----------RAV1(2)    --------->MYB52(1)             --------->ANAC58             --------->YAB1   <---------ICU4              --------->ARR11(1)       ---------->DOF2<--       --------->YAB1        <---------YAB1           ---------->DOF2    <----------DOF2  --------->ANAC58 ------->MYB46(3)            --------->ICU4     ----------->GT1    <------ZmHOX2a(1) <----------ID1   aacaaacaatgaaaatcagaagaaaaatttgataattagcaggagaaaaattgtagaaaagaaacggcaggaaccctttggaggtaaaagacaagtccct  2995600                                 --------->YAB1                      --------->ARR11(3)                      <---------ARR11(3)                     --------->RVE1(1)                     <---------GLK1(1)                     --------->GLK1(1)                    --------->ARR11(3)                    <---------ARR11(3)                                                         <-----          --------->LBD16       <------ZmHOX2a(2)                                              <-----          =============================HOX2a_HOX2a                ------------>CBF            -------          ------>ZmHOX2a(1)  ------>ZmHOX2a(2)          <---------TOE2(3)              <-------------          ==========================HOX2a_HOX2a   <----------DOF2--------->YAB1        <------------- --------DOF2     <---------TOE2(3)    *TSS------------>CBF --------->AHL20(2)       ------>NtERF2 <-   ctttctgggttcctgaaattgagatatctgatcgatcatacaaatttcaattctttttgagattatatcacaatgtcccattttctcggcctaaatttgg  2995700                         <---------AHL20(2)                     <---------YAB1                    --------->AHL20(1)                    <---------AHL20(1)                    <---------AHL20(2)                    --------->AHL20(2)                   --------->AHL20(2)                  <---------YAB1                --------->YAB1                <---------ICU4 <---------MYB52(1)--------->YAB1 -MYB83        --------->ICU4                      --------------------->WRI1   --------->AHL20(2) -MYB46(1)  <---------YAB1                        <---------ARR14(2)     --------->ANAC58 -->MYB59   ------>ZmHOX2a(1)           <---------At5g28300              --------->ANAC58  ---------- ----AGL2   --------->ICU4             <-----------GT1             <---------LBD16    --------->AHL20(2) ----AGL3---------->ID1 --------->AHL20(2)        --------->ARR14(2)--------->ANAC46  <---------AHL20(2) --------ANAC46<---------YAB1         <---------YAB1             --------->ETT(2)<---------AHL20(2)   tccgtttatttgtccttattattatattaaatacttgtttattacagcctcgtatttgtatgttttgtctacggcaagcattttaaatttaaacaaagag  2995800                                                                        ----------->HVH21   <--------                                                                       <-----------HVH21 <---------WOX13(1)                                       <----------DOF2           --------->TOE1(2)     --------->ATHB12                            ------>ZmHOX2a(2)                  ------>MYB46(1)        --------->ICU4                           <---------At4g35610                 ------>MYB83    --------->CCA1(2)        --------->CCA1(2) --------->ARR14(2)                 <---------MYB59  <---------ARR14(2)       <---------ARR14(2) <---------ARR14(2)              <-----------GT1     --------->ARR14(2)   <- >DOF2 --------->ARR14(2) <---------AGP1         <------ZmHOX2a(2)    --------->ANAC46<---------YAB1<   agagacacagatatgagatgattttttggatctgtctctctcttttttgggatcattttttaaccaaactacgagtcacagatatgagatgattgatgtt  2995900                  <---------HSFB2a(1)                  --------->HSFB2a(1)                  --------->HSFC1(2)                  <---------HSFC1(2)            ------->TEIL          <---------ZAT14          --------->ZAT14                                                       <---------LBD16     <---------ZAT2                                                     --------->LBD16     --------->ZAT2    <---------HSFB2a(2)                            <---------LBD16     <---------At4g35610                                            <---------ARR14(2)     --------->At4g35610                                            --------->ARR14(2)    ------->TEIL <---------ARR14(2)                              --------->ANAC58    --------->GLK1(2)  --------->HSFB2a(2)           ------->TEIL--------->ANAC46 -TOE2(3)----------->HVH21                      --------->YAB1   --------->ANAC58         --------->ZAT18 ----------GT1<---------MYB59                  <---------YAB1    --------->ANAC55(2)      <---------ZAT18 ---------TOE2(3)--------->ARR14(2)          --------->YAB1     <-----------------AGL1---------->CDC5   ttaacgaagctgtgaaccgaattttccaaaacattgaaattacacaagtatgatgaacctattgtttacgaaaccggaaaactcgggcttagggcccaat  2996000                                                                                         --------->AHL20(2)            ---------->DOF2                                                              <---------AHL20(2)       ----------->GT1               --------->ANAC46                              <---------At4g35610       <------NtERF2           --------->WRKY38(1)                    --------->MYB52(1) <---------YAB1      ----------->GT1          --------->WRKY12           <----------DOF2          --------->At4g35610     <---------ANAC46  --------->ANAC58                  <---------DAG2          <---------WRKY12    <---------LBD16    --------->ANAC58    --------->TOE1(2) --------->AHL20(2)<-----------HVH21   agtagaggcggataaaaagaaatgcaggcccatttgaccacaaaacgttggagattgccccttttaaataagaaacgaaggggtcagctatataattgaa  2996100  Previous    Next  AGI:  At3g09760.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G03180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18146.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain Zinc finger, variant RING-type; (InterPro:IPR011016) Range:  from: 2992659    to: 2995639    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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