Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->ATHB51                                                                                      <---------ICU4                                                                                     --------->ICU4                                                                                     <---------YAB1                                                                                   --------->YAB1                                                             <------ZmHOX2a(1)     <---------ICU4                                                            ----------->GT1       <---------YAB1                                                           <---------TOE2(3)    --------->YAB1                                                    --------->ALFIN1            <---------ICU4           ----------->GT1                     <------ZmHOX2a(1)               <---------YAB1          --------->DAG2          --------->ANAC55(2)--------->ZAT18           --------->ICU4         ---------->DOF2          <---------ANAC55(2)--------->ZAT14         --------->YAB1 --------->DOF2     --------->TOE2(3)  --------->ZAT6<---------ZAT14      --------->YAB1 <-----------GT1   gataaagaacataaagttataatctaaatcacaaatacttaacacaagaggagagtgtagtaaggaaaaaaatcaaaaatcataatcataatttccacat  2970000                                         --------->YAB1                                          <---                                     <---------------AGL15             <---------WOX13(1)     <------                <---------TOE1(2)--------->TOE1(2)                ----------->GT1         --------->ANAC46      ------>MYB83--------->TOE2(3)  --------------->AGL15  --------->REM1(1)      <-----------GT1  -      ------>MYB46(1)            --------->TOE2(2)     <---------TOE1(2)    ---------->DOF2  <-------   ttcagaccaaataactccaacgtttataagaaaaaactacgaattatagcaacttcgtagcttcaacagggtgattaacaaagtattactacacgacgta  2970100                                ------>NtERF2               <------NtERF2                               <---------ETT(1)             --------->ANAC58                            -------->P                     ----------->RAV1(1)                            ------>MYB46(1)            --------->ANAC58                            ------>MYB83          <----------ID1         --------->LBD16      --------->AtLEC2    ------->GAMYB   <---------DOF5.7(2) ---------->DOF2     --------->WOX13(1)   --------->AtMYB61      --------->RAP2.6(3)  --------->MYB52(1) ------YAB1              --------->MYB46(3)<-----------------AGL1    <---------ARR14(2) ---SPL7               <-----------GT1    --------->MYB52(1)--------->ANAC58<---------KAN4(2) ------>TEIL    <---------MYB52(1)   --------->LBD16   --------->ANAC58<---------LBD16              < --ANAC46      --------->TOE2(3)<---------ALFIN1--------->MYB52(1)   --------->ARR14(2)             -   tgaatgtcattcaaatcccttaattcaaccatcccgacccgagataacgaaaacggcaaggcaccaaagagaaaccggaataaacaaaaaaaacataaaa  2970200                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                      --------->SPL7                                                                                      ------->TEIL           ----------->RAV1(1)                                                      <---------SPL7          --------->ANAC46                                                         <---------ANAC58          <---------ETT(1)             --------->At4g35610                         <---------ANAC58    ================================HOX2a_HOX2a                                   --------------->AtSPL3    ------>ZmHOX2a(1)                  <---------LBD16                            --------------->AtSPL8   --------->TOE2(3)                ---------->DOF2           ---------->DOF2  <---------ARR14(2) ---------ARR14(2)                --------->YAB1           --------->YAB1      --------->ARR14(2)   - -------->ARR14(2)           <------ZmHOX2a(2)--------->CCA1(2)               <------ZmHOX2a(1)   ---   caaatcctaaacccgacataacaaaaacacgatcacttataagcggagagatgagactgaaacataaagagtctaagagaggataccgtaccccatgttg  2970300        ----------->GT1      <------NtERF2     ------>NtERF2    <---------ANAC46   <------NtERF2  <---------ERF1  <---------RAP2.3(1)  <---------ATERF1(1)  ------>NtERF2--------->DAG2  <---------RRTF1(1)  <---------DEAR4(2) <---------RAP2.3(2)                           ------>NtERF2                                --------- <---------DEAR3(1)                       ---------->DOF2                             --------->YAB1 <---------RAP2.3(3)         --------->ZAT2--------->DAG2     <---------ANAC58       <---------ZAT6 <---------RRTF1(3)          <---------At4g35610<------NtERF2 <---------ANAC58    <---------STY1(1) -------->ATERF1(1)     --------->CCA1(2)---------->DOF2     <-------TEIL   *TSS--------->TOE2(3) --- ------>ETT(2)---------->DOF2--------->At4g35610----------->HVH21       ----------->GT1   -----------   acgacggcgcgagtgaaaaagtcgagagatgagctgaaactgctaaaggcgcgacgttttaagttcgtgagagattgaaaaaccctagtgataagaaaat  2970400                                                                                          <---------AHL20(2)                                                                                        <---------YAB1                                                                                   -------->HAHB4                                                                                   <---------ICU4                         <-----------HVH21                                 <----------ID1 --------->AHL20(2)                        <---------O2                                --------->ATHB12 <---------YAB1                        --------->O2                          --------->AHL20(2)   --------->YAB1                        --------->TGA1a                       --------->YAB1      <---------ATHB12  <-----------TBP       <---------TGA1a                      <---------ATHB12--------->At5g28300 >AHL20(2)<---------ANAC58                               ------------>CBF  --------->ANAC46 -------->GT1   --------->WRKY18(1)                      <---------ZAT14 --------->MYB52(1)   <------ >GT1     <---------ANAC58     --------->ZAT18  <-----------GT1  <------------CBF --------->ICU4   aggtatatataggcttgggtcaagactcgtgagagccctggtttaggcattaaccggtctgcaatgaaattgattaaacggcaaatgattatttttatat  2970500                                                                  ----------->GT1                                                                  --------->LBD16                                                                 <---------ANAC55(2)                                                                <---------LBD16                                                             -------->HAHB4                                                             --------->YAB1                                                            --------->ICU4                                                      <---------TOE2(3)                                                      <---------TOE1(3)               --------->ANAC55(2)                                                   ------>ZmHOX2a(1)                  <---------ANAC55(2)                                                --------------->AGL15                 --------->ANAC46                               ------->GAMYB    <---------------AGL15        <---------ANAC58                         <-----------HVH21     <-----------------AGL1        <---------ANAC58<-------                      <---------ANAC55(2)      <-----------------AG          <---------ANAC46-------- ---YAB1          <-----------HVH21  --------->AHL20(1)----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttgggcttaacaagaaggcccatcacatgtcaacccaaatattatgccaactccttaaggtaataatacgggaaaaatgtcgttttatacgtgaacttta  2970600                                                            --------->MYB46(3)                                          --------->YAB1   <xxxxxxxxxxxxxxxxsmallRNA(s)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <---------ANAC58              <---------WRKY18(1)                           <---------ANAC58             ----------->HVH21               --------->ANAC46  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        ---------               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->WRKY38(1)                 ---------               --------->ANAC58xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ANAC46     ---------              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->WRKY12                   <xxxxxxxxx              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->DOF5.7(2)     <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)--------->WRKY45       <---------YAB1------>NtERF2 ---DOF2 --------->AHL20(2)<-----------RAV1(1)  --------->YAB1     <-----------HVH21  --------->WRKY38(1) ->TOE2(3)<---------AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------MYB46(3)<---------YAB1-----   aaaaatggccatttaatacgaaaatttttgtgtggccaaataaaacataataaaaacgttgaccggccgtttcacacaaatattattgttgactacgcca  2970700                            <---------ARR14(2)                       --------->MYB52(1) <---------MYB52(1)                <----------DOF2          <-------GAMYB                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------YAB1--------->ARR14(2)                                           <---------AHL20(2)             <---------ARR11(3)  <---------MYB52(1)                                     <----------DOF2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <---------bZIP60(1) >ANAC58   <---------MYB52(1)  ----------->GT1    ----------->GT1                 --------->O2 >ANAC58  <---------RAP2.6(3)<------ZmHOX2a(2)   ------->MYC3                     --------->bZIP60(1) >ANAC46  <-------GAMYB<---------DOF5.7(2)--------->DOF5.7(2)                  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxsmallRNA(s) --------->TOE2(3)   <---------ANAC46                      <xxxxxxxxxxxxxxxxsmallRNA(i) ----->DOF2--------->DOF5.7(2)------>ZmHOX2a(2)  <-------MYC3    --------->LBD16  <---------O2   aagtctccatgccgttatctttcattaacggatccgttaattccgttaacacatgttaattagtttccgtcaatactcaaaacgacgtcgttttattgaa  2970800                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   ------>ZmHOX2a(1)                x                                <---------ARR11(3)         ------>ZmHOX2a(1)                       xx                                --------->GLK1(2)         --------->TOE1(3)                       xxx                               <---------GLK1(2)          --------->TOE2(3)                     <xxxx                ------>ZmHOX2a(1)                      <---------ARR14(2)             <xxxxxxxxxxxxxx               --------->TOE2(3)--------->ARR11(3)     --------->ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->YAB1  --------->ATHB12          <----------ID1   --------->TOE2(3)   <xxxxxxxxxxxxxx   atcaaaaaatcaaaattcctaaaattgatttcaaaatctctaaattccaaaaaaacaaatccttaattcctaaattccaaaaatcaaatccctaaattct  2970900  Previous    Next  AGI:  At3g09680.1    Description:  40S ribosomal protein S23 (RPS23A). Identical to 40S ribosomal protein S23-1 (RPS23A) [Arabidopsis Thaliana] (GB:Q9SF35;GB:Q8LG36); similar to 40S ribosomal protein S23 (RPS23B) [Arabidopsis thaliana] (TAIR:AT5G02960.1); similar to unknown [Populus trichocarpa] (GB:ABK93759.1); contains InterPro domain Ribosomal protein S12/S23; (InterPro:IPR006032); contains InterPro domain Ribosomal protein S23, eukaryotic/archaeal; (InterPro:IPR005680); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 2969050    to: 2970376    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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