Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->WOX13(1)     --------->TOE2(3) ------At4g35610                                  ---------->DOF2 ------ZAT2                                  --------------->AGL15 ----->At4g35610                           <---------At5g28300             <---------MYB52(1)       - ----->ZAT2                               <-----------GT1              -------->P           <-------- ------>RAV1(1)                         <---------WOX13(1)        --------->WOX13(1)      <---------MYB46(3) ------RAV1(2)                        --------->ATHB12      <---------ANAC58          <---------AtMYB61 >ANAC46--------->YAB1              <---------WOX13(1)      <---------ANAC58      <----------DOF2   <   gcagaaacattaatcaagttcaattgatcaatatgtcgattgatttactgtttaaaggcatagtgtgtctatcaacccttaagtctttttggtggatagt  2955800                                 <---------TOE2(3)                                --------->MYB52(1)                             --------->TOE2(3)                             ------->GAMYB       --------->ANAC58      --------->TOE1(3)                                                      <       --------->ANAC58    -------->P                                                               - -------->At4g35610     <------ZmHOX2a(2)                                                    -------- -ARR14(2)            --------->WOX13(1)                                               ------>ZmHOX2a(1) ---------At4g35610  <---------ETT(2)                ---------->DOF2---------->DOF2    ==============   gaagctcaaacccaattcaaatgtcgatcaaccctaacgtttttgtgctcgatagtaaagcatgagtataaaaagaacgtcgcttcttcctacaatcaca  2955900                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)                                                                 ------->TEIL                                                                <---------CCA1(2)                                                            <---------ANAC58                                                            <---------ANAC46                                                            <---------ANAC58                                                        <-------PIF5                                                        <-------MYC4                                                        ------->PIF5                                                        ------->MYC2                                                        <-------MYC2                                                        ------->MYC4                                                        ------->MYC3                                                        <-------MYC3                       <------MYB46(1)                 --------->TGA1a               --------->ATHB12                        <---------O2              <---------YAB1----------->RAV1(1)        --------->O2  --------->ATHB12     <------MYB83                    --------->ANAC55(2) <------ZmHOX2a(2)    --------->MYB111(1)              ============================================== ---------ARR11(3)    <---------------AtSPL8           <---------TGA1a<---------MYB52(1) -------->ARR11(3)    --------------->AtSPL8           <---------ANAC55(2)                    <------ ->YAB1     <----------DOF2--------->REM1(1)      ----------->HVH21 <-----------RAV1(1) <---------YAB1 =======HOX2a_HOX2a--------->MYB52(2)   <------ZmHOX2a(1)--------->ALFIN1            <---------YAB1   cagatcatttgaagctttgattagttggtacaacatactcgaggaatacagaatgacacgtggtgtgtatctgttggataaatttgtattattcttcttt  2956000                       <------NtERF2                      ------>NtERF2                     --------->ANAC58                     --------->ANAC58                    ------>NtERF2                    --------->ZAT18                   <---------ANAC58            <---------HSFC1(1)            --------->HSFB2a(2)            --------->HSFC1(1)            <---------HSFB2a(2)      <---------MYB46(3)      <------MYB83 <---------ANAC58                       --------------->AtSPL3      <------MYB46(1)<------NtERF2                      <---------WRKY18(1) <---------TOE2(3)--------->ATERF1(1)                <---------ICU4                                <- ====bZIP_DOF   <---------DEAR3(1)  <----------DOF2  --------->YAB1                                -- ----DOF2  <---------LBD16       ------>ZmHOX2a(1)  <---------ATHB12   ---------->DOF2----------->GT1   actatggatggtttctggaaggcgcgccaagagtccttctttttccatctacaaatcatgaccgtccatctccaaaagaagactgaaacagtgaaactag  2956100                                             ---------->DOF2                                        --------->ARR14(2)                                        <---------ARR14(2)                                        --------->ZAT14                                        <---------ZAT14                                <---------ANAC46                                      --------->LBD16                             --------->YAB1                                     <---------ANAC55(1)                          <---------ICU4                                     <---------ANAC55(2)                          --------->ATHB12            --------->YAB1           <---------ANAC46                            <---------YAB1        <---------YAB1        <------------CBF      --------->MYB46(3)           <---------ATHB12  <-------TEIL--------->At4g35610   ------>ZmHOX2a(2)        *TSS             ------>ZmHOX2a(2)  ---- --------HSFC1(2)           --------->AHL20(2) ----------->GT1            ----------->HVH21      ---- ------->HSFC1(2)           <---------AHL20(2)<---------TOE2(3)  <----------DOF2 <------ZmHOX2a(2) <-   aagcttcattttgatcatcagccagttttataaattgatccgtatactaaagtaacaactactagcactttcttctgtgatcgatcattgtgtttaaact  2956200                                                                                              -------                                                                                           <---------ARR14(2)                                                                                           --------->GLK1(2)                             ------>ZmHOX2a(2)                                <---------HSFB2a(2)                           --------->ARR11(3)                                 --------->HSFB2a(2) ------>DOF2         <---------YAB1 <------MYB83  <----------DOF2             <---------HSFC1(1) ----->MYB52(1)     --------->YAB1  <------MYB46(1)  <---------TOE2(3)    --------->GLK1(1)--------->ARR14(2) --------TOE2(3)    --------->TOE2(3)<---------GLK1(2)      ---------->DOF2   --------->HSFC1(1)   --   aaaggtttgtatgttcttgtaatcttattgatctcgataggttctccattctctttaggttttaaagccttcaacgatttccagaaggaagcgaatttga  2956300                                                                                 <---------YAB1                                                                           --------->LBD16                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                      <---------HSFC1(2)                                                                      --------->At4g35610                                                    --------->ZAT14   <---------At4g35610          <-                                                    <---------ZAT14   <---------HSFB2a(1)          <-                      --------->LBD16          <---------At4g35610    --------->HSFB2a(1)          --                     --------->ANAC58     --------->ANAC58            --------->HSFC1(2)     --------                     --------->ANAC46     --------->ANAC46            --------->ZAT2         --------    ----------->GT1  --------->ANAC58     --------->ANAC58            <---------ZAT2     ------>NtERF2 ---->GT1           <---------LBD16<---------------AtSPL8          <------ZmHOX2a(1)    --------->LBD16 ------->AHL20(2) -------->P ---------->DOF2---------->DOF2 <-------TEIL  <---------ANAC46 ----------   aaaaaatggtgaagaagagttacccggaagtgaaagaagagtacaagaaagctgttcagagatgcaagaggaagctccgtggtcttattgccgagaagca  2956400                                 ------>ZmHOX2a(1)                              <------ZmHOX2a(2)                             <---------GLK1(2)                             --------->ARR14(3)                             --------->ARR11(3)                             --------->ARR14(2)                             <---------ARR11(3)                             <---------ARR14(2)                             <---------ARR14(3) <---------At4g35610       ----------->ARR10 <---------ZAT18          --------->SPL7 --------->At4g35610   <---------ANAC58 --------->ZAT14       <---------ANAC58 --------ZAT14         <---------ANAC46 --------ZAT18         <---------ANAC55(2)                          <---------ZAT14      <---------ANAC58 ------->ZAT14         --------->ANAC55(2)                   <---------ZAT6              <---------ANAC58 ->ANAC58     ========================HOX2a_HOX2a          <---------At5g28300      --------->ATHB12 ->ANAC58     ------>ZmHOX2a(1)------>ZmHOX2a(2)         <---------MYB52(1)<---------MYB46(3) >DOF2        =======================HOX2a_HOX2a  <----------DOF2 <---------ZAT14 <---------WOX13(1)   ctgtgctcccatcgtcctccgtcttgcgtaagatcctctctctggttccagtcttttctgttactgtgagtactgagttgttcgattgatggcttctcag  2956500               ----------->ARR10              <------NtERF2            ----------->HVH21             --------->LBD16       --------->ZAT2            <---------ANAC46       --------->At4g35610           <---------LBD16         <---------At4g35610           <------NtERF2<---------At4g35610                               <---------MYB52(1)         <---------DEAR3(1)        <---------ZAT2                    <------ZmHOX2a(1)      <-----------RAV1(1)          ----------->RAV1(2)            <------ZmHOX2a(1)  <---------ARR14(2)    --------->At4g35610                    <-----------RAV1(2)    --------->DAG2   agcatattttgttggcggaaatttgcagatggcactcggctgggacatttgatgtgaagacgaagacaggaggaccgtttgggacgataaggcatcccca  2956600                                                                                                   --                                                                                     <---------At4g35610                                      <---------MYB52(1)       <---------At4g35610   --------->At4g35610                       --------->ARR11(3)        <---------WRKY18(1)  ----------------->AG       <---          <---------ICU4             <-------GAMYB             --------->At4g35610<---------At4g35610         <---------ATHB12            <---------RAP2.6(3)<---------ATHB12      <-----------HVH21------   agagctagcccatgatgccaacaatggtcttgatattgccgttaggcttcttgaccctatcaaggagctgttccctattctgtcatatgctgacttctac  2956700  Previous    Next  AGI:  At3g09630.1    Description:  60S ribosomal protein L4/L1 (RPL4A). Identical to 60S ribosomal protein L4-1 (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO22101.1); similar to 60S ribosomal protein L4 (L1) (GB:Q9XF97); similar to unnamed protein product [Vitis vinifera] (GB:CAO18048.1); contains InterPro domain Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); contains InterPro domain Ribosomal protein L4/L Range:  from: 2953748    to: 2955718    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g09640.1    Description:  APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase. Identical to L-ascorbate peroxidase 2, cytosolic (APX2) [Arabidopsis Thaliana] (GB:Q1PER6;GB:Q39006;GB:Q67XB1;GB:Q9SF39); similar to APX1 (ASCORBATE PEROXIDASE 1) [Arabidopsis thaliana] (TAIR:AT1G07890.8); similar to APX1 (ASCORBATE PEROXIDASE 1) [Arabidopsis thaliana] (TAIR:AT1G07890.7); similar to APX1 (ASCORBATE PEROXIDASE 1), L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT1G07890.5); similar to unknown [Populus trichocarpa] (GB:ABK93180.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); Range:  from: 2956161    to: 2958332    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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