Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->GLK1(2)                                   <---------TOE2(3)                               <<<<<<<<<<AGL22                               <<<<<<<<<<AGL20                            <-----------------AGL1                            <---------------AGL15                            --------------->AGL15                            <-----------------AG                           ----------------->AGL1          --------->At4g35610  <<<<<<<<<<AGL24  --------->ATHB12          ----------->RAV1(2)<---------------AGL15          <---------ZAT2   <-----------------AGL3                         <------ZmHOX2a(2)          <---------At4g35610--------------->AGL15                       <---------ARR11(3)    --------->ARR11(3)     <-----------------AG<---------YAB1            --------->ARR11(3)    <---------ARR11(3)     ----------------->AGL2                  --------->AtLEC2    <-----------ARR10      <-----------------AGL2             <-----------GT1 -------->GT1              ----------------->AGL3         --------->ARR11(3) ------ICU4           <---------ALFIN1 ---------->DOF2    <---------AHL20(1)          <---------GLK1(2) -----ATHB12       <------ZmHOX2a(1) <------ZmHOX2a(1)    --------->AHL20(1)        --------->ICU4  -   cagtaatatctcacctgcttaggagcacttccatatttaggaaaagaatatgatttgaaatattttgccattcaagatcgagactaaagattatttgaac  2953300                                <---------ANAC46                                <---------ANAC58                               --------------->AtSPL3                               --------------->AtSPL8                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <---------TOE2(3)                       ------->GAMYB                                                     ----------->HVH21                    <-----------GT1          --------->YAB1                 ----------->HVH21                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->WRKY12                    <---------DOF5.7(2)   <----------DOF2    <-----------GT1--------->ETT(2)                 <----------DOF2<---------ANAC58<---------ICU4<<<<<<<<<GATA-1     <---------MYB52(1)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <----------DOF2     --------->WRKY38(1)            <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             --------->DEAR3(1)     <-          <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <---------ETT(2)   <-----       <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->DAG2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------->ID1 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <-----------GT1<---------AHL20(2) <----------DOF2   tataaagcaaattttcactctttaacgctccatttcgtacattactttgatcatttttctttttatctatttttttcgtcgaccgttttctttgacgatg  2953400                                                                              --------->AHL20(2)                                                                         --------->AHL20(2)                                                                         <---------AHL20(2)                                                                     --------->AHL20(2)                                                                     <---------AHL20(2)                                                                 --------->AHL20(2)              ---------->DOF2                                    <---------AHL20(2)      <---------YAB1                                         <---------AHL20(2) --------MYB46(3)                                            --------->AHL20(2) ----YAB1   <---------HSFB2a(2)                          --------->AHL20(2)   <---------AHL20(2)   <-   tttgttatatgattctaaaagcatccacaatggtagactcttagcaaaactcttaacaaatatttaaaaaattatataatttaaatattagataaatctc  2953500               --------->MYB59                                               <---------DOF5.7(2)     <------MYB83                                                         --------->TOE2(3)       <--     ----------->GT1                                                      <-------GAMYB           ---     <------MYB46(1)                                            --------->ZAT18     ---------->DOF2    --------->MYB59          <---------MYB52(1)               --------->PCF2 ---------->DOF2     <--- --------AHL20(2)  <---------WRKY12   <----------ID1        --------->MYB59--------->DOF5.7(2)<------   ttaaatttggtaaaacttaggtcaattgtctcttagttaagagacaaatagtcgggttttattaggcccactagttcgttaaaggctaaagcagtgcccg  2953600       <---------ANAC46      <---------LBD16                                       <------------CBF   ---------->DOF2                                     ----------->GT1          --------->ZAT18    -- <---------YAB1    --------->AHL20(2)                  <------MYB83<----------DOF2  <---------ATHB12 -------ARR14(2) --------->TOE1(3)                     <------MYB46(1)   <---------AHL20(2)        -- ------>ARR14(2) --------->TOE2(3)        ----------->GT1  --------->ATHB12   --------->PCF2      --- ------MYB52(1)  <----------DOF2       ---------->DOF2 <---------ANAC46 --------->YAB1     <---------At4g35610 ---LBD16  ----------->GT1   <---------ZAT18          --------->MYB59  <---------YAB1      --------->At4g35610   gttcttatagcggaggtaactttaaatattgggcccttactgaaaggtaaattagttgggtttattgggctttattataaggcccactaattcagcagta  2953700                                                   --------->TOE1(3)                                                   --------->TOE2(3)    --------->ANAC58                            *TSS    --------->ANAC58                  ----------->RAV1(2)    --------->ANAC46                  --------->At4g35610  --------->MYB52(1)                  <---------At4g35610 ------->TOE1(3)                      <---------ZAT2                        --------->CCA1(2) ------->TOE2(3)                      --------->ZAT2                   ---------->DOF2 ------>ZAT6                        <-----------RAV1(2)       ---------->DOF2   accctaacgaaaccctagcatatattagttcttaaacttcagctgagagaaaaccctaatttctcaaagagtctaaagagacggagagtgagagaagaga  2953800                             <---------ZAT2                          ------>NtERF2                         --------->DEAR3(1)                         --------->RAP2.3(2)                         <---------DEAR3(1)                        <------NtERF2                        --------->ATERF1(1)                        --------->RAP2.3(1)                        --------->DEAR4(2)                       <---------RAP2.3(1)                       ------>NtERF2                       --------->ABI4(1)                       <---------ATERF1(1)                      --------->RAP2.3(3)                      --------->RRTF1(2)                      --------->RRTF1(3)                      --------->RAP2.3(2)                      <---------ALFIN1                      --------->ANAC46                      <---------DEAR3(1)                      <---------ATERF1(2)                      --------->RAP2.6(2)                      --------->ATERF1(2)                      --------->DEAR3(1)                     --------->DEAR4(2)                     --------->RRTF1(1)                     --------->ERF1                     <------NtERF2                     --------->RAP2.6(1)                     --------->ATERF1(1)                     --------->RAP2.3(1)                     --------->ORA47(2)                    <---------DREB2C(1)                    <---------DEAR4(2)                    <---------ATERF1(1)                    <---------RAP2.3(1)                    ------>NtERF2                    <------NtERF2                    --------->ATERF1(1)                    --------->DREB2C(1)                    --------->At4g35610         ------>MYB46(1)                    <---------At4g35610  <-----------TGA1                                   ---------                   --------->DEAR3(1)   --------->ANAC46                                   --------->DEAR3(1)                   <---------ATERF1(2)  <---------TGA1a            <---------bZIP60(2)------>ZmHOX2a(1)                   --------->ATERF1(2)  --------->TGA1a       ----------->GT1  <---------ATHB12                   --------->RAP2.6(2)  --------->O2   --------->TOE2(2)       <------ZmHOX2a(2) ----                   <---------DEAR3(1)   <---------O2   --------->TOE2(3)--------->ETT(2)<---------ALFIN1                   --------->ANAC46     --------->bZIP60(1)   <------MYB83  --------->DEAR3(1) <-----                  <---------RAP2.6(2)------>ZmHOX2a(1) --------->TOE1(2)--------->ZAT18--------->MYB46(3)       --------->HSFB2a(2)--------->At4g35610   ------>MYB83  <------MYB46(1)  ==============HOX2a_HOX2a       <---------HSFB2a(2)<---------At4g35610   --------->AtLEC2----------->HVH21--------->WOX13(1)   gaaacatttcgagacaaatggccgccgccgctgctcgtcctctcgtcaccatccaaaccttggatggtgacatgtccaccgatcaatcctccaccgtcgt  2953900                <------NtERF2                --------->ATERF1(1)                --------->RAP2.3(1)                --------->RRTF1(1)               ------>NtERF2               <---------RRTF1(1)               <---------DEAR4(2)               <---------ORA47(2)               <---------RAP2.3(1)               <---------ERF1               <---------ATERF1(1)              <---------RAP2.3(2)              <---------RRTF1(3)              <---------RRTF1(2)              <---------RAP2.3(3)              <---------DEAR3(1)              --------->bZIP60(1)              <---------bZIP60(2)              <---------bZIP60(1)             --------->RAP2.6(3)            --------->MYB52(1)        --------->TGA2(2)       <-----------HVH21       <-----------TGA1                                                             --------->ANAC58      --------->bZIP60(1)                                                         <---------ALFIN1      --------->TGA1a                                                      --------->ATERF1(1)      --------->ANAC58                                                     <---------MYB52(1)      <---------TGA1a                                                      <------NtERF2      <---------TGA2(1)                                                   <-----------HVH21      --------->TGA2(1)                                                   <---------RAP2.6(3)      <---------O2                                                       --------->ATERF1(2)      --------->ANAC46                                                   <---------ATERF1(2)      --------->O2                                                       --------->RAP2.3(2)      --------->bZIP60(2)                          --------->ANAC58      --------->RAP2.3(3)      --------->ANAC58                             --------->ANAC46    --------->At4g35610      <---------bZIP60(1)                          --------->ANAC58   ------->GAMYB --------->ANAC46    ------>NtERF2--------->DEAR3(1)              <---------DOF5.7(2) <---------MYB55(2)   --------->LBD16------>NtERF2                --------->DOF5.7(2)   --------->MYB46(3)   --------->ANAC46<------NtERF2               <-----------HVH21   ----------->RAV1(1)  <---------SPL7  --------->HSFB2a(2)                   <---------DOF5.7(2)       --------->MYB46(3)--------->ANAC58  <---------HSFB2a(2)                 --------->DOF5.7(2)       ----------->RAV1(1)--------->SPL7 ------------>WRI1----------->RAV1(1) <---------MYB52(1)  <---------ARR14(2)     <---------SPL7 ----->SPL7----------->HVH21         --------->TOE1(3)    --------->ARR14(2)--------->SPL7 ----SPL7  ----------->TGA1          --------->TOE2(3)   <---------CCA1(2)<-----------TGA1   acttcccgacgtcatgacggcgccagttcgaccagacatcgttaacttcgttcacgcccaaatctccaacaacagccgtcagccatacgccgtatcgaag  2954000                                                 <---------ANAC46                                               <-----------HVH21                                            <---------bZIP60(2)                                            <---------TGA1a                                            <---------O2                                        <-------PIF5                                        ------->PIF5                                       --------->TGA1a                      <---------SPL7          <                    --------->DEAR3(1) <---------TGA1a--------->ARR14(2)  <---------AtMYB61         <                  ------>NtERF2        <---------ANAC58                   <---------------AtSPL8    <                  --------->LBD16      <---------bZIP60(2)              <---------MYB46(3)         <-                 --------->DEAR3(1)    <---------ANAC58                --------->ALFIN1--------->ZAT2               <---------ATERF1(1)    --------->SPL7  <---------ARR14(2)--------->MYB55(2)      -----              --------->AtMYB61 <---------ARR14(2)   <---------CCA1(2) <---------DEAR3(1)       <----            <-----------ARR10   --------->ARR14(2) --------->ANAC55(2) <---------AtMYB61        -----        --------->At4g35610 --------->LBD16 <---------ANAC58         --------->LBD16   <---------ZAT2        <---------At4g35610 <---------LBD16 <---------ANAC58        --------->LBD16   --------->ALFIN1      <---------WRKY38(1)  ------>ZmHOX2a(1)<---------ANAC55(1)    <---------LBD16<---------At5g28300    <-----------HVH21     <---------LBD16   <---------ANAC46 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<----   <---------DEAR3(2)------>NtERF2  --------->LBD16<---------ANAC55(2)<---------MYB52(1)    ---------   aaggccggtcaccagacctccgccgagtcctggggaaccggacgtgccgtgtctcgtatccctcgtgttcccggtggtggtactcaccgtgctggtcaag  2954100                                                                --------->ATERF1(1)                                                                <------NtERF2                                                                --------->DEAR3(2)                                                            ------>NtERF2                                                           <---------ATERF1(2)                                                           --------->ATERF1(2)                                                         ------>NtERF2                                                         <---------ATERF1(1)                                                         <---------At4g35610                                                         --------->ZAT2                                                         --------->At4g35610                                                         <---------ZAT2                                                         ----------->RAV1(2)                                                        --------->RAP2.3(2)                                                       --------->RAP2.6(1)                                                       <------NtERF2                                                       --------->RRTF1(1)                                                       --------->ATERF1(1)                                                       --------->ORA47(2)                                                       --------->RAP2.3(1)                                                       --------->DEAR4(2)                                                      <---------RRTF1(1)                                                      <---------RAP2.3(1)                                                      ------>NtERF2                                                      <---------ATERF1(1)                                                      <---------ERF1<---------ANAC46                                                     <---------DEAR3(1)                                                     --------->DEAR3(1)                                                     <---------RAP2.3(2)                                                  ===================RAV                                                  <-----------RAV1(1)                                                 ------>ZmHOX2a(2)  <---------O2                                                --------->CCA1(2)   <---------ANAC58                                                <------ZmHOX2a(2)   --------->O2     ----------->GT1                           --------->AGP1<---------ABI4(2)     <------MYB83                              <---------AGP1<------NtERF2     <------MYB46(1)                           --------->ARR11(3)   --------->TGA1a    --------->MYB46(2)                         --------->ARR14(3)   <---------ANAC58    <---------MYB46(3)                         <---------ARR11(3)   <---------TGA1a    --------->MYB59                            --------->ARR14(2)  <---------MYB52(1)   <---------MYB55(1)                        ----------->ARR10 ------>NtERF2   --------->SPL7                          ===================================MYC_MYB  <---------MYB52(1)   <---------MYB46(3)  ------->GAMYB--------->DEAR3(1) <---------SPL7       <---------AtMYB61   <---------ATHB12--------->ATERF1(1) ---------ANAC58   --------->ALFIN1       xxxxxxxxxxxxxxxxx>smallRNA(le3)                          <- ---------ANAC58 <---------O2<---------TOE2(2) <---------ARR14(3) <-----------HVH21           ------- ---------ANAC46 <---------bZIP60(2)      --------->MYB46(3)<---------ATERF1(1)               ------- ------TEIL      <---------ANAC46        -------->P<---------ATERF1(1)                        ------- ---->ZAT2    <-----------RAV1(1)        =====================================MYC_MYB         ------- -----ZAT2   <-------MYC3    <---------TOE1(2) <---------ARR14(2)--------->DEAR3(1)           ------- ---->At4g35610  <---------ANAC58        ------>MYB46(1)<---------DEAR3(1)                    <------ -----At4g35610  <---------ANAC58  --------->At4g35610<---------ORA47(2)                  <---------- >WRKY18(1)  ------->MYC3  <---------SPL7------>MYB83<---------RAP2.3(3)                  <----------   ctgcgttcggtaacatgtgtcgtggtggtcgtatgttcgctccaaccaagatctggcgccgctggcaccgtcgtgtcaatgtcaacatgaagcgtcacgc  2954200  Previous    Next  AGI:  At3g09630.1    Description:  60S ribosomal protein L4/L1 (RPL4A). Identical to 60S ribosomal protein L4-1 (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO22101.1); similar to 60S ribosomal protein L4 (L1) (GB:Q9XF97); similar to unnamed protein product [Vitis vinifera] (GB:CAO18048.1); contains InterPro domain Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); contains InterPro domain Ribosomal protein L4/L Range:  from: 2953748    to: 2955718    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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