Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <----------DOF2                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                             <xxxxxxxxxxxxxxxxsmallRNA(s)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <---------ANAC58                            <---------ANAC58                            <---------ANAC46                           <xxxxxxxxxxxxxxxxsmallRNA(s)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxx>smallRNA(i)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(s)                    <---------MYB59<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   --------->ANAC55(2)                  <-----------------AG    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------YAB1                  <-----------------AGL1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------AHL20(2)                  xxxxxxxxxxxxxxxx>smallRNA(i)                    <---------AHL20(1)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->AHL20(1)                 <-----------GT1  ------>ZmHOX2a(2)               <---------AHL20(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->AHL20(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->YAB1               <----------DOF2   <---------WOX13(1)             <---------YAB1              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ATHB12    ----------->GT1             <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------AHL20(2)   --------->ANAC55(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <----------DOF2  <---------WOX13(1)    <---------ANAC55(2) -----DOF2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------YAB1          <---------TOE2(3) ---DAG2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ICU4 --------->AHL20(2) --GT1<---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------WOX13(1)<---------ANAC46   ttattctggttctggttctttacctatttggcttgatcgatacttttgtaatgactctaattgattaatataattgttttgacgtaaaaaaaaaaacata  2923300                                                             --------->TOE2(3)                                                            --------->ANAC58                                                            --------->ANAC58                                                            --------->ANAC55(2)                                                            --------->ANAC46                                                            <---------ANAC55(2)                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                   --------->YAB1      --------->REM1(2)                                  <---------YAB1     --------->LBD16                                 <---------AHL20(1)  --------->At5g28300                                 <---------AHL20(2) ------->GAMYB                          ----------                                --------->YAB1    <---------At5g28300                     --------->DAG2                    --------->AHL20(2)           <-----------GT1             <----------DOF2  <------       ----------->GT1         <---------YAB1  ----------------------->TaNAC69(2)     --------->YAB1   --------->ARR11(3)<---------AHL20(2)       --------->YAB1--------->ANAC55(1)  <----------DOF2 --------->ICU4 <---------TOE2(3)--------->AHL20(2) ----------->GT1       <-----------GT1---------->DOF2   gaaatgattttgtgaatttagatttatttgtttattataatgaaacaattttaaccgtgaatacgtaaatgatttttttctttctttatcgtaaagttaa  2923400                                                                   <-----------TGA1                                                                  --------->TGA2(1)                                                                  <---------ANAC58                                                                  <---------TGA2(1)                 <                                                                  --------->bZIP60(1)               =                                                            --------->DAG2                          -                                                   ----------->GT1<---------bZIP60(1)               <             <---------------AGL15                --------->DAG2  <---------ANAC58                 --             --------->HSFB2a(2)                ---------->DOF2   --------->ANAC58             ------             <---------HSFB2a(2)            --------------->AGL15 --------->ANAC58           --------             --------------->AGL15          <---------------AGL15 --------->ANAC55(2)       ---------            ================================================MADS_MADS                  ---------->DOF2            ----------------->AGL3         <-----------------AGL3 <---------ANAC55(2)  ==============         <----------DOF2                   ----------------->AGL3<-----------STF1   --------->AtLEC2<      <-----------GT1                    ------->TEIL     ------------>MYB.PH3(1)   --------->ANAC58- ->GT1<---------AHL20(2)       ----------->GT1<---------YAB1<---------TOE2(3)       --------->ANAC58- ---AHL20(2)<-----------------AGL2  --------->CCA1(2)     ---------->DOF2       --------->ARR11(3)<--   tttcttatttactttctaaaaatagtcgtaaactcgtgatatgaaactataaaaggtaaaaaaaggttacgtcatttcaaaaaatcatgcaaagcccaca  2923500       --------->PCF2       --------->TCP15(1)       <---------PCF2       --------->PCF5       <---------PCF5       --------->TCP20       --------->TCP16(1)      <---------TCP16(2)      <---------TCP23      ----------->TCP11(1)      <---------TCP15(2)    --------->ALFIN1  --------->ALFIN1 ------->MYC4 ------->MYC3 <-------MYC2 <-------MYC4                                                                                       - ------->MYC2                                                                                     <-- <-------MYC3                                                                               <-------- ---------TGA1a                                                                             <-------- ==============================================bZIP_DOF                                     --------- -------->O2                                                                                <-------- ---------ANAC55(2)                                                                         --------- ---------->OsbHLH66                                                                        <-------- --->ANAC46                                              ------>ZmHOX2a(1)                  <-------- ->ANAC46                                           <----------DOF2                         --------- >ZAT18--------->TCP11(2)                 <---------WRKY38(1)                               --------- =========bZIP_DOF                  ---------->DOF2 ================================================= ---------O2 ----------->GT1  <---------KAN4(2)   ------>MYB46(1)                           ========= -------->ANAC55(2)        ------------>CBF       ------>MYB83       --------->ANAC46  --------->MYB52(1) -------->TGA1a        <------------CBF   <---------WRKY12          ------>ZmHOX2a(1)  <---------DOF5.7(2) -------ALFIN1       --------->ARR11(3)  --------->WRKY18(1)------>ZmHOX2a(1)        --------->DOF5.7(2)   acacgtgtgggcccagagtaaaacatattggcaatattcaaaggtcaacaccaactttcctcctcgcttcctcaccacaaaatataagttaacgacgtcg  2923600 ---------->HVH21 --------DOF2 -O2     --------->REM1(2) -bZIP60(2) >bZIP60(1) -DEAR3(1) >bZIP60(2)          ----------->TBP -bZIP60(1)          --------->AHL20(2) -TGA1a  --------->ZAT14 >TGA1a  <---------ZAT14 >O2  <---------ANAC46   <-----------GT1   <---------ARR11(3) =bZIP_DOF      <---------ZAT6             --------->ARR11(3)                    <---------TOE2(3) ========bZIP_DOF    <---------YAB1 --------->MYB46(3)                       <----------DOF2   ctctaacgctgtgtagtagtcttataaataccccttcaacgactaaatcttctcccctcataaactctctcacaacttgcattatcgtttcaaaattttc  2923700                                                                                               ------                                                                                            ------->GAMYB                                                                                           --------->DEAR3(1)                                                                                           --------->ANAC46                                                                                         ---------->DOF2                                                                                         <---------ALFIN1                                                                                        <---------ALFIN1                                                                                <---------AtLEC2                                                                                <---------ANAC46                                                                                <---------ANAC55(1)                            <---------HSFB2a(1)            --------->ANAC58     <---------bZIP60(2)                            --------->HSFB2a(1)            --------->ANAC58     <---------ANAC58                            --------->HSFC1(2)   ----------->TGA1          <---------MYB46(3)  ------                            <---------HSFC1(2) --------->YAB1    --------->YAB1 <---------ANAC58                       <---------HSFB2a(2)     <---------ICU4   --------->ICU4  --------->ANAC55(2)                       --------->HSFC1(1)     <---------YAB1    <---------ATHB12<---------ANAC55(2)                       --------->HSFB2a(2)    --------->ICU4    <---------YAB1 <---------------------    ------->GAMYB  --------->ZAT18 --------->ANAC46       --------->DAG2   <-----------RAV1(1) <-----   --------->MYB46(3)------>ZmHOX2a(1) ------>NtERF2     ---------->DOF2   --------->MYB52(2) -------   tctcaacgacgaaaaactgagtcctctagaaatttccacgacgacttgatgatgacgagaaaagcaatgataaacatttgttgcgtggccacaacgccgt  2923800                                                                                          <---------YAB1                                                                                          <---------AHL20(2)                                                                                       <-----------ARR10                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                                     <---------MYB46(3)                                                                                    <---------ANAC46                                                                                   <---------LBD16                                                                                   <------NtERF2                                                          --------->GLK1(1)        ------>NtERF2                   ------>ZmHOX2a(1)                    <------NtERF2             <---------ATERF1(1)                ------>ZmHOX2a(1)  --------->ANAC58    <---------MYB46(3)         ------>NtERF2      <---------ALFIN1             --------->ANAC46    ------>NtERF2             <---------DEAR3(1)     --------->MYB46(3)  --------->TOE1(3)             <---------ERF1            --------->ANAC46   <---------ARR14(2)  <---------TOE2(2)               <---------RAP2.3(1)      --------->LBD16   --------->ARR14(2)  <---------TOE1(2)              <---------DEAR3(1)        <---------LBD16 >NtERF2 --------->AtMYB61--------->DOF5.7(2)         <---------RAP2.3(2)       --------->At4g35610 --->ORA47(1)  <---------ALFIN1    --------->ANAC58   <---------RAP2.6(2)     <---------LBD16 --TaNAC69(2)------>ZmHOX2a(1)   <---------ALFIN1    <---------LBD16        <---------ARR14(2) ----SPL7<---------ALFIN1--------->TOE2(3)         <---------DEAR3(1)       --------->ARR14(2) -->DEAR3(1)<---------ALFIN1<---------DOF5.7(2)  --------->ARR14(2)   --------->ATHB12<------NtERF2--   ccaagtatccacctcctcctcctcttacgttaacccctcgccagagtttggaatcggcggctatctatggagtcattgaatccgcggcggatataatcga  2923900                                                                                              ------>ZmHOX2a(2)                                                                                             <------ZmHOX2a(2)                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                           <------ZmHOX2a(1)                     <----------DOF2                           --------->ANAC58    --------->TOE1(2)                  <---------ALFIN1 <---------ANAC46            --------->ANAC58    <-------MYC2                 -------->P ---------->DOF2      --------->HSFB2a(2)               ------->MYC2                 ------>MYB83<---------TOE2(3)   <---------HSFB2a(2)--------->ICU4 ------->MYC3                 ------>MYB46(1)   <---------ANAC55(1)     --------->TOE1(3)       <-------MYC3    --               --------->AtMYB61   <---------ANAC58       ----------->RAV1(2)     <---------TGA1a  <- ------->CCA1(2)----------->RAV1(1)<---------ANAC58   --------->MYB46(3)  <-------TEIL----------->HVH21   gagatggaacactgagaccaacactttcgctaaagttacttgtatgttctacgagaacaaacctgaagccatgatgttcatcgaacgtgtgaaggatctt  2924000 ---ARR10 -ARR11(3) >ARR14(2)                    ------>ZmHOX2a(2) -ARR14(2)                   <------ZmHOX2a(2) >ARR11(3)                  --------->ARR14(2)         ------>ZmHOX2a(2) -ARR14(3)  <---------SPL7  <---------ARR14(2)        <------ZmHOX2a(2) >ARR14(3)------->TEIL     ==================================HOX2a_HOX2a ------->At4g35610         ===================================HOX2a_HOX2a --------At4g35610         <------ZmHOX2a(1) --------->GLK1(2)                               --------   cagaagacgatggacgtactcgtgagtgaggatccaaactctgagagactcttgagatcgcataagcttatgcaaatcgctatgaagaggttgcaaaaag  2924100                                                                                    --------->STY1(2)                                                                                    <---------STY1(2)                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                                --------->CCA1(2)                                                                               <---------ARR11(3)                                                                               <-----------ARR10                                                                               --------->ARR14(3)                                                                               <---------ARR14(3)                                                                          --------->LBD16                                                      --------->ANAC46   --------->ANAC58                                                   <---------ZAT14       --------->ANAC58                                        --------->LBD16   --------->ARR14(2)   --------->ARR11(3)                                --------->YAB1     <---------ZAT18       --------->HSFB2a(2)                       <---------ANAC58--------->HSFB2a(2)<---------ARR11(3)   --------->AGP1                       <---------ANAC58<---------HSFB2a(2)<---------ARR14(2)   <---------AGP1 -------         --------->GLK1(2)    --------->ARR11(3)   --------->ZAT14       <---------HSFB2a(2)  <------        <---------ARR14(2)   <---------CCA1(2)     --------->ZAT18       --------->ANAC46    --------        <---------GLK1(2)  <---------ANAC58      <---------ZAT18        <---------LBD16      <-------  <-----------GT1    ------->TEIL     ------>ZmHOX2a(2)   --------->ARR11(3)   <---------ARR14(2)   - -->DOF2--------->ARR14(2) <---------ANAC58--------->GLK1(2)------>ZmHOX2a(2)  --------->ARR14(2)  --   agttttaccagattctttcgatgaatcgtgcttatcttgatccagaatcagtgtccactcgatcttcacttacttccgcaagatctagctactcagattt  2924200  Previous    Next  AGI:  At3g09510.1    Description:  nucleic acid binding. similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT2G02650.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 2921810    to: 2923264    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g09520.1    Description:  ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding. similar to ATEXO70H3 (exocyst subunit EXO70 family protein H3), protein binding [Arabidopsis thaliana] (TAIR:AT3G09530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18086.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) Range:  from: 2923749    to: 2925635    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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