Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->AHL20(2)       ------>MYB46(1)                          --------->ARR11(3)                    <---------AHL20(2)     <---------MYB59                          <---------ARR11(3)             ------->GAMYB               ------->TEIL --------->RVE1(1)       <---------CCA1(2)            --------->MYB52(1)        ---------->DOF2  ---- >YAB1                 --------->AHL20(2)             <-----------GT1     ----------->GT1------>MYB83   aaaatatcgaagagactgccgaaaattatatctttgaaatcaactggtgaacatattaaccgaaaataaaatcgaagagaaaaaaagaacctaatctaag  2914900                                                                                                   --                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                              -------                                                                                            ---------                                                                                            ---------                                                                                <-------GAMYB--------                                                                                =====================                                                                               --------->MYB55(2)<---                                                                          --------->SPL7    <--------                   <----------DOF2                                       --------->MYB52(1) ---------               <---------ANAC46                                         <---------SPL7     <---------LBD16              --------->RAP2.6(3)                                      <---------DAG2     <---------LBD16              --------->ATERF1(1)                                      <----------DOF2 --------->GLK1(1)            ----------->HVH21                                          ==============================            ----------->TGA1                                  ----------->RAV1(1)      <---------GLK1(1)          <------MYB46(1)                             <-----------GT1------->TEIL<---------ANAC46<---          <------MYB83   <---------ZAT18<---------ZAT18    --------->ANAC46    <---------MYB46(3)<---  ----------------------->TaNAC69(2)   <---------ANAC46    --------->ANAC58    <---------DEAR3(2)---- ----------->GT1------>NtERF2          <---------ANAC58    --------->AtLEC2   <---------DEAR3(1) ---- ----->ARR11(3)<---------RAP2.6(2)     <---------ANAC58    --------->ANAC58 <---------RAP2.3(1)  ----   aactggtgaatttggtgacggctttggtaccctcagaaacagcgtgcttcgctaattcaccaggcaacacgagccttacggcggtttggatttcccggga  2915000      <---------TOE1(2)      <---------TOE2(2)      <---------DEAR3(1)   ------>ZmHOX2a(2) --------->HVH21 ----->ANAC55(2) ------ANAC46 ------ANAC58 ------ANAC58 ------bZIP60(1) ---->HVH21 >ANAC46 >HSFB2a(2) ->LBD16 ======MYC_MYB                                                    <-------GAMYB ------ANAC55(2)                                                 <---------MYB46(3) -LBD16<---------MYB46(3)                              <---------HSFB2a(2)                      <---- >LBD16<---------DEAR3(2)                              --------->HSFB2a(2)                      <---- ======bZIP_DOF         ------>MYB46(1)                <---------HSFC1(1)                      <----- ------TGA1a<---------ANAC58               --------->LBD16       <---------ANAC46   --------->ATHB12 ------O2   <---------ANAC58              --------->HSFB2a(2)   <------NtERF2       <---------ICU4 ----->O2<---------MYB52(1)               <---------HSFB2a(2) --------->ALFIN1     --------->ICU4 ----->bZIP60(1)        ------>MYB83 --------->HSFB2a(1)   <---------TOE1(2)       <---------YAB1 ----->TGA1a<---------ANAC46  <---------ATHB12         --------->HSFC1(1) ------->TEIL         <-----   cgtgatcgtcggtttcttgttatacctagccaatcgcgacgattccagagcaattttctcgaaggtgtcgttgatgaaactgttcatgattcccatggct  2915100                                                                    <---------ZAT18                                                                    <---------ZAT14        ------>ZmHOX2a(2)                                  --------->ANAC46        ==================HOX2a_HOX2a                 <---------------AtSPL3       ===================HOX2a_HOX2a                 <---------------AtSPL8       <------ZmHOX2a(2)                             ------>ZmHOX2a(2)      --------->ARR11(3)                            <------ZmHOX2a(2)      <---------ARR11(3)                           --------->ARR14(2)      <---------ARR14(2)                           <---------ARR14(3)      --------->ARR14(2)                           <---------ARR11(3)     --------->GLK1(1)                             --------->ARR14(3)     <---------GLK1(1)                             --------->ARR11(3)  --------->LBD16                                  <---------AGP1   --------->ZAT14 --------->HSFB2a(2)                              <---------CCA1(2) <------------------------ANAC81 <---------HSFB2a(2)    ------->TEIL             ----------->ARR10--------->ZAT14          ========== ------DOF2        <------ZmHOX2a(1)             <-------TEIL  --------------------->WRI1  ------>ZmHOX2a(1) -----DAG2--------->LBD16                       <--------P------->TEIL               <<<<<<<<<TBF1 ----ANAC58  <---------GLK1(1)                ----------------------->TaNAC69(2) -------------------- ----ANAC58  --------->GLK1(1)     <---------ALFIN1<---------ARR14(2)      --------------------->WRI1   tttccagagatcccgatatcaggatgaacttgtttcaacaccttgaataggtagatcttgtacgtctctgtgctcttcttagtcttcttcttcctctcgc  2915200              --------->ARR11(3)              <---------ARR11(3)               <---------MYB46(3)          <---------ANAC46      <---------ANAC58          --------->ANAC55(2)   <---------ANAC58          <---------ANAC58     <-----------RAV1(1)                          <----------DOF2          <---------ANAC58     <---------AtMYB61                           <---------ANAC58       <----------DOF2       <----------DOF2------>NtERF2            <------NtERF2    ------>ZmHOX2a(1)  --------->At4g35610 --------->DEAR3(1)       ------>NtERF2            --------    ===================HOX2a_HOX2a   <----------DOF2                --------->ABI4(2)        <------- ======================HOX2a_HOX2a  <---------ANAC58             <---------ANAC58           --------- ------>ZmHOX2a(1)     <---------At4g35610 ----------->HVH21    <---------DEAR3(1)  <---------AHL20(2) ======================HOX2a_HOX2a  <---------ANAC58       ------>NtERF2   <---------ANAC58 <-------- --->TaNAC69(2) ------>ZmHOX2a(2)---------->ID1<---------DEAR3(2)<---------ANAC58  --------->AHL20(2)   ttcctccttctttcgtgatcttcttatctgcctttggtgctttctccgacggtttcttctctgccttcggtgccattgctttggataaaattcggatttc  2915300                           ------>ZmHOX2a(2)                           *TSS                                                 <------MYB46(1)                        -------->HAHB4                                          <------MYB83      <--                        --------->ATHB12                                      <---------WOX13(1)  ---                        --------->YAB1                                      --------->ATHB12      ---                        <---------ICU4                        <---------At4g35610                 ---                       <---------YAB1                         --------->At4g35610                 ---      ----------->GT1  --------->ICU4            --------->CCA1(2)         <---------YAB1         --- ->GLK1(1)            <---------TOE2(3)         --------->ARR11(3)         --------->ICU4        <--- --GLK1(1)           --------->YAB1             <---------ARR11(3)      ------->TEIL       --------->WOX13(1) >ARR14(2)      <---------YAB1        <---------ZAT6         --------->ALFIN1<------------CBF   ----- -ARR14(2)     <---------TOE2(3)   --------->LBD16 <-----------TBP<---------ARR14(2)     ------------   gcgactagttgtaaattgacgattaatgatcgctctccgagtgataccgagatatatatagaggtgctgatacgaacatgattggtttttgatcaatctc  2915400                           <-------GAMYB                          <---------ANAC58                       ------->MYC3                       ------->MYC4                       <-------PIF4                       ------->PIF5                       <-------MYC4                       <-------PIF5                       ------->MYC2                       ------->PIF4                       <-------MYC3                       <-------MYC2                      <---------O2                      <---------ANAC58         <---------O2 <---------TGA1a         --------->O2 --------->O2   ------>ZmHOX2a(2)  --------->TGA1a  <------ZmHOX2a(2)   =============MYC_MYB <---------ARR14(2)   =============MYC_MYB --------->ARR14(2)   --------->ANAC55(2) -------ANAC55(2)     <---------ANAC46                                          <---------DEAR3(1) ------>ANAC55(1)     <---------ANAC58                                ------>MYB46(1) ------>ANAC58        <---------ANAC55(2)                             ------>MYB83 ------>ANAC58<---------ANAC58                                      <---------MYB59 ------>ANAC46<---------ANAC46           --------->GLK1(2)         --------->DEAR3(2) ------>ANAC55(2)    ------------>OsbHLH66      <-------GAMYB    <---------ARR14(2) ------LBD16 <------NtERF2<---------ANAC58    <---------TOE2(3)  --------->ARR14(2) ---->MYB52(1)<---------ANAC58        --------->ARR11(3)        <------ZmHOX2a(1) <---------PCF2 <--- >CBF    --------->ANAC46<-------TEIL <---------ARR11(3)  --------->ANAC46      <---------ZAT18  <---   acggatcgtctacgtggcgttatcacgtgcgttgatacaagataatctacggttgaattcacgagaggaaccgaactaatcgtgggctcatctaatgggc  2915500              --------->ANAC46              --------->ANAC58--------->AHL20(2)       <-----------GT1------>ZmHOX2a(1)   --------->GLK1(1)    <----------DOF2   <----------DOF2     <---------GLK1(1)         --------->TOE2(3) ---------->ID1 <------NtERF2 <---------AHL20(2)                    <----------DOF2 ------ANAC58 --------->ANAC58<---------AHL20(1)                 *TSS       --------->At4g35610 ------ANAC58--------->RAP2.6(3)    <---------ANAC46         <---------At4g35610          <----------DOF2   cttggccttttacaagacggcatcctttttaaaaaatttcgtcgatttccaacttatttgctctgctcttctttaatctgctctgttcttctctttccat  2915600                                                      <---------O2                                                      --------->O2                                                     <------NtERF2                                                    ------>NtERF2                                                   --------->DEAR3(1)                                                   ----------->HVH21                                                  --------->ATERF1(1)                                                 <---------ATERF1(1)                                                 ------>NtERF2                                             --------->ARR14(2)                                             <---------ARR14(2)                                            <------NtERF2                                    ------->TEIL                                            --------->ATERF1(1)                              --------                                           <---------ATERF1(1)                            <------ZmHOX2a(2)                                          <---------ANAC58                          <-----------HVH21                                     <---------ICU4<---------DEAR3(1)        --------->TOE2(3)    <--              --------->ATHB12 --------->ANAC58  --------->LBD16      <<<<<<<ZML2  --------->TOE1(3)     --------->WRKY38(1)       --------->ANAC58<---------LBD16     <---------HSFC1(1)     ===========     --------->WRKY12 --------->GLK1(1)   <---------ANAC58         <---------HSFB2a(2)   --------->AGP1     --------->WRKY45 <---------GLK1(1)   <---------ANAC46         --------->HSFB2a(2)  --------->At4g35610    --------->DOF5.7(2)      --------->At4g35610<---------DEAR3(1) --------->HSFC1(1)   <---------At4g35610   ttcagcgttgacttagttattgggatttctcagaagcaaaaatggcgtctccggcgacgtttcaattctctagaacaaaacttaaccttcagatcaacct  2915700                                                                               <-----------HVH21                                                                               <-----------TGA1                                                                         --------->GLK1(1)                                                                         <---------GLK1(1)         <-----------ARR10                                 <---------WRKY38(1)--------->ANAC46         --------->GLK1(2)                            ---------->DOF2   <---------GLK1(2)         --------->ARR11(3)                        --------->AtLEC2     --------->ARR14(2)         <---------ARR14(2)                        --------->ANAC58  --------->YAB1         ---------         <---------ARR11(3)  <---------ARR14(2)    --------->ANAC46 <---------ATHB12       <-------TEIL >P      --------->ARR14(2)  --------->ARR14(2)    ------>MYB83    ------>MYB46(1)     --------->ARR11(3) ---------HVH21------>ZmHOX2a(1)   <----------DOF2 --------->ANAC58------>MYB83--------->LBD16 =====================HOX2a_HOX2a------>ZmHOX2a(1) ------>MYB46(1)--------->WOX13(1)   <---------ARR11(3)   cgtcgagcgaaaatctccttcaaaactctcgtttcctcttttattcagagaccaagcaaagtcaacaccaatcagatttcccgtcataagagcttcatca  2915800  Previous    Next  AGI:  At3g09480.1    Description:  histone H2B, putative. Identical to Histone H2B.5 [Arabidopsis Thaliana] (GB:Q9SF55); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT5G02570.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96616.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96597.1); similar to unknown [Populus trichocarpa] (GB:ABK92758.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2B; (InterPro:IPR000558) Range:  from: 2914720    to: 2915327    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09490.1    Description:  chloroplast lumen common family protein. similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT2G37400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18093.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 2915565    to: 2916679    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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