Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->MYB46(3)                                         -                                        --------->ANAC58                                           <-                                        --------->ANAC58                                           --                                     --------->SPL7                                      <---------LBD16                                   --------->LBD16   <---------ATHB12                <---------ARR11(3)                                 <---------LBD16     --------->MYB46(3)              <---------ARR14(2)     ---------->DOF2           <-----------GT1   <-------TEIL                        --------->ARR14(2)   ------>ZmHOX2a(1)     ------>ZmHOX2a(2)------->GAMYB                              --------->ARR11(3)   =============================HOX2a_HOX2a---------->DOF2               <------ZmHOX2a(1) --------->LBD16   agttcctaaaaccagagcattctttgatcccattaaccggacaaccaaagatgcaaccatggagcaaaacatgaaggacacatacaatatccccagagag  2914100                                                                                                    <            ------>ZmHOX2a(1)                                                                      <-        --------->ARR14(2)                                                                         --        <---------ARR14(2)                                                                         <-    ----------------->AG                           --------->ANAC46            <-------TEIL        --    ----------------->AGL1                  ------->GAMYB                 =========================== -------->KAN4(2)                         --------->ZAT14                 ------>ZmHOX2a(1)        -- --------KAN4(1)                        --------->ANAC46             <---------At4g35610------>ZmHOX2a(1) ------->KAN4(1)     --------->YAB1   <-----------GT1               ------>ZmHOX2a(1)   =============   attgttcccaaatcctgaagtaatcaaaacaactcaaatatcacaacacacacacacagtctaacatgtcctgctcctaaattcatattcctctctctta  2914200                                                                               <---------MYB52(1)     <---------ICU4                                                           <---------SPL7  --------->WOX13(1)                                            <-----------ARR10 <-------TEIL                                          <---------HSFC1(2) <---------ALFIN1 ------ZmHOX2a(2)                                     --------->MYB52(2) <---------ABI4(2) --------ARR14(2)                         <---------DAG2        --------->GLK1(2) ------->AGP1                      ---------->DOF2  <---------MYB52(1)   --------->ZAT2 --------ARR11(3)               ------->GAMYB     <---------TOE2(3)   --------->At4g35610          -- ------->ARR14(2)            --------->MYB52(1)  <---------At5g28300  <---------At4g35610----------->ARR10 ======HOX2a_HOX2a           <-----------GT1     <---------LBD16<---------ARR14(2)      <------------ ------->ARR11(3)          <---------AHL20(2)   <-----------GT1 --------->ARR14(2)     <------ZmHOX2a(1) ======HOX2a_HOX2a     <---------YAB1 <---------ZAT18 <---------MYB46(3) --------->At4g35610   ------   agatccatcaatacaaaatgacagtataatttaacggtagagcaccttatttacggtagtttcgaggttctgagcagcaccgtaagcgaggaagattagc  2914300                                                                                             ------>ZmHOX2a(1)                                                                                            <--------                                                                                          ------>NtERF2                                                                                         --------->DEAR3(1)                                                                                         <---------ALFIN1                                                                                        --------->ATERF1(1)                                                                                        --------->DEAR4(2)                                                                                        --------->RAP2.3(1)                                                                                        --------->ORA47(2)                                                                                       <---------RAP2.3(1)                                                                                       --------->ABI4(2)                                                                                       ------>NtERF2                                                                                       <---------ATERF1(1)                                                                                      --------->DEAR3(1)                                                                                      <---------DEAR3(1)                                                                                    ------->GAMYB                                                                                    <---------RAP2.3(1)                                                                                    <---------ATERF1(1)                                                                                   <---------DEAR3(1)                                                                                   --------->ANAC46                     ------->TEIL                                                --------->MYB52(1)                --------->CCA1(2)                                              <------ZmHOX2a(2)            <---------TOE2(3)                                  =======================HOX2a_HOX2a        --------->At4g35610                                    ------>ZmHOX2a(1)<---------WRKY12       --------->GLK1(2)                     --------->ZAT2 <------ZmHOX2a(2)  =====================HOX2a_HOX2a     <---------GLK1(1)      <---------MYB52(1)       <----------DOF2          <---------ARR11(3)     --------->GLK1(1) --------->KAN4(2)     <---------ZAT2--------->ARR14(2) --------->ARR11(3)  <-- -------->DOF2 --------->ARR14(2)            <---------At4g35610           <------NtERF2<------NtERF2 ---------WRI1 <---------ARR14(2)            --------->At4g35610  ----------->RAV1(2)--------->RAP2.3(1) --->At4g35610<------ZmHOX2a(1)        <----------DOF2     <---------ARR14(2)--------->GLK1(1)  -----   agaaaggagatgctgaggatatgaacatcccttgtgtagcactttccagctctgactttccgatcctcaccagaggcagagatcaacggcgcctcctcgt  2914400                                                          --------->ICU4                                                        ---------->DOF2                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                    <---------ZAT14 <---------ANAC46                                    --------->ZAT14 <---------LBD16                                  --------->At4g35610--------->LBD16                    --------->ARR11(3)          --------->ZAT2   <---------DEAR3(1)                 <------NtERF2    <---------At4g35610<---------HSFB2a(2)       --------->GLK1(2)          --------->bZIP60(2)--------->HSFB2a(2)   --------->ANAC46   --------->HSFB2a(2)     <---------ZAT18      --------->At4g35610       <---------LBD16 -ALFIN1       <---------ANAC46   --------->O2  <---------At4g35610      <---------ALFIN1          -- -------DEAR3(2)--------->LBD16 <---------WRKY38(1)<---------LBD16  --------->ALFIN1               <- ----->ID1    <---------LBD16 <-----------HVH21 <---------ZAT2  --------->At4g35610   ---------->DOF2   cgtttcgagattccatggcggagatttagtccggtcacctcactgactacagctccgggaaagatgagcggtgctccacggagagagtgaaagtcaaact  2914500                                                                     <------MYB83                                                                     <------MYB46(1)                                                                     ----------->GT1                                                                    --------->MYB59                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                  <---------MYB52(1)                                                                 <---------SPL7                                                                <---------MYB46(3)   <---------MYB52(1)                                                               <---------ANAC58     ----------->GT1                     --------->MYB52(1)                        <---------ANAC58     <XXXXXXXXXXXXXXXX                     ------>MYB83                             <---------LBD16      --------->ANAC58                     -------->P                             <---------WOX13(1)     --------->ANAC58                     ------>MYB46(1)                       <------------CBF       --------->SPL7                    --------->MYB55(1)                    --------->ATHB12      <---------SPL7            <------ZmHOX2a(2)                             <---------ICU4      <---------------AtSPL8 ------->ZAT14     *TSS   <-----------HVH21              --------->ICU4       --------->MYB59    ---- --------ZAT14   ------>NtERF2    --------->CCA1(2)      <---------YAB1       <---------------AtSPL3   ctgtagagagagagatcgatgcctaccgtttcagagatttggaacttccaagaccggtgatgattgcggttcggtttattttggtacggtatttctaatt  2914600                                                     --------->AHL20(2)                                     <-------GAMYB   <---------AHL20(2)                     ---------                                    --------->MYB52(2)                           <---------MYB52(1)                                    --------->MYB55(2)                   <---------ICU4    <---------LBD16                                    <---------MYB46(3)---------->DOF2   <---------AHL20(2)<---------ANAC46                                    --------->MYB111(2)    --------->GLK1(2)   <---------ANAC46                                    <-----------RAV1(1)   <---------GLK1(2) <-----------GT1--------->LBD16   --------->AHL20(2)         <------MYB46(1)     --------->WOX13(1)    <---------YAB1    <---------LBD16   <---------AHL20(2)         <------MYB83      ----------------->AGL3--------->YAB1      --------->LBD16 XXXXMIR4243<-------TEIL <---------YAB1     --------->ALFIN1       <---------ARR11(3)    <---------LBD16 -------->CBF            <---------TOE2(3)  <---------ATERF1(1)    --------->ARR11(3)   <---------LBD16   tcaatttatatcggttcagactaaattgagattggtgtttgttgggctgggccaattaaagaatctcaagatttataatttccgtttatttcccggggaa  2914700                  ------>ZmHOX2a(1)                ------>ZmHOX2a(2)               <------ZmHOX2a(2)              --------->ARR14(2)              <---------ARR11(3)              --------->AGP1              --------->ARR11(3)              <---------ARR14(2)             <---------GLK1(1)                  --------->ARR11(3)                          ---------             --------->GLK1(1)           --------->ANAC46                        --------->TOE2(3)   <------ZmHOX2a(1)                 --------->YAB1                             <---------ANAC55(2)   ====================HOX2a_HOX2a  <---------YAB1                              ----------->GT1   ===================HOX2a_HOX2a <---------AHL20(2)      --------->TOE2(3)   --------->MYB52(1) <---------TOE2(3)<----------DOF2--------->AHL20(2)       --------->TOE1(3)--------->YAB1  <---------ATHB12 >LBD16 --------->CCA1(2)        --------->ICU4 <---------ARR11(3)        <---------YAB1 --------->WOX13(1)   actgaggaagaaacgagatcctttacaattttgtatttattatacccaaagatttgtaaaccctaatttcaatagcatcataacgtaaaatcaatcatag  2914800                                                                <---------AHL20(2)       ------>MYB83                          --------->ARR11(3)                    --------->AHL20(2)     <---------MYB59                          <---------ARR11(3)             ------->GAMYB               ------->TEIL --------->RVE1(1)       <---------CCA1(2)            <-----------GT1           ---------->DOF2  ---- >YAB1                 --------->AHL20(2)             --------->MYB52(1)  ----------->GT1------>MYB46(1)   aaaatatcgaagagactgccgaaaattatatctttgaaatcaactggtgaacatattaaccgaaaataaaatcgaagagaaaaaaagaacctaatctaag  2914900                                                                                                   --                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                              -------                                                                                            ---------                                                                                            ---------                                                                                <-------GAMYB--------                                                                                =====================                                                                               <---------DEAR3(2)<---                                                                          --------->SPL7    ---------                   <----------DOF2                                       --------->MYB52(1) <--------               <---------ANAC46                                         <---------SPL7     <---------LBD16              --------->ATERF1(1)                                      ==============================              --------->RAP2.6(3)                                      <---------DAG2     <---------LBD16            ----------->HVH21                                          <----------DOF2 <---------GLK1(1)            ----------->TGA1                                  ----------->RAV1(1)      --------->GLK1(1)          <------MYB46(1)                             <-----------GT1------->TEIL<---------ANAC46<---          <------MYB83   <---------ZAT18<---------ZAT18    --------->ANAC58    --------->MYB55(2)----  ----------------------->TaNAC69(2)   <---------ANAC46    --------->AtLEC2    <---------MYB46(3)---- ----------->GT1------>NtERF2          <---------ANAC58    --------->ANAC46   <---------DEAR3(1) <--- ----->ARR11(3)<---------RAP2.6(2)     <---------ANAC58    --------->ANAC58 <---------RAP2.3(1)  <---   aactggtgaatttggtgacggctttggtaccctcagaaacagcgtgcttcgctaattcaccaggcaacacgagccttacggcggtttggatttcccggga  2915000  Previous    Next  AGI:  At3g09470.1    Description:  Identical to UNC93-like protein [Arabidopsis Thaliana] (GB:Q94AA1;GB:Q67XL1;GB:Q67Y57;GB:Q9SF56); similar to hypothetical protein [Vitis vinifera] (GB:CAN76819.1); contains InterPro domain Protein of unknown function DUF895, eukaryotic (InterPro:IPR010291); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 2910379    to: 2914519    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09480.1    Description:  histone H2B, putative. Identical to Histone H2B.5 [Arabidopsis Thaliana] (GB:Q9SF55); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT5G02570.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96616.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96597.1); similar to unknown [Populus trichocarpa] (GB:ABK92758.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2B; (InterPro:IPR000558) Range:  from: 2914720    to: 2915327    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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