Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <---------MYB52(1)                                                                                     --------->ANAC46                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                          --------->GLK1(1)                                                                         <-----------ARR10                                                                         <---------ARR14(3)                                                                         --------->ARR14(3)                                                                         --------->ARR11(3)                                                                         <---------ARR11(3)                                                                         <---------ARR14(2)       <--                                                                         --------->ARR14(2)       <--                                                                         <---------ARR11(1)       <--           --------->MYB52(1)                                           <---------CCA1(2) --------->ANAC58         <---------MYB52(2)              <----------DOF2                <---------ARR14(1)--------->ANAC58        --------->ANAC58                <---------DAG2                 --------->LBD16--------->LBD16        --------->ANAC46            ----------->HVH21                <---------LBD16<---------LBD16 -------->YAB1                    --------->At4g35610          <------ZmHOX2a(1) --------->MYB46(3) ---------ICU4 --------->At4g35610--------->CCA1(2)            ==================HOX2a_HOX2a<-------- ----GT1--------->ANAC58     ---------->DOF2   <----------DOF2 ===================HOX2a_HOX2a    ----   attcatcaccaagtaacagctaaatgggagagaaagagatgacctttcgcttaatctcatgaacaggactctccggatcttcaacatccggcatgtaatt  2863900                                                                                            <--------                                                                                            <--------                                                                                    <---------DOF5.7(2)                                                                                  --------->DOF5.7(2)                                                                                  <---------MYB52(1)                                                                                 <----------DOF2                                                                                <---------ANAC46                                                                               <------NtERF2<--------                                                                              <---------ORA47(2)                                                                              <---------ATERF1(1)                                                                              <---------RAP2.3(1)                                                                              <---------ERF1---------                                                                              <---------RRTF1(1)                                                                              <---------DEAR4(2)                                                                              ------>NtERF2 <--------                                                                             <---------DEAR3(1)                                                                             <---------ANAC46                    --------->LBD16                                          <---------RAP2.3(3)                --------->GLK1(1)                                            <---------RAP2.3(2)                <---------GLK1(1)                                            --------->DEAR3(1)         <---------ARR14(2)                                                 --------->ATERF1(1)         --------->ARR14(2)                                                 <---------ABI4(1)       ----------->HVH21                                                    <------NtERF2  <---------LBD16       --------->ANAC46                                                    <---------DEAR4(2)   --------->TCP20 --------->LBD16                                         <---------ATERF1(1)   --------->ARR14(2)                                                      <---------RAP2.3(1)   <---------PCF2------>ZmHOX2a(2)                                        <---------RAP2.3(2)--------   <---------ARR14(2)                                                     <---------DEAR3(1)<-------- -------ANAC46  <------ZmHOX2a(2)                                   ----------->HVH21    --------->ARR14(2) -------ANAC58 --------->ARR14(2)                            ---------->DOF2--------->RAP2.3(1) -------ANAC58 <---------ARR14(2)                   <-----------HVH21 ---------->DOF2    <---------ARR14(2) -AHL20(2) <---------LBD16                         --------->ANAC46--------->At5g28300   --------->GLK1(2) ----->ATHB12--------->LBD16--------->LBD16      --------->ANAC46 ----------->GT1<-----------HVH21   gagtggaacccgacccggatccctgaaaaccgcgatggagtaattgtatatacacatcagagccaaagcggtgaaagcggcggcgttagcgattccggga  2864000                                                                                   <---------LBD16                                                                                  <---------ANAC46                                                                                  <---------O2                                                                               ----------->TGA1                             ----------->GT1                              --------->DEAR3(1)    --------->ALFIN1       ---------->DOF2                                --------->AtMYB61 -ANAC58             <------ZmHOX2a(2)                                    <---------ALFIN1 -ANAC58          --------->MYB46(3)                                --------->REM1(1)         ------- -HSFB2a(2)       --------->DEAR3(1)                               ------>MYB83----------->HVH21 >HSFB2a(2)     --------->MYB52(1)                                 ------>MYB46(1)<---------bZIP60(2) -ANAC46       <---------ALFIN1                                   ----------->RAV1(1)         <------ ->LBD16      --------->MYB46(3)                  --------->At4g35610    --------->MYB46(3)   ------- -LBD16       <---------MYB55(2)            ---------->DOF2  <------ZmHOX2a(2)<-----------HVH21   gacgaagtgaggctgaaccaccgatcgatgaaagtgaaaaccgaggcaaagtagatgaaaccgatcaccaacatcaccaccgtgacggggagagagaatc  2864100                                                           <---------MYB46(3)                                                          <---------ANAC46                                                        --------->LBD16                                                    <---------ARR14(2)                                                    --------->ARR14(2)                                                   --------->ATERF1(1)                                                  ------>NtERF2                                                 <---------ANAC58                                                --------->ATERF1(1)                                               ------>NtERF2                                               <---------RAP2.3(1)                                           ----------->HVH21                                          --------->DEAR3(2)                                    ------>NtERF2<---------ANAC58                                   --------->DEAR3(1)   ------>NtERF2           --------->AHL20(2)                                   <---------ANAC46<------NtERF2                --------->ATHB12                                   <---------DEAR3(1)  <---------DEAR3(1)       --------->ATHB51                                  --------->RAP2.3(1) <---------LBD16           <---------AHL20(2)          <---------MYB52(1)    ------->PIF5   <---------ATERF1(1)             <---------AHL20(1)        <---------ANAC58        --------->DEAR3(1)<---------ATERF1(1)          --------->AHL20(2)        <---------ANAC58        <-------PIF5--------->MYB52(1)                 <---------AHL20(2)    <----------DOF2            --------->DEAR3(2)<---------DEAR3(1)        --------->AHL20(2)       < -->GLK1(2)                    <---------LBD16<---------DEAR3(1)           <---------AHL20(2)       < ---ARR14(2)                  --------->MYB52(1)<------NtERF2         --------->AHL20(2)     <------- -->ARR14(2)       <---------AHL20(2)<------NtERF2<-----------HVH21   <---------AHL20(2)<---------AHL20(2)   cgactcctttccgtttcatattttttttggagcaccggcgtcgaaacgacggcgtctccggcgagtggatttttaatttaaattatttgttttatttatt  2864200                                                                                                   <-                                                                                                  <--                                                                                      <---------HSFC1(2)                                                                                      <---------HSFB2a(1)                                                                                      --------->ZAT2                                                                                      --------->HSFB2a(1)                                                                                      <---------ZAT2                                                                       --------->GLK1(1)         ----                                                                       <---------GLK1(1)         ----                                                                       <------ZmHOX2a(2)       <-----                                                                      <---------ARR11(3)       <-----                                                                      --------->ARR14(2)       <-----                                          --------->SPL7              <---------ARR14(2)      -------                                      <---------------AtSPL3          <---------ARR14(3)     ------>NtERF2          <---------WOX13(1)     <---------MYB46(3)                   --------->ARR11(3)    <--------        --------->ATHB12    <----------DOF2                          --------->GLK1(1)<---------At4g35610 ----------DOF2       <---------------AtSPL8                         <---------GLK1(1)--------->At4g35610 ---------DAG2<-----------RAV1(1)<-----------RAV1(1)    <---------ETT(2)              --------->HSFC1(2) --AHL20(2)  <---------TOE2(3)<-----------RAV1(1)  *TSS --------->ETT(2)------>ZmHOX2a(2) <---------ALFIN1   cgctttctctcgattgatgttgttgttgtactttgttgttggagtacgtctgaagttgtcgacgattttggagatctcttgaactcgaagctccccacct  2864300                                 <---------ARR14(2)                              <---------ANAC58                              <---------ANAC55(2)                              <---------ANAC46     ----------->HVH21        --------->ANAC55(2) --------WOX13(1)       <---------AHL20(2) ----------CBF       --------->AHL20(2)                           --------->ARR11(3) -->MYB46(1)         <---------AHL20(1)                         <---------TOE2(3) -->MYB83            --------->AHL20(1)   <----------DOF2  <--------HAHB4 ----MYB46(2)        <---------AHL20(2)  <---------DAG2    --------->YAB1  --------->YAB1 ----MYB111(1)      --------->AHL20(2)---------->ID1      <---------YAB1   -------->ATHB1 ----MYB59          --------->YAB1  <-----------GT1    <---------AHL20(2)  --------->ATHB51    ------ -->ANAC46         <---------YAB1--------->ARR14(2)   --------->AHL20(2)  <---------YAB1     <------- -ALFIN1       <----------DOF2<---------ANAC58    <---------AHL20(2)  ------>ZmHOX2a(1)      --------   aattgaaatgaccccttctttattatattatttcgtatttgccccttttgttttaattttatcattaaggtcctctattattgttttcaaaattttgctg  2864400                                                        --------->At4g35610                                                  --------->AHL20(2)                            <---------YAB1        <---------AHL20(2)     --------->TOE2(3)   --------->GLK1(2)       <---------AHL20(2)    <-----------HVH21 ----->HVH21            <---------ARR14(2)  ------->GAMYB       <---------AHL20(2) --At4g35610  ------>ZmHOX2a(1)      --------->LBD16    <---------At4g35610 ->At4g35610 --------->TOE2(3)   <-----------GT1 --------->ICU4 --------->AHL20(2)   acacatttcttaattcctaaaatgcagtttctgattatccgtataaccgaaattatttagctccatttaaaaatgtcagagcattttcgataattcgctt  2864500                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                             --------->GLK1(1)                                                                             <---------GLK1(1)       <---------ICU4                                                       <---------ARR11(3)       <---------AHL20(2)                              <---------ANAC46   <---------YAB1       --------->ATHB51                                <---------ANAC58 --------->YAB1       <--------ATHB1             <---------YAB1       <---------ANAC58 <---------ICU4       --------->AHL20(2)  <---------TOE2(3)      --------->ATHB12     --------->ICU4      <---------ATHB12     <---------TOE1(3)      --------->YAB1       <---------YAB1      <---------ATHB51    <-----------RAV1(2)     <---------ICU4     --------->YAB1               ---      --------->ICU4     <-------TEIL          --------->YAB1     <----------DOF2       --------->YAB1   cgtctccaataatttagctatgtaacgttcaggtttgtaattggaactagaatcatggcttgcaaagactttcatgatgatatctcttaatgagcatttt  2864600                         --------->AHL20(2)                        <---------------AGL15                         --------->YAB1                            --------------->AGL15                     --------->AHL20(2)                        <---------ZAT14                     <---------AHL20(2)                        --------->ZAT18           <---------AHL20(2)                          --------->At5g28300        <---------TOE1(3)           --------->AHL20(2)                         ----------->GT1       <---------ZAT6--------->ANAC46   <---------ANAC46 --------->AHL20(2)     ----------->GT1   --------------->AtSPL8     <-----------GT1 ------>MYB52(2)<-------TEIL  ---------->DOF2--------->AHL20(2)--------->ZAT14    <---------TOE2(3)   tagttgctcatatataaattcatttaataaaaaaaagaagattgcaagttaataaactgtaaaactgtactaaaattagtgtttaaagtttcacaaaact  2864700      ------->TEIL<----------DOF2      <---------ARR14(2)      --------->ARR14(2)         --------->RVE1(1)   <---------ANAC55(1)          <---------ARR11(3)   --------->ANAC55(2)          --------->GLK1(2)   <---------ANAC55(2)          --------->ARR11(3)   <---------ANAC46       <---------TOE2(3)                           <---------ZAT18   <---------ANAC58      ---------->DOF2                <-----------RAV1(1)                        --   <---------ANAC58    <---------YAB1         <-----------GT1         --------->ZAT18 --------->WOX13(1)   tgattacgtatttgatagaacttttattaaagaaaatctcttattgtttcacaattctatgttgtttcattgttcactattctaccatcaatccagtttt  2864800  Previous    Next  AGI:  At3g09320.1    Description:  zinc finger (DHHC type) family protein. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G04270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15666.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) Range:  from: 2861749    to: 2864251    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09330.1    Description:  amino acid transporter family protein. similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G09340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68912.1); contains InterPro domain Amino acid transporter, transmembrane (InterPro:IPR013057) Range:  from: 2864788    to: 2867236    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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