Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->LBD16                     --------->At4g35610         <---------LBD16                       <---------At4g35610        --------->MYB52(1)                   <-----------RAV1(2)     <-----------ARR10      <---------MYB55(2)                   --------->GLK1(2)         --------->GLK1(2)       --------      --------->MYB46(3)               --------->YAB1            --------->HSFB2a(2)         -------- ---->ANAC58                       ---------->DOF2         <---------YAB1          ---------->DOF2  < ---->ANAC58                   --------->TOE2(3)         <-----------GT1    <---------ICU4 <--------- ->DOF2------->GAMYB           --------->TOE1(3)    <---------YAB1  <---------GLK1(2) <---------At4g35610   gctagttaaccaccggaaaaacactcgtacaaaccctaaaatcagaatcagatgatgaattactcttgtagaatctcagcattgctaaagctgctttgac  2861000                                           -------->ATHB1                                           --------->ATHB51                                           <---------AHL20(2)                                           --------->AHL20(2)                                           <---------ICU4                                           --------->ATHB12                                           <--------HAHB4                      <---------At4g35610 <---------ATHB51                      --------->At4g35610 --------->ICU4            <---------ARR11(3)          --------->WOX13(1)                      <----------DOF2  <---------ALFIN1    ----------->RAV1(2) <---------ATHB12                 ------->GAMYB ->WRKY38(1)<-----------ARR10          --------->AHL20(2)         <----------DOF2   <---------TOE2(3) ->WRKY45  <---------ZAT2             <---------ATHB12      <-------TEIL <---------At5g28300 ---------ALFIN1    <---------ALFIN1--------->WOX13(1)     --------->CCA1(2) --------->LBD16 -DOF2     <---------At4g35610    ------->GAMYB       ---------->DOF2   <-----------GT1       -------   tcccacactctccagctcttccccatctgaactcaacccaatcaattatttgttacaaaagatacaaactttattaaccccgatttatggataagagaaa  2861100                                                             --------->ZAT2                                                             <---------ZAT2                                                             --------->At4g35610                                                             <---------At4g35610                                                          ------->GAMYB                                                       --------->MYB52(1)                                     <------NtERF2---------->DOF2 <----------DOF2    <---------At4g35610                                   <---------ANAC58 --------->ANAC58              <------ZmHOX2a(1)        <---------ANAC46           <---------ANAC46 --------->ANAC58           --------->LBD16  <---------ARR11(3)               <---------ANAC58 --------->ANAC46           <---------LBD16  --------->ARR11(3)--------->ARR14(2)           --------->ARR14(2)           <---------ANAC46    <-- --->DOF2           <---------ARR14(2)           <---------ARR14(2)           <---------TOE1(1) -----   gagagaccttgaggggatgcagggtctggtttcgatggcgtcgatttcgcagataagcaacggagctgatttttggtgttccgaggaagatgatcaaacc  2861200                                                                                              -------                                                                                              -------                     <---------DEAR3(2)                                                       -------                    --------->ETT(1)                                                          -------                    <---------DEAR3(1)                                                        -------        <-------TEIL<---------DREB2C(2)                                                      --------      <---------ARR14(2)                                                                  --------->ETT(2)      <---------GLK1(2)             <------ZmHOX2a(1)                   <------ZmHOX2a(1) <---------ETT(2)      --------->ARR14(2) <---------AtMYB61                        --------->ANAC55(2)  ----------->HVH21     <------ZmHOX2a(1) <---------MYB52(1)                         <---------ANAC55(2)<---------At4g35610 ---------RAV1(2)   <---------At1g77200                       <-------GAMYB          --------->At4g35610 ---->TOE2(3)       <---------DEAR4(1)   <---------YAB1      ----------->GT1  <---------MYB46(3)    -   tcaggcaggattcgttgaattgtcggtgaggtttaagaggattacgatttttagagattgtgagggttacataaggacgatggatggagatgacgaccgc  2861300   <---------TOE1(3)   <---------TOE2(3) <---------AHL20(2) -->DREB2C(2) -->ANAC58                                                       *TSS                         <------ -->ANAC58--------->At4g35610                                   ----------->GT1           --------->AHL20(2) >GAMYB   <---------At4g35610                                <---------AtLEC2             <---------AHL20(2) -->RAP2.6(2)                                            <---------------AGL15          <-----------TBP ->MYB46(3)                                              --------------->AGL15      ------>MYB83 -------->AHL20(2)                                      <-----------------AGL1      ------>MYB46(1)   catttaatgttaagctcaaaaccaagtttccaatctcgctaaaacagaaaactctgtttctctgtatggaaaaacgacccattaccgactatttatattt  2861400                                                                         --------->O2                                                                         <---------O2                                                                         <---------TGA1a                                                                         --------->TGA1a                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                         --------->ANAC46                 <---------ZAT14       <---------ARR14(2)                <---------ANAC55(2)  -------    --------->AHL20(2)                 --------->ARR14(2)                --------->ANAC55(1)  -------    <---------AHL20(2)             <---------ANAC46                 ----------->HVH21      --------->TOE1(2) ---AHL20(2)     --------->ZAT14   --------->ETT(1)         <------------CBF         <---------------AtSPL3   ttgtattaaaaaacaacactgtgctatgcatatagtgtcggaatccagtttttgtggtgaagaattgtatatgacacgttagagaaatttgtacgaacga  2861500                                                                                          <------MYB83             <---------ANAC55(2)                                                        <---------WOX13(1)             --------->ANAC46                   --------->ZAT6             --------->GLK1(1)            <---------LBD16                  <----------DOF2             <------ZmHOX2a(1)<------MYB46(1)     --------->At4g35610                    ------>ZmHOX2a(2)--------->GLK1(2)        --------->ATHB12     <---------At4g35610                    ====================================HOX2a_HOX2a    ------->TEIL                          --------->ARR11(3)<---------GLK1(2)       <---------MYB52(1)  <-------TEIL             ---------->DOF2<---------ARR11(3)<---------ARR14(2)     <---------At4g35610 -->ANAC58<---------ARR14(2)        --------->ICU4          --------->ARR14(2)     <-------GAMYB  <-- -->ANAC58--------->ARR14(2)        <---------YAB1        ----------->ARR10<---------GLK1(1)     <---   aaaatgcatctgaatacggagcacatccacaaagagtcatacttgatctttcactatgaccagattctgaacagaggaattcttcagttgattggtgttg  2861600               <---------ARR11(3)            <----------DOF2           <---------ANAC58                       <-----------------AGL1                     <-------           <---------ANAC58         ------>ZmHOX2a(2)                 <-----------HVH21 <----------DOF2      --------->DAG2  =====================HOX2a_HOX2a         --------->AtLEC2        <---------ANAC58     ---------->DOF2  ------>ZmHOX2a(1)  <<<<<<<<<TBF1     <-----------HVH21           <---------ANAC58 ---------RAV1(1)------>ZmHOX2a(2)<---------ARR11(3)  --------->ARR14(2)              ---------->ID1 ------TOE2(3) --------->ARR11(3) --------->ARR11(3)  <---------ARR14(2)         <----------DOF2<----   atgttggaaaagggcttgatcttcctctctaattctgatcttcttcttcgtcttccaatctggtcatacaaatgtcacaaactcttttggctttttttct  2861700                                                                                            <--------                                                                                         <---------AHL20(2)       <---------ANAC58                                        <---------YAB1         --------->AHL20(2)       <---------ANAC58                <---------ANAC55(2)  --------->ARR14(2)     --------->TOE2(3)- ---------->DOF2         <---------AtLEC2                   <---------ARR14(2)     --------->TOE1(3)< ----GT1          --------->YAB1       --------->ANAC55(2)  --------->GLK1(2) ---------->DOF2   ----- -----------AGL15<---------YAB1       <-------TEIL          ------->TEIL    <---------YAB1  ---------   atacaaagtgcttacagctataattctgcatagaaacaaatacatattgacaactgtgtctgaatctgataacaaaatatgaaagccttaaattatcgta  2861800                                                                               <----------DOF2                                                                               <---------DAG2                                                                              <---------------AGL15                                                                              --------------->AGL15                                                                        ------>MYB46(1)                                                                        ------>MYB83       <----------DOF2                                       ------->TEIL     <-----------------AGL3 <---------ICU4                                              <---------ARR14(2)--------------->AGL15 --------->YAB1                                              --------->ARR14(2)<---------------AGL15 -------AtSPL8                                 <---------GLK1(2)--------->ANAC46       <------ZmHOX2a(1) -------->ICU4                  --------->YAB1--------->At4g35610     <---------MYB59<---------TOE2(3) ---------ATHB12         <---------ANAC46     <---------At4g35610     <---------MYB111(1)    -------- ---->SPL7          <---------ANAC46  --------->YAB1        <---------CCA1(2)----------------->AGL1 ------>AtSPL3   <---------MYB52(1)--------->YAB1--------->At4g35610  <---------MYB46(2)--------->GLK1(1)   caatgatgtcttttcgcctgttaagtggtatgtataataagcataatcagcttctgagttctgtatccacaacctaacttcctttttgaggaatccaaag  2861900  Previous    Next  AGI:  At3g09310.1    Description:  Identical to UPF0161 protein At3g09310 [Arabidopsis Thaliana] (GB:Q9SR32); similar to Os11g0706100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068553.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD20081.1); contains InterPro domain Protein of unknown function DUF37 (InterPro:IPR002696) Range:  from: 2860408    to: 2861365    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09320.1    Description:  zinc finger (DHHC type) family protein. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G04270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15666.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) Range:  from: 2861749    to: 2864251    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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