Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ------>MYB83                                                                ------>MYB46(1)                                                               --------->MYB52(1)                                                              --------->TOE2(2)                                                       --------->ARR11(3)                                                       <---------ARR11(3)                     -------                                             <----------DOF2 <---------MYB52(2)              <------- -------MYB52(2)      ------>ZmHOX2a(1)     <---------DAG2   --------->MYB46(3)              -------- ------>MYB46(3)  ------->GAMYB  <---------ANAC58    --------->ICU4                          <------- -------GT1       --------->AtMYB61    <-----------HVH21<------ZmHOX2a(2)                    -------- ---MYB52(2)     --------->MYB46(3)   --------->bZIP60(1)    <---------MYB55(2)         --------->ANAC46 >WOX13(1)      -------->P       <---------ANAC58  ---------->DOF2              --------->MYB52(1)   acaaaccttgtacttagcaacctcctcgctcacttccttgaggtcacctttggtaaagatcaaaccaacgtttccctacaaaaaacgaacacagaaccat  2824700        <-----------GT1    --------->AHL20(2)    <---------AHL20(2)                   <--------HAHB4   <---------AHL20(2)                    --------->YAB1                                         <----   <---------AHL20(1)                   <---------ATHB12                                <-------TEIL   --------->AHL20(2)                 --------->WOX13(1)                               --------->GLK1(2) -->AtMYB61                        --------->TOE2(3)                              <---------At4g35610 --HSFC1(2)                      <---------ARR11(3)                            <------ZmHOX2a(1)----- ->MYB46(3)                      --------->ARR11(3) --------->ANAC58      <------ZmHOX2a(1) <------ZmHOX2a(1) --HSFB2a(1)                  --------->AHL20(2)    --------->ANAC58 ----------->HVH21<---------ARR14(2) ->HSFC1(2)               ----------->GT1<---------ICU4            ----------->RAV1(2)--------->ARR14(2)   cgcaaattattttctaaacacaaacacatcgataaaatctcaatcattttggacaagctaagaaagtttacctgaaggagaggaagcagattcaggattg  2824800                                   --------->ANAC58                                   --------->ANAC58                               ------->GAMYB                       --------->MYB52(1)                              --------->ANAC58                    --------->ANAC58          --------->ZAT14     --------->ANAC46                    --------->ANAC58        <---------MYB52(1)    --------->ANAC58   <---------ZAT18  ----------->HVH21       --------->LBD16       >>>>>>>>>MYB98 <xxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------LBD16        --------->MYB52(1)  <---------ZAT6--------->ANAC58       --------->ARR11(3)   <---------ARR14(2)      ------>ZmHOX2a(1)--------------------->WRI1   <---------ATERF1(1)   --------->ARR14(2)    --------->YAB1 --------->REM1(1)     --------->ANAC58       <---------ARR11(3) -----ZAT14            --------->ARR14(2)  --------->YAB1   ---------->DOF2     --------->ANAC46 ---->ZAT14            <---------ARR14(2) <---------YAB1 --------->LBD16<---------GLK1(2)<----------DOF2   cagtgtttccggtgttctcagagtgaatcctaacggaacgcttcatcatagtgttcttccccataagcacgacggagtctccacgaagaccctttctgat  2824900                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                           <---------ARR14(2)                                           --------->ARR14(2)                                           --------->ARR11(3)                                           <---------ARR14(3)                                           --------->ARR14(3)                                           <---------ARR11(3)                                           --------->AGP1                                    ------->GAMYB                               <------NtERF2--------->CCA1(2)                              --------->ANAC46     --------->ZAT18                              --------->RAP2.6(2)  <---------ZAT18                          <------ZmHOX2a(2)                 ----------->HVH21 --------->MYB46(3)                         <------MYB83 <---------ARR11(3)                --------->DEAR3(2) --------->DEAR3(1)                         <------MYB46(1)------>ZmHOX2a(2)                ------>ZmHOX2a(2)  <---------MYB52(2)                      <---------ANAC58--------->ARR14(2)            ----------->ARR10 --------->RAP2.3(2)  --------->ZAT14         <---------ANAC58<---------ARR14(2)     --------->At4g35610      --------->ANAC58     <---------ZAT14 ----------->HVH21       --------->ARR11(3)     <---------At4g35610      --------->ANAC58  <---------ANAC46 --------->ZAT2    <---------ANAC46     --------->ZAT2     <---------DOF5.7(2)<---------AGP1        --------->At4g35610  <---------DEAR3(1)     <---------ZAT2   --------->DOF5.7(2)----------->ARR10       <---------At4g35610<---------SPL7   gttctgaagctgagttgatccgacgttatcggccgcaacgaccaagatctgggtgtactcatcgataagctgacatagcttggtatcgtaggcgatcttc  2825000                                            --------->ANAC55(2)              <----------DOF2               <---------ANAC55(2)             <---------ANAC58             <-----------GT1             <---------ANAC58             --------->CCA1(2)              <---------ZAT14   ----------             <---------ANAC46      <------ZmHOX2a(1)                   --------->REM1(2)<---------ANAC46        --------->MYB52(2)   ----------->HVH21               --------->AHL20(2)         <---------ANAC55(2)     --------->TOE2(3)     <---------At4g35610--------->ANAC46 <-----------GT1          --------->ANAC55(2)   ------>NtERF2 <-----------GT1  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC46   <---------TOE2(3)   ttctctgccttagttgctttcaccattttcgctcacaggataagttacgagacacaaactcaatttaactctgtgtatagagagagtttgacgtaaagaa  2825100                                                                                                 <---                                                     <---------ARR14(2)                      <-------                             <-----------------AGL1  --------->ARR14(2)       --------->YAB1 <-------                            <---------ZAT18      --------->DAG2               --------->TOE2(3)  <---                    *TSS    --------->ZAT18     --------->MYB52(1)         <---------CCA1(2) -------- <---------TOE2(3)  <-----------TBP          <------ZmHOX2a(1)        <XXXXXXXXXXXXXXXXXXXXMIR1888 <---------TOE1(3) <---------MYB52(1)  <---------ANAC58              <----------DOF2  --------->MYB52(1) >DOF2            <---------RAP2.6(3)  <---------ANAC58    --------->STY1(1)------->TEIL    <-------TEIL   attagggttttggtatcagccgttttatagttcacgatttggcctgaggataagggaacctctagggttttctttgtgaatcttaatctaacggttcgtg  2825200                                 <-------GAMYB                                <---------MYB46(3)                                --------->MYB111(2)                                <-----------RAV1(1)                                --------->MYB52(2)                                --------->MYB55(2)                      <---------RAP2.3(1)                      <<<<<<<<<AtERF-3                      <<<<<<<<<AtERF-4                      ------>NtERF2                     <---------RAP2.3(3)                     <---------RAP2.3(2)                    --------->RAP2.6(3) ------ANAC58      --------->MYB52(1)                --------->MYB59 --ANAC58         ----------->HVH21           <-----------------AGL1 --ANAC58        ------>ZmHOX2a(2)           <-----------GT1 ------ANAC58   --------->At4g35610      <----------DOF2              ---------->DOF2        <------- ->MYB52(2)     <---------At4g35610     <---------DAG2         <-----------GT1            <---------ATHB12   cctgtttgcttcattctgatctgacggctcttgtttgttgggccttttcacaaattaggcccatttaaccagtaaaggctctcatctttcaaatgaagat  2825300                  <---------MYB52(1)       --------->ANAC58               <---------ATHB12            --------->ANAC58        <-------GAMYB                      --------->ANAC46             <---------YAB1       <---------DEAR3(1)                <---------ALFIN1               --------->ICU4           ----      <------NtERF2                  --------->MYB46(3)<---------HSFB2a(2)       <---------AHL20(2)    <---------DEAR3(1)        <-----------GT1          --------->HSFB2a(2)       --------->AHL20(2) --YAB1<---------MYB46(3)   --------->AHL20(2)--------->AtMYB61        --------->ARR11(3)  >>>>>>>>>>MYB80   agaacgtcgtcgttgcaatcgtttggcgaatttaacagaacaaacacaccaaaacttccaaaacatgtgaagtgatcatggatttatatttcaaaccaaa  2825400                                       <---------TOE1(2)                                  -----------                                      <---------LBD16                                   ---------->DOF2                           <---------TOE2(3)                                       <---------------AGL15             --------->ZAT18      ------->TEIL      <---------WOX13(1)             --------------->AGL15             <---------ZAT18     <---------GLK1(2)--------->ATHB12                --------->HSFB2a(2)  <-----------GT1          <---------TOE1(3)     <-------TEIL                  ------>ZmHOX2a(1)   <- ----->AHL20(2)            <---------YAB1<------ZmHOX2a(1)        --------->ZAT6  ----------------->AGL1   aaattcacattctagtgaacaaactatttaagattgaatctcaggaacaagttcattgatgtcaatttccactagtgtctccttcccaaacaaagtaaat  2825500                    --------->TOE1(2)                   --------->AtMYB61                  --------->MYB46(3)                  <---------ATHB12                 -------->P                 ------>MYB83               --------->MYB46(3)               --------->AtMYB61               <---------MYB111(1)              <---------MYB55(2)              <---------MYB52(2)              --------->DEAR3(2)              --------->MYB46(3)             --------->ANAC58             --------->ANAC58             --------->ANAC46       <---------ANAC58       <---------ANAC46--------->ANAC58       <---------ANAC58--------->ANAC58    <---------MYB52(1) --------->ANAC46                                           <---------YAB1   <-------GAMYB ------>MYB46(1)                                           <----------DOF2 >GT1--------->WRKY38(1)                                                 --------->ZAT2     --------- --------ALFIN1------->GAMYB  --------->GLK1(2)                     <-----------GT1      --------->ZAT6   cccaccgttgcctgcaaccaaccatacgaaagaatcagagagacatctaaacaaacacatttgtgcaaattgaccagctttgttatcaataacacaaagg  2825600  Previous    Next  AGI:  At3g09200.1    Description:  60S acidic ribosomal protein P0 (RPP0B). Identical to 60S acidic ribosomal protein P0-2 (RPP0B) [Arabidopsis Thaliana] (GB:Q42112;GB:Q8LCI7;GB:Q9SR42;GB:Q9SS70); similar to 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] (TAIR:AT3G11250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41330.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) Range:  from: 2823096    to: 2825120    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09210.1    Description:  PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription elongation regulator. similar to unnamed protein product [Vitis vinifera] (GB:CAO15757.1); contains InterPro domain Translation protein SH3-like (InterPro:IPR008991); contains InterPro domain Transcription antitermination protein, NusG, N-terminal; (InterPro:IPR006645); contains InterPro domain KOW (InterPro:IPR005824); contains InterPro domain Translation protein SH3-like, subgroup (InterPro:IPR014722) Range:  from: 2825285    to: 2826886    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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