Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->ZAT2                --------->At4g35610        --------->HSFB2a(2)                                     ----------->GT1  ------>ZmHOX2a(2)                                      <---------------AGL15     --------->AHL20(2) -------->ARR11(3)                                   --------->GLK1(1)          --------->DAG2 ---------ARR11(3)          --------->YAB1           <---------GLK1(1)   <----------ID1   atgatctcttgtagaattagctggaagaaataagaattcaaaatccagttagaagaaatctctatggagaaaaaaaaaacaaaaattgaatacatttgcc  2781700                                         <---------HSFC1(2)                                         --------->HSFC1(2)                                         <---------HSFB2a(1)                                        ------->TEIL                                      <---------SPL7                                     <---------ANAC58                                    ------------                                     <---------ANAC55(2)                                 <-----------                 <-------TEIL        <---------ANAC58                                    <---------YAB1                 --------->ZAT14     --------->ANAC55(2)                                -------------                 --------->ZAT18     <---------bZIP60(2)                                <------------                 <---------ZAT14    --------------->AtSPL8                              -------------               <-------PIF5        <---------TGA2(2)                            <---------At4g35610               ------->PIF5       ----------->HVH21                             --------->At4g35610      <------MYB46(1)           --------->CCA1(2)                               --------->ZAT2      <------MYB83            --------->YAB1                      <---------AHL20(2)    <------------   --------->CCA1(2)         <---------YAB1                       --------->AHL20(2)    <------------  <---------ARR14(2)       --------->YAB1--------->HSFB2a(1)    <----------DOF2 <---------ZAT2  -----  --------->ARR14(2)      <---------AHL20(2) <---------ANAC46   --------->TOE2(3)  <-------TEIL<-----   tcgagatttggtgagcaagtgcattgatataatgatatgacgtaccttcgtggatgagctaggcttctttaatttctggctcagcttcattccgattagg  2781800       --------->AHL20(2)       --------->YAB1  ------------>CBF --->AGL15                                                                            --------->LBD16 ----AGL15                                                                      --------->HSFB2a(1) ---->AG                                      --------->GLK1(1)                 <---------HSFB2a(1) -----AGL1                                   --------->ARR14(2)                 <----------TaMYB80 ---->AGL1                       --------->GLK1(2)                             <---------ARR14(2) -----AGL2                       --------->ARR14(2)                            --------->ARR14(2) -----AG                         <---------ARR14(2)                        <---------LBD16 ------>GT1                    <------ZmHOX2a(1)                           --------->LBD16      <---- ----TOE2(3)                 <---------TOE2(3)<---------GLK1(1)        --------->GLK1(2)  --------->CCA1(2)   gtaaaacaattaaaaaaaaactaaaatttctgaggaatctggaatcggaaaccctagcgagagagagagagtgattctggggattttccgagagatgaga  2781900                                                                                --------->TOE1(3)                                                                                --------->TOE2(3)                                                                                <---------MYB59                                                                             <-----------GT1                                                                        <---------AHL20(2)                                   <------------CBF                --------->AHL20(2)                                 <---------AHL20(1)                <---------AHL20(2)                                 --------->AHL20(1)            <---------MYB52(1)    <---------ICU4                             --------->YAB1         <---------AHL20(1)  --------->AHL20(2)                          --------->YAB1            <---------AHL20(2) --------->AHL20(1)                 ----------->GT1 --------->ARR11(3) --------->AHL20(1) <---------AHL20(2)          --------->REM1(2) <---------YAB1          --------->AHL20(2) --------->AHL20(2)         --------->ALFIN1--------->ICU4            <---------AHL20(2)  <---------AHL20(1)          <-   <---------MYB52(1)------------>CBF <---------AHL20(2)<-------TEIL  <---------AHL20(2)           -- --------CBF  <------ZmHOX2a(1)  <---------ARR11(3)--------->AHL20(2) --------->AHL20(2)         <---   ttgtcgttactgtgtaggagggaaacaattatcaaaatattgaattttaaaaaataaattcatccgttataaattaatttaacctaaaaattagtttctc  2782000                                        ---------->DOF2                                   --------------->AGL15                                   <---------------AGL15                                   <---------MYB59                                  ----------------->AGL3                        <---------ANAC46   <---------AHL20(2)             ----------------->AGL2                       --------->ATHB12   --------->AHL20(2)             ----------------->AG       <----------DOF2<------------CBF --------AHL20(2)               <-----------GT1         --------->ALFIN1  <---------ARR11(3)        < ------->AHL20(2)     --------->PCF2 ------>MYB46(1)  <-----------RAV1(1) --------->ARR11(3)   <----- -------DOF2          <---------PCF2 ------>MYB83--------->HSFB2a(2)     <---------CCA1(2) <---------   tttaattttttgtttttgaaaatgggcccataagttaccaaataaagccttctaaaatgtgggcttttcaggcccatatattgtttggatttgtttcctt  2782100                                                                    ------>MYB46(1)                                                                    ------>MYB83                                                                  ------->GAMYB                                                                  --------->AtMYB61                                                                  <---------MYB59                                                                 --------->MYB46(3)                                                                ------>MYB46(1)                                                                -------->P                                                                ------>MYB83                                                               --------->MYB55(1)                                                              --------->MYB46(3)                                                              <---------MYB55(2)                                       ------>ZmHOX2a(1)      <---------MYB46(2)                                   <---------ARR14(2)         --------->AtMYB61                                   --------->ARR14(2)         <---------MYB111(2)   <-----------GT1              --------->MYB52(2)            <---------MYB111(1)        ============ ---------AHL20(2)      --------->ARR11(3)                    --------->DEAR3(1)         <------ZmHOX2a(2) -----DOF2              <---------ARR11(3)                   --------->MYB46(3)         <---------ARR11(3) --GT1               ----------->TBP  *TSS              <----------DOF2       ---------->DOF2   tttttattccattttcttgaactataaatcttgttcgtttcctcttctaaatctctcgctttcaccaaccaaacccagaagaaagctcgagatcaatatc  2782200                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                              --------->GLK1(1)                                                              <---------GLK1(1)               -------                 <---------TOE2(3)                    <----------DOF2                         <------      <------ZmHOX2a(2)                             <---------HSFC1(2)                   <<<<<<<<<TAC1    <------ZmHOX2a(1)                               --------->HSFC1(2)                 --------->ZAT6  <---------TOE2(3)         <---------YAB1       <---------At4g35610       <---------------AGL15 --------->YAB1  <---------TOE1(3)             <---------HSFB2a(2)     <----------DOF2 <---------ALFIN1 ==========HOX2a_HOX2a <---------AHL20(2)  ------->TEIL     <------ZmHOX2a(1)        ----------->RAV1(1)   gaataaggatcacaaaattagggttttaatttgatagagaagatgaatttcagaagctttgaggagttctggcctttctacatgatgcaacactcgaatc  2782300         <---------HSFB2a(1)         --------->HSFB2a(1)         --------->HSFC1(2)                                                                       <--         <---------HSFC1(2)                   --------------------->WRI1                          <--        <---------TOE1(3)          --------->ANAC58                                     <---------At4g35610        <---------AtMYB61          --------->ANAC58                        <---------MYB46(3)    ----        <---------TOE2(3)   --------->YAB1   <---------ANAC58             <---------AtMYB61      <---    ------>NtERF2          <---------YAB1    <---------ANAC46            <---------MYB52(1)   <------   --------->ANAC46   <---------TOE2(2)      <---------ANAC58          <-----------RAV1(1) ------>NtERF2 -->ARR14(2)          <---------TOE1(2)   <---------MYB52(1)      <<<<<<<<<<WRKY26      --------->At4g35610 ---ARR14(2)        --------------------->WRI1<----------DOF2  <---------YAB1          <-----------RAV1(1)   catcgacgcgaaggttgcacttcataggtatcatcgcgagcatcgttgctttgatatgttcgattttgatcaactggtggttcttagctctggtgcctct  2782400         <---------GLK1(2)         --------->ARR14(2)         <---------ARR14(2)      --------->ANAC58      --------->ANAC58                                    <----------DOF2      --------->ANAC55(2)                               <---------ZAT2      <---------ANAC55(2)                          ------>NtERF2     --------->SPL7                                --------->LBD16     <-------TEIL                                 <---------ANAC46   <---------SPL7                             --------->KAN4(2)  <---------ANAC58                           --------->HSFC1(2)  <---------ANAC58                           --------->HSFB2a(1) <---------------AtSPL3                      <---------HSFC1(2)                                  <--- -------ANAC58                               --------->KAN4(1)               <---------MYB46(3)  ---- -------ANAC58                               <---------HSFB2a(1)         <---------AtMYB61 ------>ZmHOX2a(2) ----->ZAT2   <---------ANAC58               <---------KAN4(1)         <----------DOF2     ========== ------ZAT2   <---------ANAC58              <---------KAN4(2)    <---------ARR14(2)       =========== ---At4g35610 <---------ANAC46   <---------ANAC46<---------LBD16 --------->ARR14(2)       <------ZmHOX2a(2)   gcttgggtacggattcgcgtggtatagccacttcttcgtggaagggaatgttccggcgagctttgggcatccgctttggtcgtttctctgcgatctcaag  2782500                                                                                           <---------ARR11(3)                                                                                          <---------RVE1(1)                                                                                          <---------GLK1(1)                                                                                          --------->GLK1(1)                                                                                         --------->ARR14(2)                                                                                         <---------ARR11(3)                                                                                     --------->At4g35610                                                                                     <---------At4g35610                                                                                    ----------->RAV1(1)                                                                                  --------->ZAT2                                                                            ---------->DOF2--------->ARR11(3)        <---------At4g35610        --------->CCA1(2)                <---------ZAT2<---------At4g35610 ------ARR11(3)                    --------->At4g35610              --------->At4g35610  <---------ARR14(2) ----->ARR11(3)    <------ZmHOX2a(1)                                --------->ZAT2--------->At4g35610 =========================HOX2a_HOX2a                               <---------At4g35610  --------->ARR11(3) =========================HOX2a_HOX2a                        <-----------RAV1(1) ----------->RAV1(1)   atgtttagtctgatgctcacaggaagcatggagagagagatgaagagacttggtaagaggccattgttgcagctctcttgaagcagcagcagatatctct  2782600  Previous    Next  AGI:  At3g09080.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15780.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 2776264    to: 2781790    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09085.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO15778.1) Range:  from: 2782138    to: 2782745    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version