Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <-----------GT1       <-------TEIL   --------->AHL20(2)               <----------DOF2 <---------AtLEC2  --------->YAB1                  <---------ANAC46 -------WOX13(1)  <---------ATHB12                 <---------ANAC58                          -------- ---->ATHB12   --------->MYB46(3)                  <---------ANAC58                        <--------P ----ATHB1    --------->ANAC58                <---------ANAC58                 <---------ANAC55(2) -----ICU4    --------->ANAC46         <---------AHL20(2)   <---------At4g35610----------->GT1 --->ICU4     --------->ANAC58 ------->GAMYB  <---------AtLEC2            <---------CCA1(2)<---------MYB52(1) ----YAB1    ------->TEIL  <-----------GT1    <---------ANAC58          --------->YAB1   <---------MYB46(3)   attgcaaggctcatgcacccatcataaatttaaccctctattttttttgcatgtcgtctttccgcttctctctatcgtatcatgtgaatagtggttagtt  2726800                                                   <------MYB83                                                   <------MYB46(1)                                                   <---------ANAC46                                                  --------->MYB59                                                  <---------MYB46(3)                                                  <------MYB83                                             <---------TOE1(3)                                    <---------ARR14(2)                                    --------->ARR14(2)                                    <---------ARR11(1)                     --------->MYB111(1)                                   <---------CCA1(2)                       --------->MYB46(2)                              --------->ANAC46    <------MYB46(1)          ----------->GT1                  <---------AHL20(2)<---------ARR11(3)                     <---------MYB46(3)          --------->DAG2      --------->ANAC58  --------->ALFIN1           --------->MYB52(2)<-------         ---------->DOF2  <-----------HVH21  <---------TOE2(3)            <--------P       <--------- ->MYB52(2)   ----------->GT1 --------->ANAC58  <--------P     ---------->ID1    --------->AtLEC2   tttttttgggtaaaagtagtttaattcccctcaggccatatctgtttgaggttgggtcttattttgttctcttggggtagttaatgcaaaactcttttat  2726900                                                   --------->ZAT2                                   <------MYB83  <---------WRKY38(1)                                   <---------MYB46(3)                                   --------->MYB52(2)          --------->AtLEC2                                   <------MYB46(1) <---------ZAT2                                  <---------AtMYB61--------->At4g35610                        ---------->DOF2          --------->ZAT18     <---------MYB46(3)--------->YAB1---------->ID1<---------At4g35610                       --------  <----------DOF2     <---------ATHB12           <---------ZAT14                            --------- --AHL20(2)         --------->WOX13(1)           <---------WRKY12 ---------->DOF2           <-------- -DOF2            <---------YAB1 <---------MYB52(1)----------->RAV1(2)                 --------->YAB1   tgttctttggttactccattatcaatcaaagtatcgttggtcgctcttgagtcaactgggtcttcatgaaaagagttggaactaagtgatagtaatgtta  2727000                     <---------ARR11(3)                     --------->ARR11(3)              --------->YAB1                                     >>>>>>>>>RAP2.2            --------->ANAC58                                   --------->ARR11(3)          --------->MYB52(1)  <---------LBD16   --------->RVE1(1)                          <---------ARR11(3)   --------->ETT(2) --------->ALFIN1   --------->CCA1(1)                         --------->RVE1(1)     <---------ETT(2) ->TOE2(3)  --------->ANAC58        <---------WOX13(1)    --------->AHL20(2)       ---------->ARF1 -->GT1   ---------->DOF2         --------->ATHB12      <----------DOF2        <---------ANAC58 -ZAT6 --------->ALFIN1>>>>>>>>>RAP2.2         <----------DOF2--------->CCA1(1)<---------ANAC58   <--   aaactgggggtggaaagcataaatatctaaaacaattgattgaaaccggcttaatgggctttaaatatctaaaactaatgagcttgtcgacccaaacggg  2727100                                    --------->ANAC58                 --------->ALFIN1   --------->ANAC58         --------->ANAC58        <---------SPL7         --------->ANAC58       <---------ANAC58                                 ----------->GT1        --------->RAP2.6(3)     <---------ANAC58                    <---------ANAC46        --------->SPL7     --------->DAG2           --------->AHL20(2)   --------->ZAT6      --------       --------->MYB52(1) ---------->DOF2        <---------RAP2.6(3)<---------ANAC58      --------->DAG2 --------DOF2  <XXXXXXXXXXXXXXXXXXXXMIR2934    ---------->ID1       <---------ANAC58     ---------->DOF2   ctttaaactgaacggcaaggtgtttgtataaagggcgttcgcaaaccttgccgttttaatataaactgtgtcgtttcactagaaggttttataaagtgta  2727200                                          --------->ANAC58                                       <---                                          --------->ANAC58                                       <---                                        ---------->DOF2                                          ----                                       <------ZmHOX2a(1)                                       <-----                                      --------->ANAC58                                         ------                                     <---------TOE2(2)                                      ---------                                     <---------TOE1(2)                                      <------NtERF2                               <---------At4g35610                                         <---------SPL7                               <---------ZAT2                                             <---------RAP2.6(2)                               --------->At4g35610          <---------ZAT18               <---------ANAC58                               --------->ZAT2         <---------ARR14(2)                  <---------ANAC58                    *TSS   --------->TOE1(3)          --------->GLK1(2)             <<<<<<<<<WRKY18    <----------DOF2 --------->AHL20(2)--------->ANAC58--------->ARR14(2)            <---------WRKY12 --->GT1 ------->TEIL      --------->TOE2(3) <---------GLK1(1)            --------->DAG2  <---------ANAC46   aaacctctttgcacctctcagattaaaaacctcagctcgcaggaaagaaatcagcgaatttgtgaacttcagagaaaaattggtcgtcaatggcgtctgc  2727300                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                               <-----                                                                                            <--------             --------->ANAC58                                                               <--------      --------->ARR14(2)                                                                    <--------      <---------ARR14(2)   <---------ANAC58                                               --------->LBD16 ------------AGL15         <---------ANAC58   <---------ARR14(2)                          ------>NtERF2 -------DOF2 --------->ANAC46                 --------->ARR14(2)                         <---------DEAR3(1) ----------->AGL15         <---------ANAC46   <---------GLK1(2)============================HOX2a_HOX2a ----At4g35610   <---------RAP2.6(3)       <---------TOE1(2)   <------ZmHOX2a(2)    ------>ZmHOX2a(1) --->At4g35610  --------->RAP2.6(2)<---------DAG2  <---------ANAC58         <------NtERF2--------->ANAC46 >ATERF1(1)  --------->ANAC58      <----------DOF2 <---------ANAC58  --------->MYB52(1) <---------LBD16   tctatgtagaactgcaagccgtcttcgttccgttcaactttttcgtcggattcgcgtctccagcgatctactatcggcatcgtctccttctccggcgtgc  2727400      ------>NtERF2   ------>NtERF2  ----------->HVH21  --------->DEAR3(1)                        <-------TEIL  --------->ANAC46                         --------->ARR14(2) -------At4g35610                          <---------MYB52(1) -------GLK1(1)                          <---------DEAR3(2) --->TEIL                 <-----------GT1<---------MYB46(3) --TEIL                --------->GLK1(1)------>ZmHOX2a(2)      --------->At4g35610 -ANAC46               <---------GLK1(1)===========================HOX2a_HOX2a                  <---- -ANAC58     <-----------HVH21     ------>ZmHOX2a(1)           <---------At4g35610              ----- -ANAC58     <-----------TGA1     --------------------->WRI1------>ZmHOX2a(1)         <----------DOF2   atctccgacgcgcttcgtcatggagatttctctcttcctcgatcggttcgtcatttcttctcctcatctgaattcattttctaattctctttgttttgag  2727500                                     --------->MYB52(1)                                    --------->ZAT14                           --------->At4g35610                                    <---------ZAT14                     --------->ARR11(3)      <----     <---------WOX13(1)           --------->ANAC46                      <---------ARR11(3)    <------ -----At4g35610                   --------->ANAC55(2)             <------ZmHOX2a(2)        <---------At4g35610 ---->At4g35610  <----------DOF2<-----------GT1        <-----------------AGL2 <---------At4g35610   ctctctaattgctatcttccttttgcagtttttttcacttaactgtggaatcgaaatgctgaaaatggatcagagatgtttgctgagtacttctgcttct  2727600                                      --------->ARR11(3)                                      <---------ARR11(3)                                      <-----------ARR10               ------>ZmHOX2a(2)         -----                                      --------->ARR14(3)            <---------ARR14(2)         <-----                                      <---------ARR14(3)            --------->ARR14(2)        <------                                      --------->GLK1(2)            <------ZmHOX2a(1)   <---------MYB46(3)                             ----------->GT1                       ==================================            --------->YAB1   --------->LBD16               --------->GLK1(2)       <---------AtMYB61 -----YAB1  <---------ICU4 <---------LBD16<---------LBD16 <---------GLK1(1)     <---------YAB1------- ---At4g35610      <-----------RAV1(2)--------->ARR14(2)  --------->GLK1(1) <---------GLK1(1)<-------   gatactacctcgaaacatgactcaggtaaaccggaaacaaaatcttcggagaaaaatgagaaatctggaggatcggagagttctgatggtggttcagatc  2727700  Previous    Next  AGI:  At3g08947.1    Description:  pseudogene, importin beta subunit, similar to importin-beta1 GB:BAA34861, importin-beta2 GB:BAA34862 (Oryza sativa); frameshift; blastp match of 68% identity and 8.2e-309 P-value to GP|3983663|dbj|BAA34861.1||AB011270 importin-beta1 {Oryza sativa (japonica cultivar-group)} Range:  from: 2723294    to: 2726947    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g08950.1    Description:  electron transport SCO1/SenC family protein. similar to electron transport SCO1/SenC family protein [Arabidopsis thaliana] (TAIR:AT4G39740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50122.1); contains InterPro domain Synthesis of cytochrome c oxidase, Sco1/Sco2; (InterPro:IPR017276); contains InterPro domain Electron transport protein SCO1/SenC; (InterPro:IPR003782); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335) Range:  from: 2727220    to: 2729606    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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