Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------MYB52(2)      <---------At4g35610      --------->ZAT2      --------->At4g35610      <---------ZAT2                        ----------->RAV1(1) ------->YAB1                             --------->MYB46(3) -------YAB1                             ------>MYB46(1)                        <---------AHL20(2) -------AHL20(2)       <---------ALFIN1  ------>MYB83                          --------->AHL20(2) ----->AHL20(2)  <-----------GT1    <-----------GT1                     --------->MYB52(1)-----------   ataatagcagctcacgtttataccatcaccctgatgaaaaaccatccaacacaattgaaactcaatttcaaaccagacggattaaatggagccagaaaat  2685800                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                ----------->GT1       --------->HSFB2a(2)                     -------                               --------->ANAC58       <---------HSFB2a(2)                    --------                               --------->ANAC58      ------>ZmHOX2a(2)                     <---------ATERF1(1)                             --------->MYB52(1)  <---------YAB1                        --------->LBD16                     --------->ATHB12     --------->TOE2(3)     ------>ZmHOX2a(2)    <---------LBD16  --------->GLK1(1)  <---------ICU4       --------->TOE1(3)   --------->ARR11(3) <---------GLK1(1) >GT1  ---------->DOF2--------->TOE1(2)  ----------->RAV1(2)  --------->AGP1     --------->GLK1(1)<--   acacaaatccaaagctcaattgatcatgggaaaacggaaaataacctgaatatgatcgagaactgatctagcagagttgagagaaatcccgcgctccgcc  2685900        --------->LBD16       --------->ANAC58       --------->ANAC46       --------->ANAC58      <---------LBD16    --------->AtMYB61  <-----------ARR10  ------->TEIL ------ATERF1(1) -->NtERF2 ----->MYB52(1) ---->DREB2C(2)                                                                                   <-- ------>HVH21                                                                                     --- ---->At1g77200                                                                                <----- ---->DEAR3(1)                                                                                 ------ ---->RAP2.3(3)                                                                                <----- --->ERF1                                              ------->GAMYB                         -------- --->ATERF1(1)                                         ----------->HVH21                     -------- --->RAP2.3(1)                                        --------->MYB46(3)            <---------LBD16 --->DEAR3(2)                                         --------->DEAR3(2)   <---------ANAC46 --------- --->ORA47(2)                                         <------------AtMYB77<-------TEIL  --------->ARR14(2) -->At4g35610                                       --------->ARR14(2) <---------HSFB2a(1)------>ZmHOX2a(2) ---At4g35610                                       <---------ARR14(2) <---------HSFC1(2)<---------GLK1(1) ---ATERF1(1)                                       --------->MYB52(1) --------->HSFC1(2)--------->GLK1(1) -->LBD16                                        --------->ANAC46 --------->HSFB2a(2)   <---------ARR14(2) ->DEAR3(1)         <---------ALFIN1             --------->ANAC55(2)   <---------DEAR3(2)<------ZmHOX2a(2) ----NtERF2      --------->PCF2         <---------CCA1(2)         <---------HSFB2a(2) --------->LBD16   gacggacctccgcaaatgagtcccaccctcagactcttactcatctcttgtccgtaaccgacagccttcgagacggttcgtatagctccggatccccgat  2686000                                                                              <------NtERF2                                                                             <-----------HVH21                                                                            --------->DEAR3(1)                                                                           --------->ATERF1(1)                                                                           --------->RAP2.3(1)                                                                          ------>NtERF2 -------ANAC55(2)                                                      --------->ZAT14 ------>ANAC55(2)                                                      --------->REM1(2) ----MYB52(1)                                         <---------At4g35610 --------->At4g35610      -- --->ARR14(2)                                         --------->At4g35610 <---------At4g35610      <- ----ARR14(2)        ------->TEIL              <---------YAB1          <---------ZAT14             <- ->LBD16            <---------AtLEC2         <---------At4g35610       --------->SPL7             <-- ->ANAC46   ---------->DOF2              <---------ARR11(3)         <---------ANAC58            ----- >LBD16  --------->LBD16 ------->TEIL    --------->ARR11(3)         <---------ANAC58        ------->TEIL   acttattcatccccaaaagcatgcatgtactctcgctcagtgagttcttctgattcagcttcagagttgtccgtgcagccgtcgctactcgatgaacatc  2686100                                               <------NtERF2                                             --------->ANAC58                                             <---------ETT(2)                                             --------->RAP2.6(2)                                             --------->ETT(2)                                             --------->ANAC58                                            --------->SPL7                                           <---------MYB52(1)                        >>>>>>>>>SPL5                                          <---------DEAR3(2)                         --------->SPL7            ------>ZmHOX2a(1)             <---------SPL7                             >>>>>>>>>SPL4          XXXXXXXXXXXXXXXXXXXX>MIR779.1 --------->ATERF1(1)                          >>>>>>>>>SPL1      ------>ZmHOX2a(1)                 <------NtERF2                              <---------SPL7   ------>ZmHOX2a(1)                   <---------RAP2.3(1)      ---------->DOF2  --------------->AtSPL8 ------->ARR14(2)                      ------>NtERF2   ------>NtERF2           <-----------GT1  <---- --------ARR11(1)                     =====================================bZIP_DOF--------->LBD16<-- --------ARR14(2)                  ----------->TGA1   --------->ANAC58 --------->At4g35610   <------- -------CCA1(2)    <---------MYB52(1) <---------TGA1a --------->ANAC58 <---------At4g35610 --------->GLK1(2) ---->TOE1(1)     ------>NtERF2    ----------->HVH21  --------->ANAC46 ----------->GT1    --------->YAB1   gtatcctccttctcctatgccgctagtcatcgaaaaactgacgccggtcgccatggacgccatctccaaaggaagcttaattctccgtacaataatcttt  2686200                                                                                                -----                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              -------                                                --------->ANAC46                              <------                                                ==========================================bZIP_DOF                      <---------AHL20(2)        --------->TGA1a                       --------->MYB52(2)                  <---------AHL20(2) --------->YAB1    ---------->DOF2                <-----------RAV1(1)              <----------DOF2  --------->TOE2(3)==================bZIP_DOF            <---------MYB46(3)              <---------DAG2   <-----------HVH21--------->ANAC58               <----------DOF2<------ -------GT1<---------ARR14(2)  <-----------TGA1 --------->ANAC58               ====================== ---------GT1 ============================================bZIP_DOF         --------->DAG2     <------ --ICU4   <------ZmHOX2a(1)   *TSS--------->WOX13(1)----------->GT1       ---------->DOF2    --------   acacctccttgaggaactttttatttttttcatcgtcagtcagaactcacaagtcagtaaaacagtcatcgaaacaaaaagctttcatttgttgcacgcg  2686300                  <-----------HVH21                ------->PIF4                ------->PIF5                <-------MYC4                ------->MYC4                ------->MYC2                <-------PIF4                <-------MYC3                <-------PIF5                ------->MYC3                <-------MYC2               <---------TGA1a                                                                     <-               --------->O2                                                                       >>>    <----------DOF2                                                                               >>>    =====================bZIP_DOF                                                                ---- --------->ARR11(3)                                                                             ----- <---------ARR11(3)  ----------->GT1                                 --------->TOE2(3)          <---- ---->LBD16    --------->TGA1a                         <---------GLK1(2)            ------>ZmHOX2a(2) >MYC2         <---------O2                            --------->ARR11(3)          <------ZmHOX2a(2) >PIF5         ====================================MYC_MYB          ----------------->AG      ------- -PIF5         --------->ANAC55(2)       --------->ARR14(2)       <<<<<<<<<GT-1   --------->ARR14(2) >MYC3       <------------OsbHLH66       <---------GLK1(2)        <-----------GT1 <---------ARR14(2) -MYC2  <---------ANAC58                 <---------ARR14(2)----------->GT1        --------->ARR11(3) ---LBD16================bZIP_DOF     <------------MYB.PH3(1)<---------YAB1       <---------ARR11(3) ========================bZIP_DOF    >>>>>>>>>MYB98  <---------TOE1(2)        ---------->DOF2 <------ -MYC3  <---------ANAC58            --------->MYB52(1) <---------ARR11(3)  --------->YAB1    -------- ->ANAC46<----------DOF2           ------>ZmHOX2a(1) <---------TOE2(2)    <---------YAB1   --------->YAB1   ggagagctttgctttgcacgtgtcagtaaaaaatgtcctaacggatttttgttcgtagattttgttattaaccaaaatgataaagatcgtcattcattat  2686400       --------->ATHB12       <---------ICU4       <--------ATHB1       -------->HAHB4      <---------ATHB12      --------->ICU4      <---------YAB1     <---------TOE2(3)  <---------YAB1 --------WOX13(1)                                                          <---------ANAC46 >>>>>>ARR1                                                                <---------ANAC58 >>>>>>ARR2              --------->ATHB12                                  <---------ANAC58 ----->ATHB12           <---------YAB1                                   <---------AHL20(2) ---->ICU4         <---------At4g35610                                <--------HAHB4 -----YAB1         <---------CCA1(2)     <---------GLK1(1)            --------->YAB1 -->YAB1  <---------MYB46(3)        ---------->DOF2         <---------GLK1(2)   <---------GLK1(2) ---ICU4 <---------WOX13(1)  --------->YAB1   ------>ZmHOX2a(1)       <---------ICU4            <---- ->ICU4--------->YAB1  <----------DOF2   --------->GLK1(1)  --------->ARR11(3)  <---------ARR14(2)   gattgttaatgattgttagtcatctctttattgataaccaaagaaatcctagtgagtgatcagatttttcgataattacttggattctgacataaactgg  2686500                   <---------ANAC46         --------->YAB1        <---------ATHB12       ------>MYB46(1)       ------>MYB83<---------ANAC58                                                                --      --------->WOX13(1)  ----------->GT1                            --------->ANAC46              <-  >>>>>>>>>>WRKY38 <---------ANAC58                     ------>ZmHOX2a(2)  ------->GAMYB           --  >>>>>>>>>>WRKY43 <---------ANAC55(2)                 <------ZmHOX2a(2)  --------->MYB46(3)   <-----  >>>>>>>>>>WRKY26 --------->ANAC55(2)           --------->MYB52(1)--------->MYB46(3)  ---------->DOF2  <-----------GT1 <-------TEIL        --------->ANAC58<---------ARR14(2)--------->MYB52(1)     <----- -----MYB52(1) --------->CCA1(2)      --------->ANAC58--------->ARR14(2)----------->RAV1(1)   -------   tatttgaccaatcatagagatgcgtagcatgaaaaattgcaagcctatttccaacggatcccaacttgaacaaacaacagacaacatttcaaagcatcgt  2686600          --------->ARR14(2)          <---------ARR14(2)   ---------->DOF2                                                                              ----- ------->ANAC58                                                                           ---------->DOF2 --------ANAC55(2)             <-----------GT1                                          --------->AHL20(2) ------->ANAC58             <----------DOF2                                             <---------AHL20(2) ------HVH21            <---------MYB52(1)           <-----------------AG               --------->YAB1 ------TGA1           <---------ICU4  <---------AHL20(2)      <------ZmHOX2a(1)      --------->YAB1 -->bZIP60(2)         --------->AtMYB61    <-----------GT1  --------->MYB59   ---------->DOF2   <----   cacgaaaatgcaaattttcttccaccattacttttaccattttttttacacatgaaacaaattaggaaacagaatgacttaaaagattaataaaaaggaa  2686700  Previous    Next  AGI:  At3g08840.1    Description:  D-alanine--D-alanine ligase family. similar to unnamed protein product [Vitis vinifera] (GB:CAO48819.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain D-alanine--D-alanine ligase, N-terminal; (InterPro:IPR011127); contains InterPro domain Pre-ATP-grasp fold; (InterPro:IPR013817); contains InterPro domain PreATP-grasp-like fold; (InterPro:IPR016185); contains InterPro domain ATP-grasp fold, subdomain 2; (InterPro:IPR013816) Range:  from: 2682459    to: 2686230    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g08850.1    Description:  ATRAPTOR1B/RAPTOR1B (RAPTOR1); nucleotide binding / protein binding. similar to ATRAPTOR1A/RAPTOR1A (RAPTOR2), nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G01770.1); similar to transducin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21850.1); similar to transducin/WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAR82959.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ59213.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-li Range:  from: 2686589    to: 2695306    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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