Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ------>NtERF2         ------>ZmHOX2a(2)               --------->RAP2.6(2)        <------ZmHOX2a(2)               <---------RAP2.6(2)       <---------ARR14(2)              --------->RAP2.6(3)                                        <--       --------->ARR14(2)           ---------->DOF2                                               <--     --------->LBD16             <-----------HVH21                                               <---    --------->LBD16             --------->ANAC58                                                 ----   <---------LBD16              --------->ANAC58                                         --------->KAN4(2) -------->ANAC58                --------->bZIP60(2)<---------YAB1                        --------->WOX13(1) -------->ANAC58         <---------At4g35610  --------->bZIP60(2)  --------->WRKY12    <------ZmHOX2a(2) ------>GAMYB            --------->At4g35610----------->RAV1(1)    --------->WRKY38(1)<---------ARR11(3) ->WOX13(1)--------->LBD16     <-------TEIL <---------ALFIN1 ----------->RAV1(1)      --------->ARR11(3)   aaacgcccggatccagagtagatagagagcaggctcgtcatagcggccacatcgtgattaaacccacatttgaccacaagggaatgaagatcaatcccaa  2678800                         <---------ANAC58                         <---------ANAC58                    <---------ANAC58                    <---------ANAC58                                                 ==============HOX2a_HOX2a                    <---------AtLEC2       <------MYB83                   <---------ANAC58 -------ANAC58     <-------TEIL            <------MYB46(1)                <---------ANAC46 -------ANAC58 <-----------RAV1(1)         ----------->GT1                <---------ANAC58      <---- ------ZAT2 --------->ARR14(2)      --------->MYB52(1)                   <---------LBD16    <------ZmHOX2a(2) ----->ZAT2 <---------ARR14(2)     ---------->DOF2                  <---------YAB1   <------ZmHOX2a(1)   gcttgcgactcgaggctctggtgcatgccttgagaaccaaagggaaggtgaaaccatggaggtagagaccatgtttgcggatggagaggaagagatcgag  2678900                          --------->ANAC58                 --------->ATHB12                --------->ICU4                                           <---------YAB1            <-                <---------YAB1                                       <---------ANAC58              <-             --------->ICU4                                          <---------ANAC58          ------           --------->CCA1(2)                                <---------LBD16                    <-----  <---------AtLEC2        --------->ANAC58              <-----------RAV1(1)                <------ZmHOX2a(1)  <---------ANAC46    <---------TOE2(3)            <------ZmHOX2a(1) <---------ANAC46   --------->CCA1(2) -----TOE1(2)<---------YAB1      --------->YAB1  ----------->GT1    --------->MYB59 <------ZmHOX2a(1)   ggtttcatggaagagatgattattgacgaagccattgatgagactattgtagaggaaaatgttggggaattgggtatgagagaagaggagataggagtat  2679000                                                         --------->ALFIN1                                                         <---------ANAC46                                                    <---------bZIP60(2)           --------->O2                                  <---------MYB46(3)<---------O2                  <---------bZIP60(2)                                 <---------AtMYB61  <---------ANAC58              --------->TGA1a----                                <------ZmHOX2a(1)   <---------ANAC46              <---------TGA1a<---        <------NtERF2         --------->ALFIN1      <---------ANAC58<-------GAMYB <---------O2 <-----      <---------ANAC46       <------ZmHOX2a(1)     <------NtERF2    ========================MYC_MYB     <---------LBD16    <----------DOF2        <------MYB46(1)     <---------MYB46(3)  <---------ARR14(2) -----MYB83            <---------ANAC58        <------MYB83    --------->ALFIN1   <---------ANAC46 -----MYB46(1)         <---------ANAC58     <------ZmHOX2a(1)  <---------AtMYB61  <---------ANAC58  - --->ARR14(2)       <---------ZAT18  ----------->HVH21--------->ALFIN1            <---------ANAC58 <- ----ARR14(2)       --------->ZAT18<-------GAMYB --------->ALFIN1  --------->MYB55(2)  --------->ARR14(2)   ttggtttggcggaagaagagagttcgcttgaggaggaggttgacgaggaaggtgtcgtggtggagatggtggttaatgagagagacgtggatttgtttca  2679100           <---------ANAC58           <---------ANAC58          --------->ABI4(2)                         <-----------RAV1(1)          <-------TEIL                              <---------REM1(1)      <---------DREB2C(2)                          <---------TOE2(3)      <---------DEAR3(1)                      <----------DOF2    --------->MYB52(1)                 <---------At4g35610   ----------->HVH21                   =========================RAV  <---------WOX13(1)                   --------->ZAT2 ----->At4g35610                       --------->At4g35610              <---------bZIP60(2) ------At4g35610                       ----------->RAV1(2)           ----------->TGA1 ------RAV1(2)                        <-----------RAV1(1)            ----------->HVH21 -------->ATHB12  <---------ANAC46   ------>ZmHOX2a(2)   <---------ANAC46            <---------DAG2 < --------YAB1  ----------->HVH21    <---------At4g35610 <---------At4g35610          <----------DOF2<   gatgattgacggtgcatgcgacggagattagagttttgatctgctggacttttgatgttgctgatggaacggtgacgatgctcatcgcttttttaaaaca  2679200                    <-----------GT1             ------------>CBF            --------->LBD16                                                                         -            ------>NtERF2                                                                        <---           --------->ANAC46                                                                      ----           --------->ANAC58                                           <---------ANAC46          <----           --------->ANAC58                                          <------------------------ANAC81<         ------>MYB83 --------->ZAT6                      --------->AHL20(2)        ---------->ID1  -         ------>MYB46(1)                                  <---------AHL20(2)  <---------AHL20(2)----- <---------ZAT6    <-----------GT1                       --------->YAB1 <---------MYB52(1) ---------- ---------TOE2(3) --------->AHL20(2)          --------->AHL20(2)     ---------->ID1 <---------------AGL15 ---------TOE1(3) <---------AHL20(2)        <----------DOF2       <----------DOF2   --------------->AGL15   ttagggttacctcccgccaatttatcactcttgaaaatggacatcgctttaaattcgaattttaatgtcttttcgtttatttttttgtttttttggtaat  2679300                                                                 <------------CBF                                                               <---------YAB1 -------->YAB1                                                --------->AHL20(2) ------ICU4                                               ----------->GT1                      ------ ----->YAB1                                             <------------CBF                    <-------- -----YAB1                    <----------DOF2         --------->AHL20(2)                    <-------- ---------AHL20(2)       ------>ZmHOX2a(1)            --------->AHL20(1)                    <-------- -------->AHL20(2)     ------>ZmHOX2a(2)              <---------AHL20(2)                <------------CBF ---->ICU4      --------->ARR14(2)                   --------->AHL20(2)             ---------->ID1 ->GT1          <---------ARR14(2)                   <---------AHL20(2)            <-----------GT1   aataatatgcctgtatcagatttgatcctatgcttttgtatcaaactaatccaaattaaattgttaaaattgttttctctcattttttcgcattgcttag  2679400                                                                   --------->At4g35610                                                       <----------DOF2   <----------DOF2                                     <---------------AGL15 ------>ZmHOX2a(1)                                     --------------->AGL15 ----->ARR10                                          <-----------------AGL3           <---------ARR11(3) -ANAC58                                              <-----------------AGL2       --------->YAB1 -ANAC46         --------->TOE2(3)                    <-----------------AGL1       <---------AtLEC2<- -ANAC58   --------->YAB1                         <----------DOF2  <---------At4g35610 --------->ARR11(3)   ttcctcttttgaatcacaacctcataagaagaatagctaatttagcattactcttttctttttttggacagctaatatagcattagcatgatattgcaaa  2679500                                                                         --------->YAB1                                                                    <---------AHL20(2)                                                              <----------DOF2                                                              <---------DAG2                                                           <---------ALFIN1              <---------ARR11(3)                          ------>ZmHOX2a(2)              --------->ARR11(3)                         <------ZmHOX2a(2)             --------->AHL20(2)                         <---------ARR14(2)   ----------->HVH21         --------->AHL20(2)          --------->YAB1     --------->ARR14(2) --------->At4g35610      --------->YAB1         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->AHL20(2)         <----- ----------GT1--------->AHL20(1)    <---------ATHB12    --------->PCF2<-----------GT1   <------NtERF2   tttacaattcataaaatatataccgaaatgaaattcaaatcatagctcatacatatgggatccactttattttaatcatatgacgaaggcatcgaattta  2679600                                  ---------->DOF2                                --------->ANAC46                                --------->ANAC58                       <---------TOE2(3)                     --------->ICU4                    <---------KAN4(2)                            <---------ANAC58              --------->TOE1(2) --------->ANAC58     --------->ANAC46          <---------At4g35610  <        --------->ANAC46----------->GT1 ---------->DOF2--------->ANAC46        --------->At4g35610<-- ------GT1--------->ZAT14 --------->AHL20(2) ---------->DOF2     <---------ANAC58     --------->ZAT18   caaaaaacacactaaacttgggaataatgtaaatacgaaagacaaagaaaagcttacacaactctctgcgtagcaagatggagcagagtgcgaaagaatt  2679700  Previous    Next  AGI:  At3g08820.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to vegetative storage protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABG22332.1); similar to Os11g0109600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065554.1); similar to hypothetical protein OsJ_031375 [Oryza sativa (japonica cultivar-group)] (GB:EAZ17166.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2677124    to: 2679185    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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