Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->ANAC58                                                                                --------->ANAC58                                                                                --------->ANAC46                                                                                <---------O2                                                                           ------->GAMYB                                                                           --------->RAP2.6(2)                                                                           --------->ANAC58                                                                           ===============MYC_MYB                                                                           --------->ANAC46                                                                           --------->DEAR3(1)                                                                           --------->ANAC58                                                                           --------->DREB2C(2)                                                                          --------->MYB46(3)                                                                          ================MYC_MYB                                                                          <---------MYB55(2)                                               --------->ANAC58           --------->DEAR3(2)                                               --------->ANAC46           <------------AtMYB77                                               --------->ANAC58          ------>MYB83                                              <---------LBD16            ------>MYB46(1)                                              ------>ZmHOX2a(2)          =================MYC_MYB                            <------ZmHOX2a(1)<------ZmHOX2a(2)           -------->P                            =========================HOX2a_HOX2a        --------->MYB52(1)    =======                            ========================HOX2a_HOX2a         --------->MYB55(1)    ------>ZmHOX2a(2)                         ===========================HOX2a_HOX2a        --------->MYB46(3)    ========                         <------ZmHOX2a(1)  ------->TEIL     --------->ARR11(3) --------->TGA1a                         ============================HOX2a_HOX2a       --------->AtMYB61     <------ZmHOX2a(2)                       --------->ALFIN1     <---------ARR14(2)<---------GLK1(1) --------->O2<--------                      ===============================HOX2a_HOX2a      --------->DEAR3(2)    ---------                      ==============================HOX2a_HOX2a       --------->MYB46(3)    <--------              --------->ANAC58              --------->ARR14(2)--------->CCA1(2) <---------TGA1a              --------->ANAC58   <----------DOF2--------->LBD16  --------->YAB1 --------->bZIP60(2)    --------->LBD16   <------ZmHOX2a(1)  <---------WOX13(1)  <---------ARR11(3)------>NtERF2---------   acaatccagaattgagacgctagaggaggaggacgctttgttgatggatccgcaaatgttatagatatcagaaccaaccgccacgagactcgaagatcgt  2676300              --------->LBD16             <---------LBD16         <---------MYB55(2)         <---------ABI4(2)         --------->MYB46(3)    <------ZmHOX2a(1)                                                                     <----------CDC5 ==========HOX2a_HOX2a                       --------->O2             <---------TOE1(3)  <---------At4g35610 ==========HOX2a_HOX2a                    --------->MYB46(3)          <---------TOE2(3)  ----------->RAV1(2) -ARR11(3)  <---------LBD16             --------->ARR14(2)      <---------TOE1(2)        --------->At4g35610 >ARR11(3) --------->MYB52(1)           <---------ARR14(2)      <---------TOE2(2)      <---------RAP2.6(2) -ARR14(2)--------->AtMYB61          --------->YAB1         ------>ZmHOX2a(1)         <---------At5g28300 >ARR14(2)<---------ALFIN1       ---------->DOF2       ------>ZmHOX2a(1)              <---------LBD16   acattaggagaaccaccgggaattgggactctagccaaagcataaccacttgacttcctctcctcataggttagggtttgatcaggtttacggctgaggc  2676400                                              ------>ZmHOX2a(2)         <---------ANAC58                                             --------->GLK1(1)          <---------ANAC58                                             <---------GLK1(1)     <---------At4g35610                                 --------->ANAC46                  =================bZIP_DOF                                 --------->ANAC58                  <---------bZIP60(2)                            <---------At4g35610                    --------->At4g35610                            --------->At4g35610          <---------HSFB2a(2)                           --------->ANAC58  <------ZmHOX2a(2)     <---------O2                           --------->ANAC58 --------->ARR11(3)     <---------TGA1a                          --------->SPL7    <-----------ARR10      ==================================                         <---------MYB52(1) <---------ARR11(3)     ----------->RAV1(2)                        <---------SPL7      <---------ARR14(2)   --------->ZAT18                   --------->ZAT18          --------->ARR14(2)  ----------->HVH21                <---                ---------->DOF2  --------->ANAC58        --------->HSFB2a(2)                     ====  --------->TOE1(2)--------->ZAT14          --------->AGP1 --------->LBD16    ---------->DOF2--------  --------->TOE2(2)<---------ZAT14          <---------AGP1--------->LBD16<----------DOF2<---------REM1(1)   taaaccagcgataaccagtagagcaccgtaagcacacgtagagacagatctcggtgtttcccgagagtgacctggctttgtaaagctctggtgaagctag  2676500                    --------->ANAC55(2)                    <---------ANAC55(2)                    <---------ANAC55(1)                    <---------ANAC58                    <---------TGA1a                    --------->TGA1a                                                                <-                    <---------O2                                                                   <-                    <---------ANAC46                                                               <-                    --------->O2                                                                   <-                   <-------TEIL                                                                 -----                  --------->CCA1(2)                                                             -----                 <---------ARR14(2)                                                            <-----             <---------LBD16                            <-------MYC3                         <-------      ---------->DOF2                                   ------->MYC2                         <-------      ========================bZIP_DOF                  ------->MYC3                       --------->MYB52(1)   <------ZmHOX2a(2)<---------ANAC58                    <-------MYC2                      ----------- ================bZIP_DOF                              <---------ANAC58                   ----------- ---ZmHOX2a(1)   --------->ARR14(2)   ----------->GT1  <---------ANAC46             <---------HSFB2a(2) =========HOX2a_HOX2a  <-----------HVH21      --------->YAB1  ----------->ARR10     --------->HSFB2a(2) ->TOE1(2)--------->ARR11(3)     <---------ANAC46      <---------ANAC58            <---------LBD16 <-   gagagatcgaaagctctcggatacgtgtgagagagtcggatagtacaatcttgagacgcgtgcgaagatgctcaatagcacatcatcgggaagtgacggt  2676600                                ------>MYB83                              --------->DREB2C(2) --------bZIP60(2)            --------->DEAR3(1) --------ANAC58               ------->GAMYB                       --------->MYB52(1) --------ANAC58               --------->MYB46(3)           --------->ANAC58 --------ANAC46               --------->DEAR4(1)           --------->ANAC58 ------>TGA1              --------->MYB46(3)             <--------P                                 - ------>HVH21           <---------WRKY18(1)          <---------ANAC46                          ------ ------HVH21           --------->WRKY45              <---------LBD16                       -------->P --DEAR3(1)            --------->WRKY38(1)          <---------LBD16<---------LBD16        --------->WOX13(1) --ANAC46              --------->WRKY12      <----------DOF2     --------->WRKY12    --------->WRKY12 >HVH21          <---------RAP2.6(2)       ------>ZmHOX2a(1) --------->ARR11(3)      --------->WRKY38(1) >TGA1          <---------LBD16 ------>MYB46(1)  <----------DOF2 ----------->HVH21  <---------MYB52(1) --------ANAC55(1)   <----------DOF2 ------>ZmHOX2a(1)--------->LBD16              <-------GAMYB   *TSS   gacgggttttgggtcgaatgcggctttgaccaccgactcctcttcctctttctttccgggtaagacattgacggagttgaatcgccgttgatcaaccagg  2676700                                      <------NtERF2                                      ------------>CBF                                     --------->RAP2.6(2)                                     ------>NtERF2                                    <---------RAP2.6(2)                                    <---------                                    --------->ATERF1(2)                                   <---------ICU4                                    <---------ATERF1(2)                                   --------->ATHB51                                    <---------DEAR3(1)                                    --------->YAB1                                    <---------ANAC46                               <---------MYB52(1)                                   --------->RAP2.6(3)           <---------ANAC58 --------->At5g28300                                 --------->ALFIN1      <---------AHL20(2)         <---------RAP2.6(3)                            <-----------RAV1(1)      <-----------TBP              <-------GAMYB                      <---------AHL20(1)           --------------->AGL15<----------DOF2  <---------YAB1                      --------->ARR11(3)     <-----------GT1     <---------ANAC46<---------MYB46(3) ---------->GT1       <---------ARR11(3)   --------->YAB1        <---------ANAC58----------->GT1----- --->LBD16   <---------GLK1(1) <-----------RAV1(1) <---------------AGL15<---------DAG2<---------YAB1   gaatgtaatttagggatttgtggatatattttgttgtggcggcaatattactactatttatagagttgcttgggctttttgggccgttactataattgca  2676800                                                                                 --------->ANAC46                                                                            <-----------GT1 ---------                                                                          <---------ANAC55(2)                                      --------->ATHB12                    --------->ANAC55(2)   <---------YAB1           --------->MYB52(1)                           --------------->AtSPL8 ---CBF                  <<<<<<<<<<<<<<<<<LFY                            --------------->AtSPL3 ------>RAV1(1)          >>>>>>>>>>>>>>>>>LFY                            --------->MYB59 --------->MYB52(1)   acattttgatcatacatgtttgagatggaccaatggacattgatttgtttgatatgtcttcttgtagtattgagttatgtactactccacaaaccggact  2676900                                                                                ----------->HVH21                                                                               <-----------HVH21                                                                              --------->O2     ------                                                                              --------->TGA1a -------                                                                              <---------ANAC55(2)                                                                              --------->ANAC55(2)                                                                              <---------O2  ---------              ----------->GT1 <----------DOF2       <-----------GT1 <---------YAB1 <---------bZIP60(2) >LBD16--------->ANAC46 <-------TEIL             --------------->AtSPL8       =======================   taaatctatatgcaacaagtttaaaattcatactttgattttgttcatcaatatgtactatttatctagtatgtttagacatgtgacatgtcaaaaaagg  2677000                                                                                                  ---                                                                            <----------ID1      <----                                                                        ---------->DOF2   --------->ANAC55(2)  <-----------GT1                                             --------------->AGL15       <---------ANAC58 ----->GT1            --------->TOE2(3)                       <---------HSFB2a(2)         <---------ANAC55(2) -->DAG2          <----------DOF2                             --------->HSFB2a(2)         <---------ANAC55(1) ->DOF2           <---------DAG2                 <---------YAB1      <-----------HVH21    <---------ANAC46 ==bZIP_DOF ------>NtERF2             --------->ZAT6         ----------------->AG         <---------ANAC58   tatatttctgtctctgccaacttttcttaaaaaccatgtaacaccaaaaatatgtttatttcttccaaaaatgtcaaagctacaaaacaattacgttttc  2677100                        --------->ZAT18                      <---------At4g35610                      --------->ZAT2                      <---------ZAT2                    <---------ZAT18                   <---------ANAC58                   <---------ANAC58                                                            <-----             <---------YAB1                                                                   -------    <---------MYB52(1)--------->At4g35610                                                     <------ ------>ANAC46--------->TOE2(3)    --------->ATHB12      ----------->GT1                     ------->GAMYB -------GT1<-----------GT1         <---------ICU4      <---------MYB52(1)    <-----------RAV1(1)-----   acatcagtttgttttaccatagcgagctcaccagtagtcattgcaagaacaagagccgtttgtaaaacaatgaaacctattgttgtctctaacaacgatc  2677200  Previous    Next  AGI:  At3g08810.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At3g08810 [Arabidopsis Thaliana] (GB:Q9C9X9;GB:Q9SR81); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51250.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 2675637    to: 2676699    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g08820.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to vegetative storage protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABG22332.1); similar to Os11g0109600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065554.1); similar to hypothetical protein OsJ_031375 [Oryza sativa (japonica cultivar-group)] (GB:EAZ17166.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2677124    to: 2679185    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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