Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                -----                                                                                                <----                                                                                               <-----        <---------GLK1(2)                                             <-----------HVH21        ------   --------->MYB52(1)             <------ZmHOX2a(1)             ---------->DOF2          --------->YAB1  ----------->HVH21             ----------->GT1    ---------->DOF2--------->MYB52(1)  --------->TOE1(3) <---------MYB59    ---------->DOF2     <-----------HVH21----------->GT1--------->YAB1--------->TOE2(3)   aggcctaacagtttctcatttctaaagagagagagaggaaaatgtcacatacaaaaagaatgtcaaaatagcggtcataagagaaaaaccttcataaaaa  2622500                       <------------CBF                  <------MYB83                  <------MYB46(1)                 <---------DEAR3(1)                 --------->MYB55(2)                 --------->MYB111(2)                 <---------AtMYB61                 --------->MYB111(1)                 --------->MYB46(2)                 <---------MYB46(3)  --------->At4g35610<-------TEIL --------->MYB52(1)  --------->ZAT18 ---->AHL20(1)  <---------MYB55(1) ---->AHL20(2)  <--------P                   ---------->DOF2             --------->ALFIN1 -----AHL20(2) <-------GAMYB  <---------ARR14(2)   <-------TEIL  -------->ATHB1 ----AHL20(2) <---------MYB46(3)         <------------CBF       --------->ICU4 --->AHL20(2) --------->ATHB12--------->ARR14(2)  --------->CCA1(2)<---------YAB1        <---------YAB1   aattagcggtcttagatggttggtgcattgcaaatttgcaaaccattgaaagatacattctttggaattattcatgtgttgaacttgtggtattatacat  2622600                                                                                                 ----                                                                                      ------>ZmHOX2a(1)            ------------>CBF                                                         --------->TOE1(2)        <---------HSFB2a(1)                                                       <---------ARR14(2)        <---------HSFC1(2)                                  ---------->DOF2       --------->ARR14(2)        --------->HSFB2a(1)      <---------ANAC46    --------->ARR11(3)           --------->GLK1(2)        --------->HSFC1(2)    <---------MYB52(1)     <---------ARR11(3) <----------DOF2      <-------     ---------->DOF2    <------ZmHOX2a(2)        ---------->DOF2 ------------>CBF <---------ARR11(1)   atatgtagaaagcttccaatttggcgatcacagttgtgtctttcaactaaaaaaagacatttgaaagttcaatgcttttgtccgaatcctactatataaa  2622700                                                                          --------->ALFIN1                                                                         --------->TOE1(2)                                                                         ------->PIF5                                                                         <-------PIF4                                                                         ------->PIF4                                                                         <-------PIF5                     --------->ZAT2                                      ------->MYC4                     <---------ZAT2                                      <-------MYC2                     <---------At4g35610                                 ------->MYC3                     --------->At4g35610                                 <-------MYC3                   <---------WRKY38(1)                                   ------->MYC2                   <---------WRKY12                                      <-------MYC4                 <-----------HVH21                                      --------->PIF3(3)                 <---------PCF2                                         <---------PIF3(3)                <------MYB83                                            <---------TGA1a                <------MYB46(1)                                         --------->TGA1a               <---------MYB46(3)                                       --------->O2              --------->ALFIN1                                          <---------O2      --------->At4g35610              <---------ANAC46             <---------ANAC58            ------------>OsbHLH66            --------->MYB55(2)             <---------ANAC46          ---------------->PIF3(2)            <---------MYB46(3)             <---------ANAC58  <---------ZAT6    --------->At4g35610           <---------AtMYB61          <------MYB83         <---------ANAC58    <---------ZAT2 ----->AHL20(2)--------->MYB55(2)     <------MYB46(1)      <---------ANAC58    <---------At4g35610 --AHL20(2)--------->ALFIN1       --------->MYB52(2)       <---------ANAC46  <---------PCF2   aaaatcaacaatggtggtgggtcagctcaacatgcttagttggtgtcttggtgaagtagttgagtgttatgggcacgtgggagctcaaaaacagcttaag  2622800      --------->ALFIN1     <-------PIF4     <-------MYC2     <-------MYC3     ------->PIF4     ------->MYC3     ------->MYC2     --------->TOE1(2)     ------->MYC4     <-------MYC4     ------->PIF5     <-------PIF5                                                <-----------RAV1(2)    <---------PIF3(3)             <---------ANAC46             <---------ARR11(3)    --------->O2               <---------WOX13(1)              --------->ARR11(3)    --------->PIF3(3)         >>>>>>>>>ARR2                  --------->ICU4    <---------O2              <------------CBF               ----------->ARR10    --------->TGA1a          --------->ATHB12              ---------->DOF2    <---------TGA1a  <---------WOX13(1)               ---------->DOF2                     ------>MYB46(1)   <---------TOE1(2)<------------CBF----------->GT1<-----------TBP            <-----------GT1   ------------>OsbHLH66    <---------YAB1     <---------TOE2(3)<------ZmHOX2a(2)     *TSS------>MYB83   tttcgcacgtgggaaatgggccgattgattttgattgtttgtaaaaactagggttttaaagcaaagatcaggtttcgatttcaccaaaaaccaaacactg  2622900                                                                                                   <<                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC55(1)                                                                                 <---------ANAC58  <<                                                                                 <---------ANAC55(2)<                                                                                 ====================bZIP_DOF                                                                                 >>>>>>>>>>AREB2   <<                                                                                 --------->O2      <<                                                                                 <---------ANAC58  <<                                                                                 <---------O2     <--                                                                              <---------SPL7      <--                                                                 ---------->ID1  --------->TGA1a  <--                                                               <---------ANAC58  >>>>>>>>>>AREB1  <--                   ---------->DOF2                             <---------ANAC58  <---------TGA1a  <--          ---------->DOF2                          <------ZmHOX2a(2)  <---------ZAT14            ----         ------>ZmHOX2a(1)                        --------->ARR11(3)  --------->ZAT14     ---------->DOF2        --------->TOE2(3)      <---------MYB52(1) <---------ARR11(3) <-----------HVH21<---------ETT(2)   tgtcttccatcctaaagattgtaaagggaaaccgttttcgattttcagagaagatcacacatctttcgtcccttcactgccatacgtgtcgataaagatg  2623000         <------NtERF2         --------->ATERF1(1)         --------->RAP2.3(1)        <---------ATERF1(1)        ------>NtERF2        <---------ERF1        <---------RAP2.3(1)        <---------ORA47(2)       <---------DEAR3(1)       <---------RAP2.6(2)       <---------DREB2C(2)       <---------RRTF1(2)       <---------ATERF1(2)       <---------ANAC46       <---------RRTF1(3)       <---------RAP2.3(3)       --------->ATERF1(2)       <---------RAP2.3(2) <---------ARR14(2) <<<<<<<AtERF-1 ---->NtERF2 --------ERF1 --------RAP2.3(1) <<<<<<<AtERF-2 ------NtERF2 <---------HSFC1(2)                                                        --------->MYB46(3) <<<<<<<AtERF-4                                                                       --------->MYB52(1) <<<<<<<AtERF-5                                                                      --------->TOE1(2) <<<<<<<AtERF-3                                                                --------->LBD16 -------ANAC46--------->HSFC1(2)                                              --------->LBD16 -------RAP2.3(2)                                                             --------->ANAC46 -------DEAR3(1)                                                             <---------LBD16 -------RAP2.6(2)                              --------->ALFIN1         --------->AtMYB61      <----- -------RAP2.3(3)                       ---------->DOF2               ------->TEIL  --------->MYB46(3) ----->RAP2.6(3)               <---------GLK1(1)                      -------->P   <------ZmHOX2a(2)   gcggctatggcggcgaagcttcagttatcggcgaaatctgatcaaagcagtgtgcgattaccgagagtgatcaacctctcccgcgatccaacgactagag  2623100                                                                                      <---------MYB46(3)                                                                                     <---------DEAR3(1)                                                                                   <---------MYB46(3)                                                                                  <---------AtMYB61                                                                                  <---------DEAR3(1)                                                                                <---------MYB46(3)                                                                               --------->ALFIN1                                                                             <---------ZAT2                                                                            <---------AtMYB61                                                                            --------->ALFIN1                                                                           <------NtERF2                                                                          --------->LBD16                                                                         <---------ANAC46    <-------                                                                         --------->DEAR3(1)  --------                                                                        --------->ATERF1(1)  <-------        --------->ANAC46                                                <---------LBD16     ---------       --------->LBD16                                                  <------NtERF2--------->ALFIN1       <---------HSFB2a(2)      <---------ALFIN1                       ------>NtERF2 <---------AtMYB61       --------->HSFB2a(2)      --------->AtMYB61              <---------ARR14(2) --------->ALFIN1 <-     <---------LBD16         --------->ANAC46               --------->ANAC46<---------DEAR3(1) ------   --------->ARR14(2)  <---------MYB46(3)                  --------->HSFB2a(2) <---------DEAR3(1) ---   <---------ARR14(2)<---------MYB52(1)                    <---------HSFB2a(2) <---------AtMYB61  --- ----GLK1(2)     <------ZmHOX2a(2)--------->ANAC46 <---------ALFIN1    <---------RAP2.3(1)  ---------   tctcgtttccgcgaaatggatcagtttgttccctccacaccaatttctcttctccacatctcgcgaaaccttgcgccggaggtggtggtggtggaagcac  2623200            <---------ANAC46           --------->ATERF1(1)           <---------LBD16           --------->At4g35610           --------->RAP2.3(1)          <---------RRTF1(1)          <---------RAP2.3(1)          <---------ERF1          <---------ATERF1(1)          <---------ORA47(2)          ------>NtERF2          <---------RAP2.6(1)         <---------ATERF1(2)         <---------RRTF1(2)         <---------DREB2C(2)         <---------RRTF1(3)         <---------RAP2.3(3)         --------->DEAR3(1)         <---------DEAR3(1)         <---------RAP2.6(2)       ------->GAMYB       <---------RAP2.3(1)              <---------MYB46(3)     <---------At5g28300               <---------AtMYB61    <---------ICU4                   <---------MYB46(3)    --------->MYB52(1) <---------At4g35610   --------->ICU4      --------->At4g35610 --ABI4(2)<---------DEAR4(2)        <---------AtMYB61 ->MYB46(3)<---------At4g35610   --------->ALFIN1 --HSFC1(2)<------NtERF2        <------ZmHOX2a(1) >ANAC58 <---------RAP2.3(2)  --------->ALFIN1 --------MYB52(1)--------->At4g35610--------->ALFIN1           --------->ANAC58 --->MYB52(1)    <---------At4g35610<---------DEAR3(1)         --------->ANAC58 -------->GT1 --------->ATERF1(1)<---------AtMYB61          --------->ALFIN1             <---------PCF5 ------>LBD16 <------NtERF2  <------ZmHOX2a(1)       <-----------RAV1(2)       --------->At4g35610 <- >ANAC58<---------ABI4(1)  --------->ALFIN1         <-------TEIL             --------->YAB1       ---   cggtaataacggcggcggaagcggaagcggaggaggaggtggtggttttggaggttcagggggtgaagcaagtgaagaatcatctccatggggaccaata  2623300                                                 <---------------AGL15                                                 --------------->AGL15                                                <-----------------AGL3                                                --------------->AGL15                                                ----------------->AG                                                <-----------------AG                                                <-----------------AGL1                                                ----------------->AGL3                                              <---------ZAT18                                            <---------At4g35610                                            --------->At4g35610                                         ------>ZmHOX2a(1)                                     --------->ARR14(2)                                     <---------ARR14(2)                            ==================                                 <---------ZAT2 <-----------------AGL2         <------ZmHOX2a(1)                                 --------->ZAT2 ----------------->AGL1       <---------TOE1(2)                                 --------->At4g35610                      ------>ZmHOX2a(2)                                 <---------At4g35610   <---------TOE1(3) <------ZmHOX2a(2)                                 ----------->RAV1(2)   <---------TOE2(3) =============HOX2a_HOX2a                     ===========================HOX2a_HOX2a             --------->ARR11(3)                     <------ZmHOX2a(2)  --------->TOE2(3)     --------->MYB52(1)   ---------->CDC5 --------------------WRI1      <-----------RAV1(2)<----------DOF2       <---------ARR11(3)          < -------->GT1       --------->ARR11(3) ------>ZmHOX2a(2)     --------->ICU4--------->TOE1(2)     <---   gggttattcatccaaggatggagatcaagagttgcagctgatcctcagttcccttttaaggtactaatggaagagatcgtaggacttagcgcttgtgttc  2623400  Previous    Next  AGI:  At3g08636.1    Description:  unknown protein Range:  from: 2622672    to: 2622851    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g08640.1    Description:  alphavirus core protein family. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08630.1); similar to unknown [Populus trichocarpa] (GB:ABK93697.1) Range:  from: 2622886    to: 2624314    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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