Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  ------>ZmHOX2a(1)                              ------>ZmHOX2a(2)                                <---------ANAC58                             <------ZmHOX2a(2)                                 <-------GAMYB                            --------->ARR11(3)                                 <---------ANAC58                            <---------ARR14(2)                                <------MYB83                            <---------ARR11(3)                                --------->MYB55(2)                            --------->ARR14(2)                                <------MYB46(1)                    <---------ANAC58                                          --------->MYB52(2)                    <---------ANAC58                                          <---------MYB46(3)                  <---------ARR11(3)    <---------ICU4                       <---------AtMYB61                  --------->ARR11(3)   --------->ICU4                     --------->ALFIN1 ---->ANAC58<----------DOF2--------->GLK1(1)    <-------TEIL<-----------GT1 <--------P              < ---->ANAC58<-------GAMYB  <---------GLK1(1) <---------ANAC46        --------->MYB52(1) <---------At4g35610   gcccaaaaacagggcgttaagagcttgagagatcctagataaaaattatgtgcatatgtgtataactggcctaatggtgttggttgagtctgctcttggt  2620400                                                                       --------->LBD16                                                                      <---------LBD16               -                                                                     <---------LBD16               --                              <---------ANAC58                       -------->ZAP1                 <-                    --------->ANAC46   ---------->DOF2             <---------WRKY18(1)             --           ----------->RAV1(2)<---------ANAC46                    ----------->HVH21               ---       -------->P------>ZmHOX2a(2)    --------->ANAC46            --------->WRKY12             ------   <---------At4g35610        <---------ANAC58                    --------->WRKY38(1)      ------->GAMYB   --------->At4g35610      <---------YAB1                    ------>ZmHOX2a(1)           --------->MYB46(3) ---------At4g35610 <---------ALFIN1--------->ANAC46      --------->ARR14(2)            <-----------GT1   tcttctgcttaccctctgatccacacactgatgcttatacacaaagcaccaagagaacagtttcctccttgaccggggtttgatgcattgtaaccatcaa  2620500                                                                       <---------ANAC55(1)                                                                       <---------ANAC46                                                                      <-------TEIL                                                                ------>ZmHOX2a(2)                                                               --------->CCA1(2)                                                               <------ZmHOX2a(2)                                                              <---------ARR14(2)                                                              --------->AGP1------->TEIL -------->CCA1(2)                                             --------->ARR14(2) ------->AHL20(1)                                             <---------ARR11(3) --------ARR11(3)                                             --------->ARR11(3)                ----- ------->ARR11(3)                                            <---------GLK1(1)                  <---- ------>YAB1              --------->ALFIN1                   --------->GLK1(1)                  <---- ---->DOF2        <---------AHL20(2)              <----------DOF2 ----------->GT1            <-------   agatattagataatttggatttattcatgtgttgaagtagttgtattcttgactttggaatggagatctagttacatgtatatgtggatagatagatacc  2620600                                                                                   <---------MYB46(3)                                                                                   <------MYB83                                                                                   <------MYB46(1)                                                                                  <---------DEAR3(1)                                                                                  <---------AtMYB61                                                                                  --------->MYB46(2)                                                                                  --------->MYB111(2)                                                                                  --------->MYB55(2)                                                                                  --------->MYB111(1)                                                                                  <---------MYB46(3)                                                                                 ====================                                                                                 <---------MYB55(1)                                           <----------DOF2                       <--------P                                    <----------DOF2                             =====================                            <---------ANAC58                                    <-------GAMYB   >>>>>                            <---------ANAC58                       ------->TEIL<---------MYB46(3)       <---------ANAC46  <----------DOF2 --------->LBD16           --------->ARR14(2)         ------- ---->TOE2(3)        <---------ANAC58  <---------LBD16   <---------ANAC46      --------->MYB55(2) -----MYB59          <---------ANAC58  <-----------------AGL2   <---------YAB1 --------->MYB111(2)  < -----DAG2     --------->ARR11(3)<-----------GT1         <---------ANAC58     --------->ALFIN1------- ----GT1     <---------YAB1 <---------ANAC46             <---------ANAC58 <-----------RAV1(2) -------   ttaccaatggagtttatgattttgcttctttcttgtaactttccggttttaggcaaattgtgtgttatgaatcggccaaggtggttggtgaagtagttga  2620700         ------->PIF5         <-------MYC3         ------->MYC3         <-------MYC2         ------->MYC2         <-------MYC4         <-------PIF5         ------->MYC4        <---------ANAC55(2)        <---------TGA1a        ==============================bZIP_DOF        <<<<<<<<<<HY5        --------->TGA1a        --------->O2        <---------O2   <---------bZIP60(1)                                                         <---------ANAC46   --------->bZIP60(1)                              --------->TCP15(1)         <---------ANAC58 --------->YAB1                         ----------->RAV1(2)                    <---------ANAC55(2) =================MYC_MYB               <---------At4g35610    --------->AHL20(2) =================MYC_MYB               --------->At4g35610   <---------YAB1   --------->ANAC55(2) >>>>WRKY6                              <---------ZAT2    <---------WOX13(1)   <---------ANAC58 -->WRKY45                              --------->ZAT2   <------------CBF --------->MYB52(2)       -- ---------YAB1                    <-----------HVH21 --------->TCP20 <------------CBF            ----- -->WRKY38(1)<---------PCF2   <---------TOE2(3)     --------->PCF5 <---------AHL20(2)          ------ -->WRKY12--------->ALFIN1 <----------DOF2          <---------PCF2<---------AHL20(2)    >>>>>>>>>MYB2   ctatgatgacacgtggggctcagacacagctttaggtttcacagctgggaaatgggcccgattgattatttattgtttgtttcgtaagaaaaccaaaaaa  2620800                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                           <---------GLK1(1)                                                                                           --------->GLK1(1)                                                                                     ------>ZmHOX2a(2)                                                                                    <---------GLK1(1)                                                                                    <------ZmHOX2a(2)                                                                                    --------->GLK1(1)                                                                                   --------->ARR11(3)                                                                                   <---------ARR11(3)                                                                                   --------->ARR14(2)                                    <---------ALFIN1                               <---------ARR14(2)       <---------TOE2(3)           --------->MYB46(3)                              --------->AGP1----       <---------TOE1(3)    <----------DOF2                                        <---------AGP1<---      ---------->DOF2       <---------DAG2           <---------WOX13(1)           <---------CCA1(2)--   <-----------TBP  --------->ARR14(2)             --------->ATHB12         <---------ARR11(3)   <--- --------->GT1      <---------ARR14(2)*TSS    ------>ZmHOX2a(1)             --------->ARR11(3)   ---- ---->DAG2     <---------TOE1(1)  >>>>>>>>>>>>>>>>>LFY                     --------->CCA1(1)    <---- ---->DOF2     <---------TOE2(1) <-----------GT1  <---------YAB1           --------->RVE1(1)    <----   agggtttttaaagttggacgaggttcccaactttttcaccactggctcctctgtgattgattccattcccgtctaaaatatctcagatctcagatttcag  2620900                                                            --------->RAP2.3(1)                                                            <------NtERF2                                                            --------->ATERF1(1)                                                           <---------RAP2.3(1)                                                           ------>NtERF2                                                           <---------ERF1                                                           <---------ATERF1(1)                                                           <---------ORA47(2)                                                          <---------ATERF1(2)                                                          <---------RAP2.6(2)                                                          <---------RAP2.3(2)                                                          <---------DEAR3(1)                                                          --------->ATERF1(2)                                                          <---------ANAC46                                                  <---------RAP2.3(1)                                                  <---------ERF1                                                  <<<<<<<<<AtERF-5                                                  <<<<<<<<<AtERF-4                                                  <<<<<<<<<AtERF-3                                                  <<<<<<<<<AtERF-1                                                  <<<<<<<<<AtERF-2                                                 <---------ANAC46 -------GLK1(1)                                  <---------DEAR3(1) ------>GLK1(1)                      --------->ZAT18      <---------RAP2.3(3) ----ZmHOX2a(2)                      --------->ZAT14      <---------RRTF1(2) ----->ARR11(3)                      <---------ZAT14      <---------RRTF1(3) ------ARR11(3)                      <---------ZAT18<---------ARR14(2) ----->ARR14(2)                      <---------SPL7<------NtERF2 --------->HSFC1(2) ------ARR14(2)                     <---------ZAT6------>NtERF2  <---------HSFC1(2) ---->ZmHOX2a(2)               --------->YAB1    <---------RAP2.6(2)                     <------ZmHOX2a(2) ------AGP1                   <------ZmHOX2a(2)  <---------RAP2.3(3)                    <-----------HVH21 ----->AGP1 <----------DOF2  --------->ARR11(3)  <---------RAP2.3(2)                    <---------ARR14(2) -----At4g35610              <---------ARR11(3) --------->RAP2.6(3) <-------TEIL        --------->ARR14(2) -----CCA1(2)        --------->YAB1<---------------AtSPL8 <---------DREB2C(2)  --------->ANAC46   atctctcagttcaactttctcattcatcacagatcatagtgtacgaagatggcggctatggcggcgaagcttcatatatcgacgaaatcggatcagagca  2621000                                        ------->GAMYB                                       --------->MYB46(3)                                      ------>MYB46(1)                                      ------>MYB83                             <---------ANAC55(2)                             <---------O2                             --------->O2                             <---------ANAC46                             --------->ANAC55(2)                             <---------ANAC58                       <------ZmHOX2a(2)                             <---------ANAC58                      <---------ARR14(2)                           <---------ANAC46                        --------->ARR14(2)                         <-----------HVH21                    --------->MYB52(1)          ------>MYB46(1)                      ----------->RAV1(2)                  --------->ANAC46          --------->ANAC46                     ------->TEIL     -------->P           --------->ANAC58        <---------ALFIN1                     -------->P    ------>ZmHOX2a(2)       --------->ANAC58     --------->ANAC46        <---------ANAC46<-----------RAV1(1)               --------->LBD16<-----------ARR10------>MYB83   atgtgcgattgcctagactgatcaacctgtcgcgtgatccaaccgctagagtcttgtttccacgaaacggatcagtttcttcgctccacaccaacttctc  2621100                                     <---------MYB46(3)                                    <---------DEAR3(1)                                    --------->ALFIN1                                  <---------MYB46(3)                                 --------->ALFIN1                               <---------MYB46(3)                                           <-------GAMYB                              <---------DEAR3(1)                                           <---------MYB46(3)                              --------->ALFIN1                                            <---------ANAC46                              <---------AtMYB61                                           <---------AtMYB61                            <---------ZAT2                   <---------MYB46(3)         <---------MYB46(3)                        <---------ANAC46                     <---------DEAR3(2)        <---------AtMYB61                        --------->DEAR3(1)                  <---------DEAR3(1)         --------->ALFIN1                       <------NtERF2<---------AtMYB61       <---------DREB2C(2)        <---------DEAR3(1)                       <---------LBD16                   --------->ANAC46           <---------AtMYB61                 <---------ANAC58<---------AtMYB61      <---------LBD16   --------->At4g35610                 <---------ANAC58<---------DEAR3(1)     <---------At5g28300         --------->ALFIN1        <---------AHL20(2) <---------AtMYB61<---------HSFC1(2)<------NtERF2         <---------DEAR3(1)        <---------YAB1 --------->ATERF1(1)  --------->HSFC1(2)<-------GAMYB      --------->ALFIN1       <---------AHL20(1)  --------->ALFIN1 <---------HSFB2a(1)           <---------At4g35610       --------->AHL20(2)  <---------DEAR3(1)          <---------ICU4--------->ALFIN1<---------MYB46(3)       --------->AHL20(1) <------NtERF2     --------->HSFB2a(1)--------->ALFIN1  <---------AtMYB61       <---------AHL20(2)--------->LBD16   --------->ANAC58 --------->ALFIN1    <------ZmHOX2a(1)      --------->YAB1  <---------RAP2.3(1)  --------->ANAC58<---------ABI4(1)  --------->ALFIN1   ttctccaaatataatggttccatgcgccggaggtggtggtggtggaagcatcggtaatcacggcggtggaagtggaagcggaggaggtggtggtggttat  2621200                                                                           <---------ZAT2                                                                           --------->At4g35610                                                                           --------->ZAT2             >>>>>>>>>TBF1                                                 <---------At4g35610          >>>>>>>>>TBF1                 ----------->GT1                  <-----------RAV1(2)      --------->At4g35610              <---------TOE1(3)       <------ZmHOX2a(2)            <--------      <---------At4g35610              <---------TOE2(3)      --------->ARR11(3)           <---------    <-----------RAV1(2)        <---------PCF5                 <---------ARR11(3)          -----------   <-------TEIL  --------->GLK1(2)  <---------MYB52(1)       <---------GLK1(1) <---------GLK1(2) <---   ggaggttcagaagaagaagaatcgtctccatggggaccattagggttatttatccaaggatggagatcacgagttgcagctgattctcaattccctttca  2621300  Previous    Next  AGI:  At3g08620.1    Description:  KH domain-containing protein. similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G38610.2); similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G38610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45373.1); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 2617774    to: 2620579    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g08630.1    Description:  similar to alphavirus core protein family [Arabidopsis thaliana] (TAIR:AT3G08640.1); similar to unknown [Populus trichocarpa] (GB:ABK93697.1) Range:  from: 2620838    to: 2622226    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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