Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <---------ANAC58                                     <---------ANAC58                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------ARR11(3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       --------->AHL20(2)          <-----------GT1   <---------AHL20(2) ----->ANAC58                      <---------AHL20(2)--------->AHL20(2) ------->GT1                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->bZIP60(2)              --------->ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <x ------TGA1a                  <---------AHL20(1)--------->ANAC58                                  <xx ----->TGA1a--------->RVE1(1) --------->AHL20(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         -------- ------O2  --------->ARR11(3) <---------ARR11(3)--------->ANAC58   ----------->GT1          --------- ----->ANAC58              --------->YAB1  ----------->HVH21      ----------->GT1          ---------- ----->ANAC46            <---------TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------YAB1 ----->O2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------------AtSPL3 ----->ANAC55(1)        --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------------AtSPL8 ----->ANAC55(2)      <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          --------------->AtSPL8 ------ANAC55(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <--   cgttacaaattaaaatctctgtttattaatgatatattttcttgtttgacacgatttatatatatcagacgttaaaacttatatttagtacgataaagta  2617400                 <---------RAP2.6(2)                --------->RAP2.6(3)                <---------At5g28300               --------->MYB52(1)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ARR14(2)                                                   <---------RVE1(1)             <---------HSFC1(2)                                                   <---------ARR11(3)          <---------MYB52(1)                                                      --------->ARR11(3)    --------->ZAT14                       <---------REM1(1)                <---------TOE1(3)    <---------ZAT14          --------->ANAC58                              <---------TOE2(3)  --------->At5g28300        ----------->GT1                          <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->DAG2                  --------->ARR11(3)          ------ xxxxxxxxxxxxxxsmallRNA(s)   <----------ID1                        <---------GLK1(2)          <------ --->GT1 --------->LBD16     --------->ANAC46                      <---------ARR11(3)<---------AHL20(2) >DAG2 <---------LBD16       --------->ANAC58                  ---------->DOF2    <---------GLK1(2) >DOF2------->TEIL       ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ----------->ARR10---- -------ALFIN1<---------ARR14(2)  ---------->DOF2    --------->MYB52(2)  ---------->DOF2     --------   acaccgtgaaccggaagttacggccataaaaacgcaaaaaggaaatgtagggttttagttgctaaaaaagatacttaaaggttagattttttttttaaag  2617500   ---------->DOF2  <---------AHL20(2) --------->AHL20(2)                                                                  --------->YAB1 <---------AHL20(2)                                                                 <---------YAB1 ----->GT1       ----------->GT1                                       --------->DOF5.7(2) ---------- ---TOE2(3)     --------->DAG2           <---------At5g28300          <----------DOF2--------->ATHB12 ----->AHL20(2) <---------TOE2(3)    <---------ICU4             ---------->DOF2 --------->AHL20(2) -->DOF2 ----------->GT1 --------->YAB1 <-----------GT1     --------->ZAT6   ----------->GT1   taattaaaagggagtaaaaaggttaaatgataagtctcatatttaccctagcattctactaaacactaaagactttaactgataaaatgatagcaaagaa  2617600                      ---------->DOF2                                                   ----------->GT1                --------->YAB1                                                   <---------------AGL15               --------->ICU4                                                    --------------->AGL15               <---------ATHB12                           --------->LBD16  ----------->ARR10             --------->WOX13(1)                       --------->ARR14(2) <--------P<----------DOF2          --------->YAB1 --------->YAB1  <---------ARR11(3)              <---------MYB52(1)   <-------GAMYB<---------ICU4           --------->ARR11(3)            <---------HSFB2a(2)  ----------->GT1 <---------YAB1     ---------->DOF2  <---------ARR14(2)<---------MYB52(1)          - >DOF2  <---------WOX13(1) --------->CCA1(2)          --------->GLK1(2)--------->HSFB2a(2)         --   catagggttgaatgacaatcatggtaaagataagaattcaaaagatgttttgacaaaatccgaatatagtcttcggtaagtttctcttttttgttaaaaa  2617700                              ------>ZmHOX2a(1) --------->ANAC46         <----------DOF2   <-----------GT1      --------->ANAC58                                 <---        <------------------------ANAC81         --------->ANAC58                                 <--- -------->DAG2            <-----------GT1 <---------AHL20(2)                                 <------- -------->DOF2      <----------DOF2     <-----------TBP<-----------GT1    *TSS    ----------->HVH21   aaaaagtttctcttttcattttcttttttttcctgttctcttatttatacacacaaaaaaccctccttgagtcgaaatgctactgtgacgactctgtttg  2617800                                                               --------->RVE1(1)                                                              --------->ARR11(3)                              ------->GAMYB                   --------->GLK1(2)                             <---------ALFIN1           ------>NtERF2                          --------->MYB46(3)            --------->LBD16                            <-                       --------->REM1(1)              --------->MYB46(3)     <---------DAG2        --                     ----------->RAV1(1)            <---------ARR14(2)       <----------DOF2       --       <----------DOF2 --------->MYB46(3)           --------->ARR14(2)      <------------------------ANAC81 ------ANAC58      <------NtERF2            <---------ALFIN1  <---------ARR11(3)                   <- ------ANAC58   <---------LBD16            ------>ZmHOX2a(1) <---------GLK1(2)              <-------- --MYB52(1)     ------>ZmHOX2a(1)     ------>ZmHOX2a(1)--------->ANAC46<<<<<<<<<TBF1    <-----------GT1   cttctcttccttttcttcctcggcaacaacaacacccttcctctcctcactccctatccgccaaaatctcttcttcttcctttttcttattttcctttca  2617900                                                   <-----------GT1                                                --------->YAB1                                               <---------YAB1                                              --------->AHL20(1)                                              --------->AHL20(2)                                              <---------AHL20(2)                                             --------->YAB1                        ------>MYB46(1)      <---------ICU4       --------->At4g35610                  --------->ICU4 --------ARR11(3)       ------>MYB83        <---------YAB1                      ------>ZmHOX2a(1) ------->ARR14(2)      --------->ANAC46   --------->YAB1         <---------HSFB2a(2) ------->ARR11(3)     --------->MYB46(3) <---------YAB1          --------->HSFB2a(2) --------ARR14(2)    --------->DEAR3(2)  <---------AHL20(2)      --------->HSFC1(1) --DOF2<---------At4g35610           ----------->GT1      <-----------GT1 <----------DOF2          --   atatctgatagctgcaaaacagaacccaccatgtctggtctgtataattataataacttctcaccttctagagccgcttctcctcagattagaacccctt  2618000                                                                                               ------                                                             <---------GLK1(1)                 <-----              --------->ALFIN1                    <----------DOF2                    <---------ANAC58          <-----------RAV1(2)                    <---------ANAC58         <----------DOF2      <-----       --------->ETT(2)            ------>ZmHOX2a(1) <----------DOF2  <---------CCA1(2)        ------ ---->ZmHOX2a(1)      <----------DOF2            <---------ANAC58   <---------CCA1(2)<---------ANAC58   cctccgatgttgacaggtgtttctctttcgacttatcctccctctctaatggcttctttgatgaaatctcttatctctttgttttttgctcgttttctgc  2618100        <-----------ARR10        <---------ARR11(3)        --------->ARR11(3)       <---------CCA1(2)     --------->ANAC55(2)                                                 ------>NtERF2     <---------ANAC55(2)                              <-----------ARR10 --------->DEAR3(1) --->At4g35610                  ---------->DOF2  --------->AtLEC2       <---------ZAT18       <------ ----At4g35610       --------->At4g35610         --------->ANAC58      --------->DEAR3(2)   <-------- ----ZAT14           <---------At4g35610         --------->ANAC58     <---------At4g35610--------->PCF2 --->ZAT14      <---------MYB46(3)          <----------DOF2           --------->At4g35610<---------TCP15(1)   agtcaatacatatctcagttgttagcagagcatcaaaagcttggacctttcatgcaagtcttacccatttgtagccgactcttaaatcaaggtcccactc  2618200                           <---------AHL20(2)                   --------->CCA1(2)                   <------ZmHOX2a(2)                  --------->ARR11(3)                  --------->AGP1                  <---------ARR11(3)                                                             ----                  <---------ARR14(2)                            --------->ICU4               <-------                  <---------AGP1                     <---------CCA1(2)                       <-------   <---------CCA1(2)------>ZmHOX2a(2)              ------>ZmHOX2a(1)                         <------- ---ALFIN1        --------->ARR14(2)             <---------ANAC46                       --------->YAB1 -ALFIN1         <---------CCA1(2)         <---------TOE2(3)    <---------YAB1       <----------DOF2-   ttctcatttcttccttcttagatctgaattttttttggtgaagttgatgtttcctgtatatttgtcttgattatgcagcatttctctctttgatgacttg  2618300  Previous    Next  AGI:  At3g08620.1    Description:  KH domain-containing protein. similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G38610.2); similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G38610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45373.1); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 2617774    to: 2620579    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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