Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                                             --------                                                                                           ==========                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                                                          ===========                                                                                         <---------ARR14(3)                                                                                         <---------ARR11(3)                                                                                         --------->ARR14(3)                      =====================HOX2a_HOX2a                                   --------->ARR11(3)                      ------>ZmHOX2a(2)                                                  --------->ARR14(2)                     ======================HOX2a_HOX2a                                   <---------ARR14(2)                     <------ZmHOX2a(2)                                                  <---------GLK1(1)                    <---------ARR14(2)                                                  --------->GLK1(1)                    --------->ARR11(3)                                               --------->LBD16  --------->TOE2(3) <---------ARR11(3)         <-----------GT1                      --------->ANAC46 ---->YAB1          --------->ARR14(2)       <---------KAN4(2)                     <---------LBD16 ---->AHL20(2)     <------ZmHOX2a(1)  <---------ALFIN1            <---------YAB1  <---------ALFIN1 ----ATHB12    --------->At4g35610  ------>ZmHOX2a(1)<----------DOF2             <---------REM1(2)   aaaacattagaagaaacagcaggatccttgagaaactcctccactcgaataacctctttcaaaaacttatgtttcgcattggctccacggagatcccgag  2561400                    <---------ARR14(2)                    --------->ARR14(2)                    --------->GLK1(2)                                            ---------->DOF2                   --------->GLK1(1)                                           --------->DOF5.7(2)  <---------------AGL15                                                      ----------->GT1  --------------->AGL15--------->TOE1(2)                          <---------YAB1 <---------DOF5.7(2) -->LBD16          <---------GLK1(1) ---------->DOF2             <---------ARR11(3) ->LBD16<------ZmHOX2a(1)        ----------->RAV1(1)             --------->ARR11(3) ==============HOX2a_HOX2a      --------->REM1(1)              ----------->GT1--------->TOE2(3) ==============HOX2a_HOX2a ------>NtERF2          --------->AHL20(2)     <---------ZAT14   aaaaccctaaggagcaatggcaaatccgacgactacaacaaaagagagtcgattaaacagagaagaagataatagtgaagcgttaaaggaatagatagat  2561500                                                       ----------->RAV1(1)                                                   --------->ANAC58                          ----------->HVH21        --------->ANAC46                        --------->ANAC55(2)        --------->ANAC58                        <---------ANAC55(2)      <---------ALFIN1                        <---------ANAC46        ------>ZmHOX2a(1)                        <---------O2        --------->ARR11(3)                      ----------->GT1                        --------->O2        <-----------GT1                        --------->ANAC58                       <-------TEIL         --------->ARR14(2)                     ------------------                   --------->ANAC46         <---------ARR14(2)        ------>ZmHOX2a(1)                   --------->ANAC58       --------->ARR14(2)      <-----------GT1  --------->ANAC58                   --------->ANAC58      <---------CCA1(2)      <---------ICU4   --------->MYB52(1)         <---------AHL20(2) ---------->DOF2<---------CCA1(2) --------->YAB1  ------>NtERF2         --   agagataccatgtaattggacaagctacgtgaaaggccatcccatatatcctcaccccaacaaaaattattcctctcgcctccaaacggaaaaaaaaaaa  2561600                                                                      <---------TOE2(3)                                                                <---------AHL20(2)                                                                --------->YAB1                                                                --------->AHL20(2)                                                             --------->YAB1                                                            <---------YAB1 ------>ZmHOX2a(2)                                                            <---------AHL20(2)          <-----------GT1            <---------YAB1                                 --------->AHL20(1)     --------->YAB1         --------->GLK1(2)                                 <---------AHL20(2)     --------->TOE2(3)        <---------ARR11(3)                                 --------->AHL20(2)    ----------->GT1        --------->ARR11(3)            <----------DOF2      <---------AHL20(1)    <---------ZAT6        <---------GLK1(2)       <----------DOF2           --------->YAB1 --------->ARR14(2)        <- ------>ANAC81            ------>ZmHOX2a(2)            <---------AHL20(2)<---------ARR14(2)       <-- ------->AHL20(2)        <------ZmHOX2a(2)            --------->AHL20(2)<------ZmHOX2a(1) --------->ZAT6   aaaaaatcgagattttgatttttagagatcgcttctttctcttttttttttttatatttaatataataatataaggatcggtaatgttaataactctatt  2561700           --------->WOX13(1)          --------->AHL20(2)          <---------AHL20(2)          ---------->DOF2                                             <--      --------->AHL20(2)       ----------->GT1              --------->At4g35610                  <---    <---------TOE2(3)          <---------ANAC46             <---------At4g35610                  <---  --------->ICU4             --------->ZAT14                <---------ZAT2                      <---- <---------YAB1         <----------DOF2--------->DAG2     <---------ZAT18                   --------- --------ZAT6           --------------->AGL15      <----------DOF2                      <XXXXXXXXXXXX -------YAB1  <---------ICU4 <---------ZAT14   <---------CCA1(2)         <---------AtMYB61--------->CCA1(2)   agtattaatgaattaatcagtagtttctttgtgtagtagaaaaagggtcgtctcttttggtgagctctgtgagttttggtttggacgcagagataaggtg  2561800                                                                                                 <---                                                                                                -----                                                                                        <-----------TGA1                                                                                        <-----------HVH21                                                                                       --------->ANAC58                                                                                       --------->ANAC55(1)                                                                                       --------->ANAC46                                                                                       --------->ANAC58                                                                                       --------->bZIP60(2)                                                                                       <---------O2                                                                                       <---------TGA1a                                                                <---------ANAC46       --------->O2                                                                <---------ANAC58     <---------ALFIN1                                                                <---------ANAC58<---------HSFC1(2)      --------->At4g35610                                  <-----------RAV1(1)  --------->HSFC1(2) <- --------DOF2                                            <---------ANAC46    ====================bZIP_DOF ------ANAC58                                            <---------ANAC58    ---------->DOF2--------- ------ANAC58--------->TOE2(3)                  --------->MYB52(1)    ------------>CBF --------->TGA1a ---TEIL*TSS --------->TOE1(3)             ---------->DOF2 --------->ALFIN1--------->YAB1   --------- >DAG2<---------At4g35610            <-------TEIL        <---------ANAC58 <---------ATHB12  <-------- XXXXXXXXMIR852     --------->MYB52(1)  ------>NtERF2  --------->ALFIN1 --------->WOX13(1)  ---------   cttttctcatctcaaccttaatcaacgatgtttttaagatgcagccaaagaaaccgagtgcgtgttgcttcttccaatcaaaagcttccacgtcacatca  2561900 ------YAB1                                                                                      ---- ------->CBF                                                                         ------>MYB46(1) -----------CBF                             <---------MYB46(3)                       ------>MYB83<--- >O2                                        <-----------RAV1(1)                    <---------MYB59 >bZIP60(1)                               --------->At4g35610                   <-----------GT1------ -bZIP60(1)   --------->ZAT14             <---------At4g35610         --------->TOE2(3)    --------->YAB1 >bZIP60(2)   <---------ZAT14             <---------ZAT2<-----------GT1------>ZmHOX2a(1)--------->YAB1   caattgtgttcttcactatacaatattggaatttttggatagacagctgttgcatttttaacccaaaactttcctaagtattttaccaaataatcatata  2562000                                                      <---------ANAC58             --------->ARR11(3)                       <---------ANAC58             --------->GLK1(2)                <---------ARR11(3)       ----------->GT1                --------->GLK1(1)                                            <- ----->AHL20(2)            --------->YAB1     --------->GLK1(2)                                 ----- ------AHL20(2)            --------->AHL20(2) --------->ARR11(3)   <---------YAB1       <---------MYB46(3) --->AHL20(2)<---------ARR11(3)       <---------GLK1(1)  ----------->GT1                ----------->GT1   tatatagaagagaaaaatctgtagagcaataaaaacttagaaatccaaaatctttgacttggtaaatttgttattgtctaaaaacaccgatggtgacatt  2562100                                                             --------->AHL20(1)                                                             --------->AHL20(2)             --------->ANAC55(2)                   --------->MYB52(1)                    ------>ZmHOX2a(2)             --------->ANAC58                      ----------->RAV1(1)                 --------->ARR11(3)             --------->ANAC46                     --------->ANAC46                     <---------ARR11(3)             --------->ANAC58                  <---------ZAT14                      <---------TOE2(3)     --------->AHL20(1)                        --------->ZAT18              <<<<<<<<<GATA-1   <------     <---------AHL20(1)               <---------ANAC58       <---------AHL20(2)   <---------AHL20(2)     <---------ARR11(3)<---------bZIP60(1)     --------->ZAT14             <-----------GT1   -------- ----------GT1         --------->bZIP60(1)     <---------ZAT18<---------AHL20(2) --------->AHL20(2) ------>GT1<-----------GT1            <---------ANAC58------->GAMYB      <---------AHL20(2)  <-------   gtaacaatattttttacgaaatatgccatcacacagttttgcttatttgtgcacaacagaaaatttaatatgcaatttatctatttaatgatctaatgac  2562200                                     --------->LBD16                         --------->ZAT6                                     --------->ANAC46                   --------->YAB1     --------->ARR11(3)             --------->LBD16                  --------->TOE2(3)     <---------ARR11(3)             <---------HSFB2a(2)              --------->YAB1   <---------ATHB12       --------->TOE2(3)--------->TOE2(3)        <---------YAB1      ---------->DOF2 ---ICU4          <-----------GT1   --------->HSFB2a(2)         <---------DAG2    ------>MYB46(1) ->ICU4------>ZmHOX2a(2) --------->YAB1    --------->TOE1(3)    <----------DOF2   ------>MYB83 --ATHB12     <---------AHL20(2)   <---------LBD16             --------->TOE2(3)--------->AtMYB61   tacaaatgatcttgatttttttgccaaacataaatctccccgaaacgttagagtagccaagtcttcctttacgataataacaccaaatctaaaagaagac  2562300  Previous    Next  AGI:  At3g08020.1    Description:  protein binding / zinc ion binding. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G52100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40817.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 2557443    to: 2561808    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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