Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <------NtERF2                                                                         ------>NtERF2                                                                       --------->LBD16         ------                                                           <---------CCA1(2)                  -------                    <---------ICU4                       --------->YAB1------>NtERF2        ---------                 --------->YAB1                ----------->GT1        <---------ALFIN1      ---------         <-----------GT1                    <---------ANAC58         ---------->CDC5       --------->ANAC46         ------->TEIL                       <---------ANAC58<---------ARR14(2)           --------->ANAC46     --------------->AtSPL8       --------->YAB1        <---------ATHB12--------->ANAC46 --------->ANAC58 -YAB1--------->ANAC55(2)  <----------DOF2  <---------ANAC46--------->ARR14(2)           --------->ANAC58   gtttttatatgtaacttattgatcattttctttgtagcataagtttgagtggaaacaaatcatatccagcctccgcgcccaaaaacatatcacacaacag  2552100                                              ------------------------>ANAC81      --------->ANAC46                     xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   ------ --------->MYB46(3)                 ----------->GT1                                            <----- ->GAMYB  --------->At4g35610      <---------YAB1                                      <---------AHL20(2) -->MYB46(3)                     --------->YAB1                         --------->ARR11(3)  <-------- -->RAV1(1)     <-----------GT1  <---------ICU4          --------->AHL20(2)           <---------AHL20(2) >MYB52(1)<---------At4g35610 --------->YAB1xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------AHL20(2)   acaacaacactcagctatttacacatttacattgatcatggttaaaaaaaaaaaaaaaaaaaaatcaaattttggatattgatttttttttattttacta  2552200   --------->ANAC46                                                                         ---------   --------->ANAC58                                   --------->ANAC58            --------->YAB1  ---   --------->ANAC58                                   --------->ANAC58  <-----------HVH21 --------->ETT(1) --->HSFB2a(2)                                      <---------ANAC58 <---------ICU4       <---------ANAC46 ----HSFB2a(2)                            --------->YAB1             --------->YAB1    <-----------RAV1(1) ---GT1         ---------->DOF2 >>>>>>>ZML2         <---------ANAC58<---------ATHB12 <---------ICU4   gaaacacacaaaaaaaaaaaaagacaatttagttctagcctcgataaaaatcaggcatgcccaattgcccatcatgtcagaccaaaataatgtcggataa  2552300                                                                              <----------ID1                                                                      ------>MYB83                                                                      ------>MYB46(1)                                                                    --------->AtMYB61                                                                 <---------WRKY18(1)                                                            <---------ANAC58  ----------->GT1                  ----------->GT1                           <---------ANAC58---------->DOF2                  <---------ANAC46                ----------->GT1<-----------GT1         --------->HSFB2a(2)                     --------->DAG2 --------->WRKY38(1)             <----         ------>ZmHOX2a(1) <---------YAB1----------->GT1  <XXXXXXXXXXXXXXXXXXXXMIR3440B-3P      <---- -->GT1  <---------HSFB2a(2)  ---------->DOF2   ---------->DOF2 ----------->HVH21            -------- ------->DOF2    --------->MYB59     <-----------HVH21 <---------YAB1--------->WOX13(1)      --------   aaaagcccatcctagaaattgggtaaaatatgaaaagactgtcaagttaaaaaagttatttttcgtttgaccaatccaaaaagaaaaacttgagtctgac  2552400                               <---------ANAC55(2)                               --------->ANAC55(2)                            <---------MYB52(1) --------->ANAC58    <----------DOF2 --------->ANAC58  <---------At4g35610          <---------ZAT6    ----------->GT1 -----ETT(2)     <---------ZAT14            <--------P     --------->HSFC1(1) -----bZIP60(1)  --------->ZAT18         <---------TOE2(3) --------->HSFB2a(2)                      = --->TGA1        --------->ZAT14         <---------TOE1(3) <---------HSFC1(1)                       < --->HVH21       <---------ZAT18  --------->MYB52(1)       <---------HSFB2a(2)     *TSS             =   gacaagacagtagtagtagtgcgctgttctgttaagtaactgtaaggttagtgtttgacttcgagaaatagtaaatgtgtctgtaaaacctccaaatcgt  2552500                                    <------ZmHOX2a(2)                                   --------->ARR14(2)                                   --------->ARR11(3)                                   <---------AGP1                          --------->ZAT6                      <---------MYB59                    <---------ARR11(3)                    --------->ARR11(3)                    <---------ARR14(2)                    <-----------ARR10------>ZmHOX2a(2)                    --------->AGP1 <---------ARR11(3)               <-----------HVH21   <---------ARR14(2)          --------->GLK1(1)        --------->AGP1       --------->LBD16------>ZmHOX2a(2)   <---------ARR14(2)<------ZmHOX2a(2)       --------->YAB1          <---------ICU4  --------->GLK1(1) --------->ARR14(2)<---------YAB1                 --------->YAB1  <---------GLK1(1) <---------AGP1<---------CCA1(2)                 --------->ICU4 ============================HOX2a_HOX2a    <---------YAB1          <---------ATHB12 ------ZmHOX2a(1)  <---------CCA1(2)--------->CCA1(2)               <---------YAB1 ===========================HOX2a_HOX2a   --------->YAB1 <----------DOF2                         <---   gaggaaatccagagttccatcagatctaactctcttagatctgattatcatggattactctttccttctaatcattctcttactcacaatctctacttca  2552600           ------>ZmHOX2a(1)      <---------At4g35610                                ----------->RAV1(2)   <---------At4g35610                                  -------->P                            <------  <-----------RAV1(1)                           ----------->GT1                            --------->ZAT14 --------RAV1(1)    <---------ANAC46         --------->GLK1(2)                             <---------ZAT14   tgttgtgctgctccttcttcttatgtggaagaacaattgagagacagaatcagtaacttacctggacaacctagtaatgtcgattttagacagtactcag  2552700                                                                   ----------->HVH21                                                                  <-----------HVH21                                                            --------->WRKY12                                             --------->MYB55(2)   --------->LBD16                                             --------->MYB111(2) ===================bZIP_DOF                                             <---------AtMYB61   ===============================bZIP_DOF                                             <---------MYB46(3)  --------->TGA1a                               ============================================bZIP_DOF                               <----------DOF2<---------MYB46(3) <---------TGA1a                            <---------ARR11(3)<------MYB83 <---------MYB52(1)                      --------->ALFIN1       --------->MYB111(1) --------->ANAC55(2)                     <-------MYC2           <--------P    <-------GAMYB  ---------->DOF2                     ------->MYC2           ===============================MYC_MYB           <-------           <---------AtLEC2 --------->ARR11(3)<------MYB46(1)    <---------ANAC55(2)         <-------  <-----------HVH21  ------->MYC3         <---------MYB46(3)--------->WRKY38(1)      <----------DOF2 -----RAV1(2)        <-------MYC3         --------->ATHB12=================MYC_MYB<---------ARR11(3)   gctatgtcactgtgcatgaagaacgtggaagagctttgttctactggttggtcgagtctccgttggcccgtgacccaaagtctagacctttggttctgtg  2552800                                                                   <------MYB46(1)                                                                   <---------MYB46(3)                                        <---------At4g35610        <------MYB83                                 <-----------RAV1(1)              <---------AtMYB61                             <---------ANAC58                  <-----------RAV1(1)                             <---------ANAC58                <---------ANAC46                             <---------ANAC46                <---------ANAC58                          <---------MYB52(1)             <----------DOF2        <------NtERF2   <-----------RAV1(1)    --------->ARR11(3)<--------P     --------->ANAC58 --ANAC46       <---------MYB46(3)   <---------At4g35610<---------DAG2  <---------YAB1            <-- ----RAV1(1)   <--------P<-------GAMYB  --------->At4g35610  <---------ANAC58   --------->ANAC58  <--   gctcaatggtggccctggttgttcttctgttgcttatggtgctgctgaagaaattggaccttttcgtgttggttctgatggcaagactcttcattccaaa  2552900                                                                <---------REM1(2)                                                   <---------ANAC58                                                   <---------ANAC58                                                 --------->ARR14(2)                                                 <---------ARR11(3)    <---------ANAC58                             --------->ARR11(3)                              <---    <---------ANAC58                             <-----------ARR10               <---------GLK1(2)    <---------AtLEC2        <----------DOF2      <---------ARR11(1)              <---------ARR14(2)  <---------YAB1            --------->TOE2(3)    <---------ARR14(2)              --------->ARR14(2) < --------DOF2        <-----------GT1            <---------ARR14(1)       <---------YAB1      -------- -------DAG2   ----------->GT1                  <---------CCA1(2)     --------->GLK1(2)  <----------DOF2   ctttatgcttggaataaatgtaatatccatctttaactaaatctctcaccatatcttgctcttctcttcacgattccgattcagatttgttctttgtctc  2553000  Previous    Next  AGI:  At3g07990.1    Description:  SCPL27 (serine carboxypeptidase-like 27); serine carboxypeptidase. Identical to Serine carboxypeptidase-like 27 precursor (SCPL27) [Arabidopsis Thaliana] (GB:Q9SFB5); similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68975.1); similar to hypothetical protein OsI_004235 [Oryza sativa (indica cultivar-group)] (GB:EAY76388.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74854.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) Range:  from: 2552483    to: 2554927    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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