Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <---------YAB1                                                                                   <---------AHL20(2)                                                                                   <-----------GT1                                                                               <---------ICU4                                                                               --------->ATHB51                    <---------MYB52(1)                                         <--------HAHB4                   <-------GAMYB                                               -------->ATHB1       --------->AHL20(1)                                                      -------->HAHB4       <---------AHL20(1)     ------>ZmHOX2a(2)                                <---------AHL20(2)       <---------AHL20(2)   --------->ARR11(3)       --------->AHL20(1)        --------->YAB1       --------->AHL20(2)   <---------ARR11(3)   --------->YAB1               <---------YAB1 --------->YAB1   ----------->GT1                ---------->DOF2              --------->ICU4 -------->ZAT6    ------>ZmHOX2a(2)             <---------ATHB12         --------->TOE2(3)          < ---->AHL20(2)   <------ZmHOX2a(2)     <----------DOF2      --------->AtLEC2  <---------ATHB51      < -ANAC58        <---------ARR11(3)  --------->GLK1(2)--------->ARR11(3) <---------At4g35610         < -ANAC58        --------->ARR11(3) <---------GLK1(2) <---------ARR11(3) --------->At4g35610 <--------   taatactaatattttagagatcgttattttgatcttagattcttttgtcaataaagatattgatgcaaaaatttagcttaattattaacttattatacaa  2540600                                           <---------AHL20(2)                                          --------->AHL20(1)                                          <---------AHL20(1)                --------->AHL20(2)                                         <---------AHL20(2)                 <---------ARR11(3)                                      ------->TEIL                          --------->ARR11(3)                                   <---------ANAC58           <---------YAB1<---------AHL20(2)           ------>ZmHOX2a(2)       <---------ANAC58        --------->AHL20(2)               ---------  <---------ANAC46                 <---------ANAC55(2)     <---------AHL20(2)              ---------- ---------ANAC46                   --------->ANAC55(2)     <---------AHL20(1)<---------AHL20(2)    <- ------MYB83                       <---------ANAC55(1) <---------AHL20(2)   <---------AHL20(1)    <-- ------MYB46(1)    ---------->DOF2 <---------ANAC46   <---------YAB1        --------->AHL20(1)    <-- ---GT1  --------->ARR11(3)   <---------ICU4         <---------AHL20(2)    --------->AHL20(2)     <--   tttggtgtattgatctagtacaaaagaacccttcattacgtatatatatttgtatttttattttatttttggacaaaatatatttgtatttgttaaagtg  2540700           <-------TEIL           ------------>CBF   --------------->AtSPL8   <---------TOE2(3)                                 <---------HSFB2a(2)   <---------------AtSPL8                            --------->HSFB2a(2)                     ------->TEIL   <---------------AtSPL3                           <---------LBD16                        ------->GAMYB >DAG2 ------->TEIL                            <------------CBF                           <---------MYB52(2) >DOF2 <-------TEIL                        --------->YAB1                            --------->YAB1 ---------DOF2                             --------->TOE2(3)                         <---------ICU4 -------ANAC46                            <---------YAB1                            --------->ICU4 -------ANAC58            --------->AHL20(2) <---------YAB1                      <------ZmHOX2a(1) -------ANAC58       ------>ZmHOX2a(2)   <---------TOE2(3)              --------->YAB1  --------->MYB52(1)   gctttaatgtacgttcaatttgatcgacttaaataaacttatttatgttaattgtctggaaacgatttgagtaatgaaaatgaggaataataacgaacat  2540800                              <---------ARR11(3)                              --------->ARR11(3)                          ----------->GT1                          <---------ANAC55(2)                --------->ANAC58                                                                 <---                --------->ANAC46                                                            ---------                --------->ANAC58                                                            ---------            --------->HSFB2a(2)                                                             ---------            <---------HSFB2a(2)                                                     --------->AHL20(2)  ------>ZmHOX2a(1) --------->AHL20(2)                                              ----------->TBP  <---------At4g35610     --------->ANAC55(2)        --------->AHL20(2)       <---------CCA1(2)------   tttcctctgattttctacaagaaaaaataggtgatattcaactaaatctcttaaatcaaatacttctctgtctctctctcatctctataaatacacgaac  2540900                                                                  --------->TOE2(3)                                                                  --------->TOE1(3)                                                                -------->P                                                                ------>MYB83                                                                ------>MYB46(1)                                                               ------>MYB83                                                      <-----------HVH21                                          <---------ICU4       ------>MYB46(1) -------DOF2                             <---------YAB1     --------->ANAC58                     ---- >ANAC58                                 <---------ATHB12   --------->ANAC58                 -------- >ANAC46        --------->bZIP60(2)   ------>ZmHOX2a(1)     --------->ANAC46                 -------- >ANAC58   ----------->HVH21     <----------DOF2      --------->TOE2(3)                    <---------ALFIN1 ->TEIL  <---------ICU4      <---------CCA1(2)       --------->ANAC46        <----------DOF2 --------   ttttgcattcttcatgacacatcattcactcatctctttcctcatcattctttctacgtcaaacccaaccttaatctaactttgagagaagtcccactcc  2541000                                                                                     <---------YAB1                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                                 --------->AHL20(2)                                 --------->ZAT6                            -------->P<---------ATHB12                            --------->TOE2(3)                            <---------MYB111(1)                      --------->YAB1                                     <---------MYB52(2)     --------->AHL20(2)   <---------ARR11(3)                            --------->ZAT2--------->YAB1 ------->RAV1(1)     <------ZmHOX2a(2)                                  --------->At4g35610        <- ->ANAC58           <---------ARR11(3)                                  <---------At4g35610       --- ->ANAC46           --------->ARR11(3)                               <---------At4g35610        ----- ->ANAC58       ---------->DOF2 <---------YAB1<-----------GT1        --------->At4g35610        <----   aacaaaaaaaaatgtatgaaaagatcataatcttatcagtatttctcttaacatttcttccttcttgtttcagcagctacccatttaatcatagagatga  2541100                                                                        <---------ANAC55(2)                                                                    <-----------HVH21                                                                   ------->GAMYB                                                                  --------->MYB46(3)                                                                --------->MYB52(1)                                 <---------ATHB12               ----------->RAV1(1)   <---------AtLEC2     <---------YAB1                       --------->ANAC58                      <- ---------DOF2        --------->YAB1     --------->TOE2(3)   --------->ANAC55(1)                   == --->ZmHOX2a(2)      <---------YAB1   ----------->RAV1(1)    --------->ANAC46                      -- ---->ARR11(3) --------->ICU4   ------>MYB46(1)              --------->ANAC55(2)                   -- -----ARR11(3)<---------TOE2(3) ------>MYB83                 --------->ANAC58          --------->ICU4   tcttttcatgtcttctaatgtttattatgaaaccaatcgacaacatcaacatggtcacaatacacgcaacagtcacttgaaaaatcgccatggttatgct  2541200              <---------ARR11(3)              --------->ARR11(3)           ------>ZmHOX2a(1)           --------->HSFB2a(2)    ------>ZmHOX2a(2)    ==============HOX2a_HOX2a   ===============HOX2a_HOX2a   <------ZmHOX2a(2)  <-----------ARR10  --------->AGP1  <---------AGP1 <----------DOF2  --------->ARR14(3)  <---------ARR14(3)  <---------ARR14(2)            <----------DOF2  --------->ARR14(2)         <---------ALFIN1                                                      <-  <---------ARR11(3)    <-----------TGA1                                                          <--  --------->ARR11(3)    --------->TOE1(3)              --------->SPL7                     <---------YAB1 <---------CCA1(2)      --------->TOE2(3)          ------->GAMYB                         --------->AHL20(2) --------HSFB2a(2)    <---------TOE2(3)         --------->MYB52(1) <---------TOE1(3)    --------->YAB1 ======================HOX2a_HOX2a          --------->ANAC58       <---------TOE1(2)   <---------YAB1 ---->ZmHOX2a(1)------>ZmHOX2a(2)           --------->ANAC58       <---------TOE2(3)  --------->TOE2(3) ------->HSFB2a(2)   <-----------GT1      ---------->DOF2     --------->GLK1(2)      --------->YAB1--   cctagatcttctcctcgatcttttaacgtcaacactttcggtgctaaagccaacgggaacgacgattctaaggtttttatttctctaacattataatcca  2541300                <---------AHL20(2)             --------->YAB1            <---------YAB1            --------->ICU4           <---------AHL20(2)           --------->AHL20(2)           <---------AHL20(1)                       ---------->DOF2          --------->YAB1                          <---------YAB1                <---------LBD16         <---------YAB1                  --------->SPL7                        -------->P        --------->TOE2(3)               --------->ATERF1(1)        --------->ZAT2 --------->LBD16       --------->YAB1                  <---------SPL7   <---------ANAC58     <---------WRKY12 --------ARR11(3)            <---------YAB1   <---------RAP2.6(3)  <---------ZAT2------->GAMYB -------CCA1(2) --------->AHL20(2)    <---------ANAC46  <---------ANAC58   <-----------HVH21 ------->ARR11(3)<---------AHL20(2)  --------------->AtSPL3     <---------At4g35610             <----   atatctctaacattataattaaatgaaatctatgtttgagccgtaggccttcatgaaagcttgggaagcagcttgttcgtcaaccggaatagtttacatt  2541400                                     <---------ANAC58                                     <---------ANAC58                                     --------->ANAC55(2)                                    <--------                                     <---------ANAC55(2)                                  <---------AHL20(2)                                  <---------ARR14(2)                  <---------YAB1      --------->AHL20(2)                                  <---------MYB52(1)          --------->TOE2(3)       <---------AHL20(2)                                  --------->ARR14(2)        <---------YAB1        ----------->GT1                                <---------MYB46(3)        --------->YAB1    <---------TOE2(3)  ------                             ------------>MYB.PH3(1)     <---------ATHB12   <---------TOE1(3) -------     ---------->DOF2        --------->DAG2           <XXXXXXXXXXXXXXXXXXXXMIR169H-N   --------->AHL20(2) -------RAV1(1)            ---------->DOF2         --------->AtLEC2<---------YAB1<---------AtMYB61   gtggctccaaagaatagagattacatgcttaaagcggttacgttctctggtccatgtaaatcatccttgattatttttaaggtatggtttaattaaacca  2541500  Previous    Next  AGI:  At3g07970.1    Description:  polygalacturonase, putative / pectinase, putative. similar to PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA), polygalacturonase [Arabidopsis thaliana] (TAIR:AT2G41850.1); similar to polygalacturonase precursor [Cucumis melo] (GB:AAC26512.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 2541012    to: 2543438    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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