Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------MYB55(2)                             --------------->AtSPL3                             <---------------AtSPL8                             <---------------AtSPL3                             --------------->AtSPL8    --------->WOX13(1)            --------->CCA1(2) ----------->GT1        ---------->DOF2           --------->MYB46(3)                <---------ARR14(2) <---------ANAC46 <---------ZAT2                --------->ANAC58                    --------->ARR14(2) -------TEIL      --------->ZAT2                --------->ANAC58                   <------ZmHOX2a(1) ----->ZAT2  ----------->HVH21          <---------ANAC58               <---------ANAC46 ------At4g35610  <---------At4g35610   --------------------->WRI1     <---------ANAC58       ------- ----->At4g35610  --------->At4g35610   <---------ANAC46               <---------ANAC58  ---------->DOF2 ->GLK1(2) <----------DOF2--------->DAG2<---------ANAC58  --------->YAB1          ----------->GT1   gcttcgtaaattcctttgacagctcagaaaggtagtacatttccttggacaaaccaccaattagaaacaattttcttggacgagaggatataaaagtagt  2534500                                                                --------->ANAC46                                                           --------->ZAT6                      >>>>>>                                                        --------->ZAT14                    --------->YAB1               ---------->ID1           --------->YAB1  <---------ZAT18              <---------WOX13(1) ---->GT1<-----------GT1   <---------YAB1      --------->ANAC55(1)              --------->TOE2(3)   <   tatacatgttttcacttgtctctaaacttgttattgaaacagtcgtaactcgtaatggttcactctaagacacaaaaatgtttcttaattgaatgaaaac  2534600                                                                <---------At4g35610                                                              <-----------RAV1(2)                                                            <-----------HVH21                                                           <------MYB46(1)                                                           <------MYB83                                                       --------->ATHB12                --------->GLK1(1)                                 --------->AHL20(2) --------->At4g35610       ---------->DOF2 >>>MYB2--------->YAB1        --------->YAB1        <---------At4g35610  <---------------AGL15 ---------ATHB12   ---------->DOF2   --------->CCA1(2)<---------YAB1     --------------->AGL15-------   caatgaacaaaaatgatataaaaaagaagtcttcataatatacaagagagagggagatgataggtcagaagatggcccataaaagaagggattccattga  2534700                                                                                           --------->TGA2(2)                                                                                          <<<<<<<<<<<AtbZIP1                                                                                          <----------                                                                                         <---------O2                                                                                         --------->O2                                                                                         <---------ANAC55(2)                                                                                         --------->TGA1a                                                                                         <---------TGA1a                                                                                         <---------bZIP60(1)                                                                                         <---------TGA2(1)                                                                                         --------->TGA2(1)                                                                                         --------->bZIP60(1)                                                                                        <-----------STF1                                                                                       <---------TGA2(2)                                                                              =======================                                                                              =======================                                                                         ==========================bZIP_DOF                                                                         ---------->DOF2----------->STF1                                                                         ==========================bZIP_DOF                                                                    ----------->GT1   ----------->TGA1          <-----------GT1                                         ------------------------>ANAC81 ---     ------->TEIL                       <---------TOE2(3)     =====================================bZIP_DOF -->WRKY38(1)                      <---------ZAT6             ---------->DOF2 ---------->DOF2   <----   ctagatgtattttgactatatgtttttttttttttttgtgttaagaatactgtatatgaaaatagaaagagagagaaaagaaaaggaaatgacgtcagca  2534800                                                                                      ------------>CBF                                                                                     --------->YAB1                                                                                    <---------ATHB12                                                                             <---------GLK1(1)                                                 <------MYB83                <---------At4g35610            --------->O2 <---------ANAC58        <------MYB46(1)             --------->At4g35610            <---------TGA1a                     <---------AtMYB61            --------->ZAT2            <---------O2 <---------ANAC58       <---------MYB46(3)           --------->GLK1(1)            --------->ANAC46                    --------->MYB59              <---------ZAT2            --------->bZIP60(2)                 --------->MYB46(2)          --------->ARR14(2)          <---------ALFIN1                      --------->MYB111(2)         <---------ARR14(2) -TGA1   --------->MYB46(3)                     --------->MYB111(1)        <------NtERF2 =====================bZIP_DOF       <---------At4g35610                  --------->LBD16 =====================bZIP_DOF     --------->HSFB2a(2)         <------ZmHOX2a(1)------------>CBF -------->HVH21 ------------>CBF   <-----------RAV1(2)    <----------DOF2--------->ANAC46           < --------CBF--------->TGA1a        <---------HSFB2a(2)    <---------DAG2<---------LBD16      *TSS   <   ttgacaaggtaaccacgtcgcaatgtagcgagtccctccagatgtctggtttggtagtcgctttaggaatcaaacgcggagctccaataacaatggccat  2534900                                                           <---------DAG2                  <---------CCA1(2)  ------>MYB83                 --------->ANAC46            <----------DOF2               --------->O2  ------>MYB46(1)              --------->ANAC58           <---------DAG2      <---------GLK1(1)   <-- ---------MYB59                --------->ANAC58<----------DOF2      ------>ZmHOX2a(1)    <---------O2 ---------MYB46(2)     <---------GLK1(2)     ------>ZmHOX2a(1)  <-----------GT1    ------>ZmHOX2a(1)   taccaaactcttcaatttctctatcgattcttcacacaacaacattcctctttcttcccccctttttttcctcgttttcgatttcctcgtctcgtctctt  2535000                                       --------------->AGL15                                       <---------------AGL15                                      --------->LBD16                                      ----------------->AGL2                                      ----------------->AGL3                                     --------->ANAC46        <-----------GT1    <---------MYB52(1)     --------->ANAC46              <----------DOF2   <-------GAMYB---------->ID1      --------->ANAC46--------->ARR11(3)                        <------  <-----------RAV1(1)      --------->ANAC58         <---------ARR11(3)                    ------>ZmHOX2a(1) --------DOF2<<<<<<<<<TBF1 --------->ANAC58 ---------->DOF2 <---------CCA1(2)       ---------->ID1   ctttctgttgtcttcttcttcgttttctcacgccattccccccaaaaaaagaaacatctcttttatctctctctctctctctcttcgtcgtccttggcct  2535100                                   ----------->RAV1(1)                                   ------>MYB83            =====================HOX2a_HOX2a                                   ------>MYB46(1)     <---------HSFB2a(2)                         ---------->DOF2 --------->At5g28300                       <---------YAB1<---------ALFIN1  --------->HSFB2a(2)                       --------->HSFB2a(2)     <---------LBD16                       <---------HSFB2a(2)  ---------->DOF2<------ZmHOX2a(2)         <---------GLK1(1)      --------->ANAC58   <---------ARR14(2)         --------->GLK1(1)      --------->ANAC58<---------RAP2.6(2)               ----------->GT1   - ---ANAC46     <---------MYB52(1) --------->ANAC46 --------->ARR14(2)    <------ZmHOX2a(1)      -----   atactacattgaaatccgataagttctgaaagaaacccaacacagtaaatgcggcttcgcgatctaagctatggaggaacgaatgagaaaaaacatagaa  2535200                                                                                              <------                                                                                          --------->ANAC58                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                                                       <---------ZAT18                                                                                     <---------At4g35610                                                                                  <-------GAMYB                                                                                 <---------DEAR3(2)                                                                                <<<<<<<<<<DREB2A                                                                                <<<<<<<<<<AtTINY2   <      --------->AHL20(2)                     ----------->GT1                    <<<<<<<<<<DREB1A <---      <---------AHL20(2)                   ---------->DOF2                      <<<<<<<<<<DREB1C-----      <---------AHL20(1)            ----------->GT1                             <<<<<<<<<<DREB1B-----      --------->AHL20(1)            <----------ID1                              <---------At1g77200 -   --------->YAB1                  ----------->GT1  >>>>>>>>>CBP60g             <---------DREB2C(2) < ---------->RAV1(1)          ---------->DOF2--------->DAG2  ---------->DOF2    --------->DDF1 ------- ---->GLK1(2)    ---------->DOF2 ---------->DOF2    >>>>>>>>>SARD1    ----------->GT1--------->At4g35610   tccaacaataaaatgtgagaaaagagacagagaaagaaaggaaaaaaaagtgaaatttggaagaaagaagaagagagaaatgtcggtagcacacgcagat  2535300    <------NtERF2   ------>NtERF2  --------->DEAR3(1) --------->RAP2.3(1) <------NtERF2 --------->ATERF1(1)                         ---------->DOF2 --------->DEAR3(2)                       --------->LBD16 --------->ORA47(2)                       ------>NtERF2 ---At4g35610                            --------->DEAR3(1)           <---------ZAT14 ---------RAP2.3(1)    ------->GAMYB   ------>NtERF2                  --------->ZAT14 ------TGA2(2)       ------>MYB83     --------->ANAC58       --------->At5g28300    <---------ANAC58 ------>TGA1         ------>MYB46(1)  --------->ANAC58      ----------->GT1 <<<<<<<<<<<<<<<<<LFY ------>HVH21       --------->MYB52(1)--------->ANAC46   ------>MYB83 <---------REM1(2)            <- ----->NtERF2--------->At4g35610  <---------At5g28300    --------->MYB52(1) <------ZmHOX2a(1)      -- ---------ATERF1(1)--------->AtMYB61<---------ALFIN1     ------>MYB46(1) --------->ANAC46         --- -->At4g35610<---------At4g35610 <-----------GT1 <---------ICU4  --------->GLK1(1)  <---------ANAC58   gacgccgacgattacagcagaccaacgggagagagttaccacgccgagaaagcattaccaagcggtgatttctacacaggacaatggcgagacaatctcc  2535400  Previous    Next  AGI:  At3g07950.1    Description:  rhomboid protein-related. similar to unknown [Populus trichocarpa] (GB:ABK94692.1); contains InterPro domain Protein of unknown function DUF1751, integral membrane, eukaryotic (InterPro:IPR013861) Range:  from: 2531858    to: 2534510    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g07960.1    Description:  phosphatidylinositol-4-phosphate 5-kinase family protein. Identical to Phosphatidylinositol-4-phosphate 5-kinase 6 (PIP5K6) [Arabidopsis Thaliana] (GB:Q9SFB8); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT2G41210.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative [Arabidopsis thaliana] (TAIR:AT1G77740.1); similar to PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT3G56960.1); similar to unnamed pro Range:  from: 2534893    to: 2538378    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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