Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <----------DOF2                                                                            --------->At4g35610                                                                            <---------At4g35610                                                                            --------->ZAT2                                                                            <---------ZAT2   ------>ZmHOX2a(1)                                                     <---------MYB52(1) ----->ZmHOX2a(1)                                                       <-----------TGA1 --------ALFIN1                                                         <-----------HVH21 ------ATERF1(1)                                                     <---------DOF5.7(2) -->HSFC1(2)                                                         <---------At5g28300 ---HSFB2a(1)                                                      --------->DOF5.7(2)   --------->TOE2(3) ---ATERF1(1)                                    <-----------GT1 <---------ZAT6 ----------->HVH21 --- -->HSFB2a(1)             <-----------RAV1(1)   <-----------GT1  <---------ANAC58       ------------- ---HSFC1(2)   ---------->DOF2 <---------HSFB2a(2)               <---------ANAC58  --------->ZAT6<---   tcctcctccgttcaacttaaagccatcaatgttgccgaagacgacccatttttccttcccttggatagcgttaccgtcagctttgacagtaccttgaagg  2497700                                                                                            <--------                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                   ----------->TGA1                                                                                   ----------->HVH21                                                                                 <------MYB46(1)                  <---------ANAC58                                               <------MYB83                  <---------AtLEC2                                            <---------ANAC58  --------->TOE2(3)                                                           <---------ANAC46 <---------bZIP60(1)                          --------->ZAT2                  <---------ANAC58  <---- ----------------->AGL1------->TEIL           <---------ZAT2                  <---------AtLEC2  <---- -------->HVH21   <---------ANAC46           ------>MYB46(1)           <---------ALFIN1   --------->ATHB12 ---->AGL1        <---------ANAC58           ------>MYB83          <------ZmHOX2a(2)  <---------ANAC46 --------HVH21<----------DOF2         ------>ZmHOX2a(2)    <----------DOF2<----------DOF2----------->ARR10   gtgacctcaatgggagctttgcatggacccctcatctcgatctcaccaagcttgaactctccttttgggatcaccactttgcttggtgacgaagattggc  2497800                                            <---------ZAT6                                            ----------->GT1                                          <---------ANAC46                                        --------->ZAT18                                        --------->ZAT14                                 --------->YAB1                                                    --                        <---------ANAC58<---------ZAT18                                       <------                        <---------ANAC58<---------ZAT14    --------->MYB52(1)                 <------ -WOX13(1)      --------->HSFB2a(2) <---------ICU4         <-----------GT1                    <------ -----ANAC58    <---------HSFB2a(2)<---------YAB1   --------->TOE1(3)                      <---------GLK1(1) -----ANAC58 <----------DOF2  <---------CCA1(2)     --------->TOE2(3)<----------ID1  <---------ANAC46   atgccgatgtgaatgctttcagaagtgcctgcatatcatcagtgcagtgtgaaaccctaattaacgagttaaggccaaaaaatggttttgtagatttctt  2497900                                                                                                  ---       ---------->DOF2              ----------->RAV1(2)                                           ---     --------->ANAC58              --------->GLK1(2)          --------->TOE2(3)         --------->MYB52(1)     --------->ANAC58             <---------ARR14(2) ----------->GT1                   ------->GAMYB --------->ANAC58                 --------->ARR14(2) --------->YAB1                   <---------MYB52(2) --------->ANAC58   --------->TOE2(2)             --------->MYB52(1)                  <---------MYB111(2) -------->DOF2      --------->TOE2(3)           --------->MYB46(3)                    --------->MYB46(3) ---ANAC58         ----------->RAV1(2)         <<<<<<<<<<<<<<<<<LFY                   <---------MYB55(2) ---ANAC58        -------->P   --------->YAB1  >>>>>>>>>>>>>>>>>LFY                 ----------->RAV1(1) ---ANAC46     <---------MYB52(2) <---------GLK1(2) <---------ATHB12    --------->At4g35610----------   ggaaagcaagaaagagaactaacctgagtaatatcagaacctgatgaagaaccaatggtgaatacctcagcattggctgaaattcccaacaaacagataa  2498000                                                           ==========================================                                                           --------------->AGL15                                                        <-----------GT1                                  <-----------GT1   --------->AHL20(2)                          --------->ANAC46          --------->AHL20(1)                       --------->MYB46(3)           <---------AHL20(2)                     --------->ARR14(2)            <---------AHL20(2)                     --------->ARR11(3)            --------->AHL20(2)    ----------->GT1  <---------ARR14(2)         --------->AHL20(2)                               <--- ------>AHL20(2)     <-----------GT1           --------->AHL20(2)                                ---- ------>YAB1        --------->RVE1(1)      --------->AHL20(2)         <---------YAB1             ---- ->GT1              --------->CCA1(1) --------->LBD16<---------ICU4 <-----------GT1             <----   taaaaattgtagaaactccaaaatatccacccattttttccccaaaaaaataaaaaaattactactaatattactatttgttattctattttttgttttc  2498100                                       --------->MYB55(2)                          --------->AHL20(2)                          <-----------TBP                        <----------DOF2<---------MYB46(3)              <-----------RAV1(2)   <-------GAMYB    <---------YAB1      <---------------AGL15 *TSS      <---------At4g35610     <---------ANAC58                                 <---------ALFIN1 ========================================MADS_MADS                                  --------->DEAR3(1) ------HSFB2a(2)       --------->TOE2(3)<---------AtLEC2                            --------->AtMYB61 ----->HSFC1(1)<---------TOE1(3)   <---------ANAC58                                --------->MYB46(3) ----->HSFB2a(2)       <-----------------AGL3  <------ZmHOX2a(1)   <---------AHL20(2) -----LBD16--------->At4g35610    --------->ZAT18   --------->ARR11(3)           <-----------GT1   --   tggaatttgattaagctcaggtttacctttatatagtgcgttggatggaggagagatgttgaagtctattttttgaaaatttctcaccacctctcatttt  2498200             <-----------HVH21           --------->MYB46(3)         <-----------------AGL1                    <---------TOE2(3)        <---------WRKY18(1)             ------->TEIL <------ZmHOX2a(1)        <-----------GT1                 --------->ARR11(3)        --------->DAG2                   <-       --------->WRKY12  --------->At4g35610       <---------TOE1(3)       ---------->DOF2   --------       ----------->HVH21 <---------At4g35610      --------->MYB52(1)  --------->GLK1(2)   --------->AtLEC2 ------->MYB59    <------ZmHOX2a(1)    <---------CCA1(2)         ---------->DOF2       <---------YAB1   ttaggtcgtttgacccatcaggaagtctgatgtctaattttgtatcttgaactaaggatgaaaactaaaaagtatctaaaagggacattttcattcaaag  2498300                                                                --------->ANAC46                                                              --------->ANAC58                                                              --------->ANAC58                                                             <---------ZAT14                                                             --------->ZAT14                                                             <-------TEIL                                                          <------MYB46(1)                                                          <------MYB83                                                          <---------DEAR3(2)                                                         <---------MYB46(3)                                                         --------------->AtSPL8              ---------->DOF2                            --------->MYB46(2)             <---------AHL20(2)           ----------->GT1--------->MYB59         <---------AHL20(2)      >>>>>>>>>>AGL20         --------->MYB111(1)     --------------->AGL15       >>>>>>>>>>AGL24         <---------DEAR3(1)     <---------------AGL15       >>>>>>>>>>AGL22      <------MYB83                <---------AHL20(2)    ==========================================MADS_MADS <---------ORA47(1)       --------->AHL20(2)    ----------------->AGL3    <---------------AGL15   <------MYB46(1)       ----------->GT1      <--- --------GLK1(2)              --------------->AGL15  --------->MYB59     --------->YAB1          <--- -->DOF2 --------->AHL20(2)  <-----------------AGL3  <---------AtMYB61--------->MYB52(1)         <---   agaatttctatatatataaagtctaattttgcctaaatatggtcatgttaatagtttggtcggtacacaaaacaacgatagtataaaattcgactattgg  2498400                                                                                   <---------TOE2(3)                           ------>MYB46(1)                                   <---------AHL20(2)                           -------->P                                        <---------AHL20(1)                           ------>MYB83               <---------ICU4 <---------AHL20(2)                         --------->AtMYB61           --------->ICU4<---------AHL20(2)         -------   <---------GLK1(1)     <---------ALFIN1           <---------AHL20(2)       --------->AHL20(2) ------ANAC58         <-----------GT1         <----------DOF2     <---------ARR11(3)         <------- ------ANAC46       <-----------GT1        <-----------GT1        --------->ARR11(3)         -------- ------ANAC58<---------AHL20(2)   <----------DOF2  --------->YAB1 <---------AHL20(1)  --------->ALFIN1   cctggaatcccttgttaaattttttcaccatcccgtctttatatttatctttataaaaattagaagtatatatttttaaaaaatttaggtgttgaatatt  2498500                                            <-----------GT1                                          --------->YAB1                                          <---------ICU4                                     <---------MYB52(1)         --------->YAB1             --------->TOE2(3) ----------->GT1                    <-------GAMYB -->KAN4(2)    --------->TOE2(3)   --------->MYB52(2)                  <---------AHL20(2) --KAN4(1)    ----------->GT1  <---------MYB46(3) <---------ATHB12   <---------AHL20(2)             < ->KAN4(1)    <---------ANAC55(2)  <---------MYB46(3)     <---------YAB1         <---------AtLEC2   <   ctttggtaaaatcaaaacgtaaaactcttaagtttgttcgttaattataccattcatttcattatacacatatatttttgtttacatgaaaatggaagtc  2498600  Previous    Next  AGI:  At3g07820.1    Description:  polygalacturonase 3 (PGA3) / pectinase. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G07840.1); similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G07830.1); similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT5G48140.1); similar to pollen-specific protein MF9l [Brassica oleracea var. alboglabra] (GB:ABL63521.1); similar to pollen-expressed protein MF9c [Brassica oleracea] (GB:ABG38468.1); similar to putative pollen polygalacturonase [Brassica oleracea] (GB:AAM74219.1); contains InterPro domain Pectin lyase fold (I Range:  from: 2496446    to: 2498101    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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